Clone Sequence Records
BS08033.3prime Sequence
837 bp (836 high quality bases) assembled on 2006-01-06
> BS08033.3prime
ATGGTCTAGAAAGCTTTCAGTAGGAAAGTGCCGAGGGCGAACGCGAGCCA
ACTGTGAAATCTTTGTACACCGAAAACACAGATATCTTGTCTTTTAATTG
CTGGCACAGTTTCTGGCCATTCATCAGCAGCAGTAGCACGTCGTTAAGCC
ACTGGACAGAGGCCTCCGCTTGGCGGGAATCGAAGCGCATTGTGCCCTGG
TTGTTCAGCAGCTGGTAGACGGCAATGATCAGCTTGTGGCTCTGCAGGTA
GAAGCTAACGGCCAAATCCTCGGGCAGATTGGGCACCAGCGACTTCATAT
TGCGCCCTTTGATCAGCTCATCGATGGGCTTCTTTTTGGGCACCAGCAAA
CTGTTTCTGCCCCGCTGCAGGGCATCCAGAATGTTGCCTATCACATGCAG
CACTTCGTCGGAGGTTTTGAAGTGATAAGAGTCGTCGACATCGTCTATGT
GGTTGATGGCGGTCTGCAGATGATTGGCCGCATCCTGGACCTGCTGCAAC
TTCCAGGGAGAGTCATGTGTAATGGAGGTACGTTGCGTTTGGCTCGGTGC
CTTGCACAGCTTAAAGCTAATGTCAGCCTGGGTGATGGCATCGCCCGTTA
GGGTCAGCACGGCCTTCAGCTGATCGGGCGACACGGTGAGTATGAACTTC
TCAGTCTTCTTTCCCTCGTTCTCGTAAAGGGGCACCGGAAATCGATGAGC
GCACTCCACCAGAATGCTCCTTAATTGCTTCAGTATCGCGTGTACTTCTT
GGCGCAGCACCCACTCGAACTCGATTTGCAGGTTGAGGGCTTCCTCACGC
TCCGTGTCCGCGAGCATTTTCATGTCGACTGATAACT
BS08033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7725-PB | 1032 | rogdi-RB | 226..1032 | 823..17 | 4035 | 100 | Minus |
CG7725-PA | 807 | rogdi-RA | 1..807 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 2028 | CG7725-RA | 134..940 | 823..17 | 4035 | 100 | Minus |
rogdi-RB | 2335 | CG7725-RB | 441..1247 | 823..17 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17052955..17053285 | 416..86 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 17052721..17052878 | 574..417 | 790 | 100 | Minus |
3L | 28110227 | 3L | 17052002..17052135 | 707..574 | 670 | 100 | Minus |
3L | 28110227 | 3L | 17051860..17051933 | 779..706 | 370 | 100 | Minus |
3L | 28110227 | 3L | 17054296..17054366 | 87..17 | 355 | 100 | Minus |
3L | 28110227 | 3L | 17051410..17051454 | 823..779 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:09:20 has no hits.
BS08033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:27 Download gff for
BS08033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:53 Download gff for
BS08033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7725-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:41:06 Download gff for
BS08033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1247 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:21 Download gff for
BS08033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1247 | 17..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:21 Download gff for
BS08033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17052003..17052134 | 575..706 | 100 | -> | Minus |
3L | 17052721..17052878 | 417..574 | 100 | -> | Minus |
3L | 17052955..17053285 | 86..416 | 100 | -> | Minus |
3L | 17054298..17054366 | 17..85 | 100 | | Minus |
3L | 17051404..17051454 | 779..830 | 94 | -> | Minus |
3L | 17051861..17051932 | 707..778 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:41:06 Download gff for
BS08033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17044504..17044554 | 779..830 | 94 | -> | Minus |
arm_3L | 17044961..17045032 | 707..778 | 100 | -> | Minus |
arm_3L | 17045103..17045234 | 575..706 | 100 | -> | Minus |
arm_3L | 17045821..17045978 | 417..574 | 100 | -> | Minus |
arm_3L | 17046055..17046385 | 86..416 | 100 | -> | Minus |
arm_3L | 17047398..17047466 | 17..85 | 100 | | Minus |
BS08033.5prime Sequence
837 bp (836 high quality bases) assembled on 2006-01-06
> BS08033.5prime
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACTGAAAGCTTTCTAGACC
BS08033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7725-PB | 1032 | rogdi-RB | 226..1032 | 17..823 | 4035 | 100 | Plus |
CG7725-PA | 807 | rogdi-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 2028 | CG7725-RA | 134..940 | 17..823 | 4035 | 100 | Plus |
rogdi-RB | 2335 | CG7725-RB | 441..1247 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17052955..17053285 | 424..754 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 17052721..17052878 | 266..423 | 790 | 100 | Plus |
3L | 28110227 | 3L | 17052002..17052135 | 133..266 | 670 | 100 | Plus |
3L | 28110227 | 3L | 17051860..17051933 | 61..134 | 370 | 100 | Plus |
3L | 28110227 | 3L | 17054296..17054366 | 753..823 | 355 | 100 | Plus |
3L | 28110227 | 3L | 17051410..17051454 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:29:20 has no hits.
