Clone Sequence Records
BS08034.3prime Sequence
912 bp (773 high quality bases) assembled on 2006-01-06
> BS08034.3prime
ATGGTCTAGAAAGCTTTTAAAAACTCTGTAAGCATTTCATGATGGTGTCT
CGCAGCTTGAGCCGGGTTGTTGGCTTTCCGCCGCAGATAATATGCGTCTC
GTTGTCCTCGAACTTAATGACTGTGTCCTCATTGACAAGGTTCAGAGTCA
GAGCGCCGCCAGTGCGGTCTAGCTTGATGTTGGAGAAGCCATCCTGTGCC
AGCTTCTTCATCACTGCATCTACATCAATGCTGCCATACTCGTATTTGAC
GTTCTTCAGCACATCCTCCTTTGTCGGAGCGCTGTTGCTCGAGATGGTCT
CGTCTTTAACGCTATCCGCACATGGCTGGATGCAGTGGACCTTGTCCTTA
ACTTGCAAAACTCCTGTCAATGTGGAGAAGGTCACGCCGGCCGCCACCTC
CTTTGGCGATATCTTTTGGGCCAGTTCCGAGGTAATGTAAATTCGATCCA
GCTTCCGTTTTAATGGCAGACGTATGATCTCGCCGCACTTGAACGTTATT
ATCTTCTTATCCGGCTGTTCAATGAACAAATTTGGGGCCGAGGGATGTGG
TTTTGTGTATGCCTCTGGGATGACAAGCACATTTGGTTTCAACTCCTTGA
TCAGCTTATTTGCCTGCTGATAATTCAAAGAGGTGTCGATGGGACAGTAA
AAAGCCTTCATGGCCAGTGGTTGGAAGGGCGCCAGTACTTGCAGATACGG
AAAGTCCGGCTCCGTGAATATGATGGAGTTGTTAGGGTTATTGCCCCACA
TCTCGATAAAGTGAACAGCGTCGCCGAAACGCAAGCTAGGATGGCCACAA
AAGACCACGCAGGGCTGCCGGAAGTCCTTGCTAAAGCCCTCGGAGAACAC
ATGGTTATAGTGCTTCAGCTTGTTGTTGCGAAGGTAAAAGGCATGTGGGA
AAGGATCGTCTG
BS08034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5222-PA | 1965 | CG5222-RA | 1070..1965 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 2078 | CG5222-RA | 1134..2031 | 912..15 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16103479..16104281 | 15..817 | 4015 | 100 | Plus |
| 3L | 28110227 | 3L | 16104336..16104433 | 815..912 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:27:49 has no hits.
BS08034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:29 Download gff for
BS08034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1070..1965 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:56 Download gff for
BS08034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1070..1965 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:04:16 Download gff for
BS08034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 1134..2031 | 15..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:49:56 Download gff for
BS08034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 1134..2031 | 15..912 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:49:56 Download gff for
BS08034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16103479..16104278 | 15..814 | 100 | <- | Plus |
| 3L | 16104336..16104433 | 815..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:04:16 Download gff for
BS08034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16096579..16097378 | 15..814 | 100 | <- | Plus |
| arm_3L | 16097436..16097533 | 815..912 | 100 | | Plus |
BS08034.5prime Sequence
906 bp (874 high quality bases) assembled on 2006-01-06
> BS08034.5prime
GAAGTTATCAGTCGACATGCGATTGTATTGTCTCAGCGGGGACCTGGCCA
AGCCATGTTATATCATTACCTTCAAGGGCCTGCGGATTATGCTGGACTGC
GGTCTCACGGAGCAGACAGTCCTGAATTTCCTTCCGCTGCCCTTCGTTCA
GTCACTGAAGTGGTCCAATCTGCCCAACTTCGTGCCCAGTCGGGATCATG
ATCCCCAAATGGATGGCGAGTTGAAGGACTGCTGTGGCCGGGTTTTCGTG
GACTCGACGCCCGAGTTTAATCTACCCATGGACAAAATGCTGGATTTCAG
CGAAGTGGATGTGATACTTATCTCGAATTATCTTAATATGCTGGCCTTGC
CGTATATCACGGAAAACACGGGGTTCAAGGGCAAAGTCTATGCCACGGAG
CCAACGCTGCAGATCGGCCGATTTTTCCTGGAGGAGCTGGTGGACTATAT
CGAAGTGTCGCCCAAGGCGTGCACCGCGCGCTTGTGGAAGGAGAAGCTTC
ATCTGCTGCCCAGTCCCTTGAGCGAAGCCTTTCGCGCCAAGAAGTGGCGC
