Clone BS08033 Report

Search the DGRC for BS08033

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptrogdi-RA
Protein status:BS08033.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08033.3prime Sequence

837 bp (836 high quality bases) assembled on 2006-01-06

> BS08033.3prime
ATGGTCTAGAAAGCTTTCAGTAGGAAAGTGCCGAGGGCGAACGCGAGCCA
ACTGTGAAATCTTTGTACACCGAAAACACAGATATCTTGTCTTTTAATTG
CTGGCACAGTTTCTGGCCATTCATCAGCAGCAGTAGCACGTCGTTAAGCC
ACTGGACAGAGGCCTCCGCTTGGCGGGAATCGAAGCGCATTGTGCCCTGG
TTGTTCAGCAGCTGGTAGACGGCAATGATCAGCTTGTGGCTCTGCAGGTA
GAAGCTAACGGCCAAATCCTCGGGCAGATTGGGCACCAGCGACTTCATAT
TGCGCCCTTTGATCAGCTCATCGATGGGCTTCTTTTTGGGCACCAGCAAA
CTGTTTCTGCCCCGCTGCAGGGCATCCAGAATGTTGCCTATCACATGCAG
CACTTCGTCGGAGGTTTTGAAGTGATAAGAGTCGTCGACATCGTCTATGT
GGTTGATGGCGGTCTGCAGATGATTGGCCGCATCCTGGACCTGCTGCAAC
TTCCAGGGAGAGTCATGTGTAATGGAGGTACGTTGCGTTTGGCTCGGTGC
CTTGCACAGCTTAAAGCTAATGTCAGCCTGGGTGATGGCATCGCCCGTTA
GGGTCAGCACGGCCTTCAGCTGATCGGGCGACACGGTGAGTATGAACTTC
TCAGTCTTCTTTCCCTCGTTCTCGTAAAGGGGCACCGGAAATCGATGAGC
GCACTCCACCAGAATGCTCCTTAATTGCTTCAGTATCGCGTGTACTTCTT
GGCGCAGCACCCACTCGAACTCGATTTGCAGGTTGAGGGCTTCCTCACGC
TCCGTGTCCGCGAGCATTTTCATGTCGACTGATAACT

BS08033.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7725-PB 1032 rogdi-RB 226..1032 823..17 4035 100 Minus
CG7725-PA 807 rogdi-RA 1..807 823..17 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 2028 CG7725-RA 134..940 823..17 4035 100 Minus
rogdi-RB 2335 CG7725-RB 441..1247 823..17 4035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17052955..17053285 416..86 1655 100 Minus
3L 28110227 3L 17052721..17052878 574..417 790 100 Minus
3L 28110227 3L 17052002..17052135 707..574 670 100 Minus
3L 28110227 3L 17051860..17051933 779..706 370 100 Minus
3L 28110227 3L 17054296..17054366 87..17 355 100 Minus
3L 28110227 3L 17051410..17051454 823..779 225 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:09:20 has no hits.

BS08033.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:27 Download gff for BS08033.3prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-PA 1..807 17..823 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:53 Download gff for BS08033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7725-PA 1..807 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:41:06 Download gff for BS08033.3prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1247 17..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:04:21 Download gff for BS08033.3prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1247 17..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:04:21 Download gff for BS08033.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17052003..17052134 575..706 100 -> Minus
3L 17052721..17052878 417..574 100 -> Minus
3L 17052955..17053285 86..416 100 -> Minus
3L 17054298..17054366 17..85 100   Minus
3L 17051404..17051454 779..830 94 -> Minus
3L 17051861..17051932 707..778 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:41:06 Download gff for BS08033.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17044504..17044554 779..830 94 -> Minus
arm_3L 17044961..17045032 707..778 100 -> Minus
arm_3L 17045103..17045234 575..706 100 -> Minus
arm_3L 17045821..17045978 417..574 100 -> Minus
arm_3L 17046055..17046385 86..416 100 -> Minus
arm_3L 17047398..17047466 17..85 100   Minus

BS08033.5prime Sequence

837 bp (836 high quality bases) assembled on 2006-01-06

> BS08033.5prime
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACTGAAAGCTTTCTAGACC

BS08033.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7725-PB 1032 rogdi-RB 226..1032 17..823 4035 100 Plus
CG7725-PA 807 rogdi-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 2028 CG7725-RA 134..940 17..823 4035 100 Plus
rogdi-RB 2335 CG7725-RB 441..1247 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17052955..17053285 424..754 1655 100 Plus
3L 28110227 3L 17052721..17052878 266..423 790 100 Plus
3L 28110227 3L 17052002..17052135 133..266 670 100 Plus
3L 28110227 3L 17051860..17051933 61..134 370 100 Plus
3L 28110227 3L 17054296..17054366 753..823 355 100 Plus
3L 28110227 3L 17051410..17051454 17..61 225 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:29:20 has no hits.