BS08033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:28 Download gff for
BS08033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:54 Download gff for
BS08033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7725-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:17 Download gff for
BS08033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1247 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:40 Download gff for
BS08033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1247 | 10..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:40 Download gff for
BS08033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17051404..17051454 | 10..61 | 94 | -> | Plus |
3L | 17051861..17051932 | 62..133 | 100 | -> | Plus |
3L | 17052003..17052134 | 134..265 | 100 | -> | Plus |
3L | 17052721..17052878 | 266..423 | 100 | -> | Plus |
3L | 17052955..17053285 | 424..754 | 100 | -> | Plus |
3L | 17054298..17054366 | 755..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:17 Download gff for
BS08033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17044504..17044554 | 10..61 | 94 | -> | Plus |
arm_3L | 17044961..17045032 | 62..133 | 100 | -> | Plus |
arm_3L | 17045103..17045234 | 134..265 | 100 | -> | Plus |
arm_3L | 17045821..17045978 | 266..423 | 100 | -> | Plus |
arm_3L | 17046055..17046385 | 424..754 | 100 | -> | Plus |
arm_3L | 17047398..17047466 | 755..823 | 100 | | Plus |
BS08033.complete Sequence
839 bp (839 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636066
> BS08033.complete
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACTGAAAGCTTTCTAGACCAT
BS08033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 807 | CG7725-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
rogdi-RB | 1032 | CG7725-PB | 226..1032 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 2028 | CG7725-RA | 134..940 | 17..823 | 4035 | 100 | Plus |
rogdi-RB | 2335 | CG7725-RB | 441..1247 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17052955..17053285 | 424..754 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 17052721..17052878 | 266..423 | 790 | 100 | Plus |
3L | 28110227 | 3L | 17052002..17052135 | 133..266 | 670 | 100 | Plus |
3L | 28110227 | 3L | 17051860..17051933 | 61..134 | 370 | 100 | Plus |
3L | 28110227 | 3L | 17054296..17054366 | 753..823 | 355 | 100 | Plus |
3L | 28110227 | 3L | 17051410..17051454 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:08:28 has no hits.
BS08033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:44 Download gff for
BS08033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:29 Download gff for
BS08033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RA | 123..935 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:53 Download gff for
BS08033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 441..1246 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:44 Download gff for
BS08033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RA | 123..935 | 10..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:42 Download gff for
BS08033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 441..1246 | 17..822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:42 Download gff for
BS08033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17052955..17053285 | 424..754 | 100 | -> | Plus |
3L | 17054298..17054365 | 755..822 | 100 | | Plus |
3L | 17052721..17052878 | 266..423 | 100 | -> | Plus |
3L | 17051410..17051454 | 17..61 | 100 | -> | Plus |
3L | 17051861..17051932 | 62..133 | 100 | -> | Plus |
3L | 17052003..17052134 | 134..265 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:53 Download gff for
BS08033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17044510..17044554 | 17..61 | 100 | -> | Plus |
arm_3L | 17044961..17045032 | 62..133 | 100 | -> | Plus |
arm_3L | 17045103..17045234 | 134..265 | 100 | -> | Plus |
arm_3L | 17045821..17045978 | 266..423 | 100 | -> | Plus |
arm_3L | 17046055..17046385 | 424..754 | 100 | -> | Plus |
arm_3L | 17047398..17047465 | 755..822 | 100 | | Plus |
BS08033.pep Sequence
Translation from 16 to 822
> BS08033.pep
MKMLADTEREEALNLQIEFEWVLRQEVHAILKQLRSILVECAHRFPVPLY
ENEGKKTEKFILTVSPDQLKAVLTLTGDAITQADISFKLCKAPSQTQRTS
ITHDSPWKLQQVQDAANHLQTAINHIDDVDDSYHFKTSDEVLHVIGNILD
ALQRGRNSLLVPKKKPIDELIKGRNMKSLVPNLPEDLAVSFYLQSHKLII
AVYQLLNNQGTMRFDSRQAEASVQWLNDVLLLLMNGQKLCQQLKDKISVF
SVYKDFTVGSRSPSALSY*
BS08033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-PA | 268 | CG7725-PA | 1..268 | 1..268 | 1365 | 100 | Plus |
rogdi-PB | 343 | CG7725-PB | 76..343 | 1..268 | 1365 | 100 | Plus |