ACTATCTTTAGTCTTAAGGATGTCCAAGGCAGTCTGTCCAAGGTGACCAT
CATGGGCTACGACGAGAAGCTGGACATCCTCGGAGCTTTTATCGCCACTC
CTGTCAGCTCGGGCTACTGCCTGGGCTCGAGCAACTGGGTACTGAGCACG
GCGCATGAAAAGATTTGCTATGTCAGTGGTTCCTCCACGTTGACCACACA
TCCGCGGCCCATCAATCAGTCGGCGCTGAAGCACGCCGATGTACTCATTA
TGACCGGACTGACGCANGCGCCGACGGTAAATCCGGACACGAAGCTGGGC
GAGCTCTGCATGAATGTGGCCTTGACGATCCGCAACAATGGGTCTGCCTT
GATTCC
BS08034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5222-PA | 1965 | CG5222-RA | 1..890 | 17..906 | 4431 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 2078 | CG5222-RA | 65..954 | 17..906 | 4439 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16104613..16105494 | 906..25 | 4399 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-13 08:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10700..10873 | 253..85 | 128 | 57.6 | Minus |
BS08034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:31 Download gff for
BS08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:57 Download gff for
BS08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:47 Download gff for
BS08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..954 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:03:24 Download gff for
BS08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..954 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:03:24 Download gff for
BS08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16104613..16105500 | 20..906 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:47 Download gff for
BS08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16097713..16098600 | 20..906 | 99 | -> | Minus |
BS08034.complete Sequence
1997 bp assembled on 2008-01-03
GenBank Submission: FJ636067
> BS08034.complete
GAAGTTATCAGTCGACATGCGATTGTATTGTCTCAGCGGGGACCTGGCCA
AGCCATGTTATATCATTACCTTCAAGGGCCTGCGGATTATGCTGGACTGC
GGTCTCACGGAGCAGACAGTCCTGAATTTCCTTCCGCTGCCCTTCGTTCA
GTCACTGAAGTGGTCCAATCTGCCCAACTTCGTGCCCAGTCGGGATCATG
ATCCCCAAATGGATGGCGAGTTGAAGGACTGCTGTGGCCGGGTTTTCGTG
GACTCGACGCCCGAGTTTAATCTACCCATGGACAAAATGCTGGATTTCAG
CGAAGTGGATGTGATACTTATCTCGAATTATCTTAATATGCTGGCCTTGC
CGTATATCACGGAAAACACGGGGTTCAAGGGCAAAGTCTATGCCACGGAG
CCAACGCTGCAGATCGGCCGATTTTTCCTGGAGGAGCTGGTGGACTATAT
CGAAGTGTCGCCCAAGGCGTGCACCGCGCGCTTGTGGAAGGAGAAGCTTC
ATCTGCTGCCCAGTCCCTTGAGCGAAGCCTTTCGCGCCAAGAAGTGGCGC
ACTATCTTTAGTCTTAAGGATGTCCAAGGCAGTCTGTCCAAGGTGACCAT
CATGGGCTACGACGAGAAGCTGGACATCCTCGGAGCTTTTATCGCCACTC
CTGTCAGCTCGGGCTACTGCCTGGGCTCGAGCAACTGGGTACTGAGCACG
GCGCATGAAAAGATTTGCTATGTCAGTGGTTCCTCCACGTTGACCACACA
TCCGCGGCCCATCAATCAGTCGGCGCTGAAGCACGCCGATGTACTCATTA
TGACCGGACTGACGCAGGCGCCGACGGTAAATCCGGACACGAAGCTGGGC
GAGCTCTGCATGAATGTGGCCTTGACGATCCGCAACAATGGGTCTGCCTT
GATTCCCTGTTATCCTTCGGGCGTTGTCTATGACCTCTTTGAGTGCCTCA
CCCAGAATTTGGAAAACGCTGGCCTAAACAATGTTCCCATGTTCTTTATT
TCCCCTGTGGCAGACAGCTCCTTGGCGTATTCTAATATCCTGGCCGAGTG
GCTTAGTTCCGCCAAGCAGAACAAAGTGTATCTTCCAGACGATCCTTTCC
CACATGCCTTTTACCTTCGCAACAACAAGCTGAAGCACTATAACCATGTG
TTCTCCGAGGGCTTTAGCAAGGACTTCCGGCAGCCCTGCGTGGTCTTTTG
TGGCCATCCTAGCTTGCGTTTCGGCGACGCTGTTCACTTTATCGAGATGT
GGGGCAATAACCCTAACAACTCCATCATATTCACGGAGCCGGACTTTCCG
TATCTGCAAGTACTGGCGCCCTTCCAACCACTGGCCATGAAGGCTTTTTA
CTGTCCCATCGACACCTCTTTGAATTATCAGCAGGCAAATAAGCTGATCA
AGGAGTTGAAACCAAATGTGCTTGTCATCCCAGAGGCATACACAAAACCA
CATCCCTCGGCCCCAAATTTGTTCATTGAACAGCCGGATAAGAAGATAAT