BS08033.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:28 Download gff for BS08033.5prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:54 Download gff for BS08033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7725-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:17 Download gff for BS08033.5prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1247 10..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:40 Download gff for BS08033.5prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1247 10..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:40 Download gff for BS08033.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17051404..17051454 10..61 94 -> Plus
3L 17051861..17051932 62..133 100 -> Plus
3L 17052003..17052134 134..265 100 -> Plus
3L 17052721..17052878 266..423 100 -> Plus
3L 17052955..17053285 424..754 100 -> Plus
3L 17054298..17054366 755..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:17 Download gff for BS08033.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17044504..17044554 10..61 94 -> Plus
arm_3L 17044961..17045032 62..133 100 -> Plus
arm_3L 17045103..17045234 134..265 100 -> Plus
arm_3L 17045821..17045978 266..423 100 -> Plus
arm_3L 17046055..17046385 424..754 100 -> Plus
arm_3L 17047398..17047466 755..823 100   Plus

BS08033.complete Sequence

839 bp (839 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636066

> BS08033.complete
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACTGAAAGCTTTCTAGACCAT

BS08033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 807 CG7725-PA 1..807 17..823 4035 100 Plus
rogdi-RB 1032 CG7725-PB 226..1032 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 2028 CG7725-RA 134..940 17..823 4035 100 Plus
rogdi-RB 2335 CG7725-RB 441..1247 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17052955..17053285 424..754 1655 100 Plus
3L 28110227 3L 17052721..17052878 266..423 790 100 Plus
3L 28110227 3L 17052002..17052135 133..266 670 100 Plus
3L 28110227 3L 17051860..17051933 61..134 370 100 Plus
3L 28110227 3L 17054296..17054366 753..823 355 100 Plus
3L 28110227 3L 17051410..17051454 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:08:28 has no hits.

BS08033.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:44 Download gff for BS08033.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:29 Download gff for BS08033.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 123..935 10..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:53 Download gff for BS08033.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 441..1246 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:44 Download gff for BS08033.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 123..935 10..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:42 Download gff for BS08033.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 441..1246 17..822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:42 Download gff for BS08033.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17052955..17053285 424..754 100 -> Plus
3L 17054298..17054365 755..822 100   Plus
3L 17052721..17052878 266..423 100 -> Plus
3L 17051410..17051454 17..61 100 -> Plus
3L 17051861..17051932 62..133 100 -> Plus
3L 17052003..17052134 134..265 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:53 Download gff for BS08033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17044510..17044554 17..61 100 -> Plus
arm_3L 17044961..17045032 62..133 100 -> Plus
arm_3L 17045103..17045234 134..265 100 -> Plus
arm_3L 17045821..17045978 266..423 100 -> Plus
arm_3L 17046055..17046385 424..754 100 -> Plus
arm_3L 17047398..17047465 755..822 100   Plus

BS08033.pep Sequence

Translation from 16 to 822

> BS08033.pep
MKMLADTEREEALNLQIEFEWVLRQEVHAILKQLRSILVECAHRFPVPLY
ENEGKKTEKFILTVSPDQLKAVLTLTGDAITQADISFKLCKAPSQTQRTS
ITHDSPWKLQQVQDAANHLQTAINHIDDVDDSYHFKTSDEVLHVIGNILD
ALQRGRNSLLVPKKKPIDELIKGRNMKSLVPNLPEDLAVSFYLQSHKLII
AVYQLLNNQGTMRFDSRQAEASVQWLNDVLLLLMNGQKLCQQLKDKISVF
SVYKDFTVGSRSPSALSY*

BS08033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-PA 268 CG7725-PA 1..268 1..268 1365 100 Plus
rogdi-PB 343 CG7725-PB 76..343 1..268 1365 100 Plus