AACGTTCAAGTGCGGCGAGATCATACGTCTGCCATTAAAACGGAAGCTGG
ATCGAATTTACATTACCTCGGAACTGGCCCAAAAGATATCGCCAAAGGAG
GTGGCGGCCGGCGTGACCTTCTCCACATTGACAGGAGTTTTGCAAGTTAA
GGACAAGGTCCACTGCATCCAGCCATGTGCGGATAGCGTTAAAGACGAGA
CCATCTCGAGCAACAGCGCTCCGACAAAGGAGGATGTGCTGAAGAACGTC
AAATACGAGTATGGCAGCATTGATGTAGATGCAGTGATGAAGAAGCTGGC
ACAGGATGGCTTCTCCAACATCAAGCTAGACCGCACTGGCGGCGCTCTGA
CTCTGAACCTTGTCAATGAGGACACAGTCATTAAGTTCGAGGACAACGAG
ACGCATATTATCTGCGGCGGAAAGCCAACAACCCGGCTCAAGCTGCGAGA
CACCATCATGAAATGCTTACAGAGTTTTTAAAAGCTTTCTAGACCAT
BS08034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 1965 | CG5222-PA | 1..1965 | 17..1981 | 9825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 2078 | CG5222-RA | 65..2031 | 17..1983 | 9835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16104336..16105494 | 1183..25 | 5795 | 100 | Minus |
| 3L | 28110227 | 3L | 16103479..16104281 | 1983..1181 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:11:42 has no hits.
BS08034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:47 Download gff for
BS08034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-RA | 1..1965 | 17..1981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:26 Download gff for
BS08034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-RA | 49..2011 | 17..1979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:13 Download gff for
BS08034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..2027 | 17..1979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:47 Download gff for
BS08034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-RA | 49..2015 | 17..1983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:32 Download gff for
BS08034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..2027 | 17..1979 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:32 Download gff for
BS08034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16103483..16104278 | 1184..1979 | 100 | <- | Minus |
| 3L | 16104336..16105498 | 17..1183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:13 Download gff for
BS08034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16096583..16097378 | 1184..1979 | 100 | <- | Minus |
| arm_3L | 16097436..16098598 | 17..1183 | 99 | | Minus |
BS08034.pep Sequence
Translation from 16 to 1980
> BS08034.pep
MRLYCLSGDLAKPCYIITFKGLRIMLDCGLTEQTVLNFLPLPFVQSLKWS
NLPNFVPSRDHDPQMDGELKDCCGRVFVDSTPEFNLPMDKMLDFSEVDVI
LISNYLNMLALPYITENTGFKGKVYATEPTLQIGRFFLEELVDYIEVSPK
ACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQGSLSKVTIMGYDE
KLDILGAFIATPVSSGYCLGSSNWVLSTAHEKICYVSGSSTLTTHPRPIN
QSALKHADVLIMTGLTQAPTVNPDTKLGELCMNVALTIRNNGSALIPCYP
SGVVYDLFECLTQNLENAGLNNVPMFFISPVADSSLAYSNILAEWLSSAK
QNKVYLPDDPFPHAFYLRNNKLKHYNHVFSEGFSKDFRQPCVVFCGHPSL
RFGDAVHFIEMWGNNPNNSIIFTEPDFPYLQVLAPFQPLAMKAFYCPIDT
SLNYQQANKLIKELKPNVLVIPEAYTKPHPSAPNLFIEQPDKKIITFKCG
EIIRLPLKRKLDRIYITSELAQKISPKEVAAGVTFSTLTGVLQVKDKVHC
IQPCADSVKDETISSNSAPTKEDVLKNVKYEYGSIDVDAVMKKLAQDGFS
NIKLDRTGGALTLNLVNEDTVIKFEDNETHIICGGKPTTRLKLRDTIMKC
LQSF*
BS08034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-PA | 654 | CG5222-PA | 1..654 | 1..654 | 3453 | 100 | Plus |
| Cpsf73-PA | 684 | CG7698-PA | 28..422 | 9..471 | 205 | 20.7 | Plus |
| Cpsf100-PA | 756 | CG1957-PA | 5..362 | 1..428 | 202 | 22.5 | Plus |
