Clone BS08035 Report

Search the DGRC for BS08035

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptHmgs-RB
Protein status:BS08035.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08035.3prime Sequence

917 bp (832 high quality bases) assembled on 2006-01-06

> BS08035.3prime
ATGGTCTAGAAAGCTTTTAGTGCACCCCATTGCTGATGGTCGGTGTGCGC
TCGTAGGTGCGTCTATGCAGCGCATCCACGTCCTTCAGGTAGTAGGTGCC
GGGAAACAGTGCGGAGATGCTGCCCGTTGGCGTGTAGGGCGCCGCATGGT
TGTTCTTCTCCCGCACCTCCATCAGCGCGGAGAACTGCTCGGGCGCAACC
TTCTCCCGTGAATTCAGCAACGGCTGCACGTAGTCCAGCTGCGAGACGAA
CTTTTCGAAAGCAGCTGCATCCTGGGTCACGCTGATCGAGTACATGGAAG
CAGCCAGTCCGGATCCGTAGGAGAACAAACCAATGCGCTTTCCCACCAGC
TCCTGGGCTGGTCCGCTAATCAACAGAGACACCAAACCGGAGTACACCGA
GGGTGTGTACATATTGCCCACTTGGTTGGCCAGCAGCAGCGATTTCTTGG
TCTTGCTGGCAAAGATGTTGGCGGACTGCGTCATGAAGGCCTTCTCCACA
TCGCGATCAAAGTAGGTGCTCTCCAGGGTAGCGGTATTAAAACGTTCCAG
GTCGGGAAACTGCTTCGTTCGCTCCTCCTCACTGCTCAGCAGGAAATCGT
TGAAGCTCAGGCGACCCACAGATTTTTGCACCAACTTGCAGAACGGTGTG
TGGAATAGGATAGCATCGAAGGTGCTCAGGCTGGCCGGCTGCTTGGAAGT
ATCCTTCTGCTGCTGGTCGAACTTCTTGCGATACAGCCTGTAGCAGGTGT
CCAGAGCAGAAAGGTAGCACTGAATAGAGAGCTTTCCATCTACCGTTGGG
TATTCGGAGCTGAGGTCCGGCTTGTAAAAGTCGTAAGCGTGCTCCATGTG
CGTTGCGCGTAGTCCACGATCGAGGATAAGCGGCGCATTTGGACCCACCA
GCATAGCCACAGCACCC

BS08035.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4311-PA 1398 Hmgs-RA 498..1398 917..17 4480 99.8 Minus
CG4311-PC 1398 Hmgs-RC 498..1398 917..17 4480 99.8 Minus
CG4311-PB 1398 Hmgs-RB 498..1398 917..17 4480 99.8 Minus
CG4311-PD 1398 Hmgs-RD 498..1398 917..17 4480 99.8 Minus
CG4311-PE 1398 Hmgs-RE 498..1398 917..17 4480 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1900 CG4311-RF 635..1535 917..17 4490 99.9 Minus
Hmgs-RE 1803 CG4311-RE 538..1438 917..17 4490 99.9 Minus
Hmgs-RD 1879 CG4311-RD 614..1514 917..17 4490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16339977..16340877 917..17 4490 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 04:24:57 has no hits.

BS08035.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:32 Download gff for BS08035.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-PA 498..1398 17..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:27:59 Download gff for BS08035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4311-PE 498..1398 17..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:33 Download gff for BS08035.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 614..1514 17..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:17 Download gff for BS08035.3prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 614..1514 17..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:17 Download gff for BS08035.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16339977..16340877 17..917 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:33 Download gff for BS08035.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12227482..12228382 17..917 99   Minus

BS08035.5prime Sequence

935 bp (831 high quality bases) assembled on 2006-01-06

> BS08035.5prime
GAAGTTATCAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATAC
GCGCCATCGAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTG
GAGACCTTCGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCA
GGCCAAGATGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCC
TGACGGTTGTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAG
ATCGGACGACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTC
GGTGAAGTCCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACA
TCGAGGGCATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTC
TTCAATGCCGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGC
TTTGGCCGTTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCC
CAACTGGTGGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCG
CTTATCCTCGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGA
CTTTTACAAGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGC
TCTCTATTCAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTAT
CGCAAGAAGTTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAG
CCTGAGCACCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGG
TGCAAAAATCTGTGGGTCGCCTGAGCTTTCACGATTTCCTGCTGAGCAGT
GAGGAGGAGCGAACGAAGCAGTTTCCCGACCTGGAACGTTTTATACCGCT
ACCCTGGAGAGCACCTACTTTGATCGCGATGTGGA

BS08035.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4311-PA 1398 Hmgs-RA 1..877 17..893 4335 99.7 Plus
CG4311-PC 1398 Hmgs-RC 1..877 17..893 4335 99.7 Plus
CG4311-PB 1398 Hmgs-RB 1..877 17..893 4335 99.7 Plus
CG4311-PD 1398 Hmgs-RD 1..877 17..893 4335 99.7 Plus
CG4311-PE 1398 Hmgs-RE 1..877 17..893 4335 99.7 Plus
CG4311-PA 1398 Hmgs-RA 878..920 893..935 215 100 Plus
CG4311-PC 1398 Hmgs-RC 878..920 893..935 215 100 Plus
CG4311-PB 1398 Hmgs-RB 878..920 893..935 215 100 Plus
CG4311-PD 1398 Hmgs-RD 878..920 893..935 215 100 Plus
CG4311-PE 1398 Hmgs-RE 878..920 893..935 215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1900 CG4311-RF 137..1057 16..935 4550 99.7 Plus
Hmgs-RE 1803 CG4311-RE 40..960 16..935 4550 99.7 Plus
Hmgs-RD 1879 CG4311-RD 116..1036 16..935 4550 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16339479..16340399 16..935 4525 99.7 Plus
Blast to na_te.dros performed 2015-02-10 03:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1400..1457 295..352 110 65.5 Plus
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 2430..2467 337..374 109 76.3 Plus

BS08035.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:32 Download gff for BS08035.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-PB 1..919 17..934 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:01 Download gff for BS08035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4311-PC 1..919 17..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:59 Download gff for BS08035.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 112..1035 9..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:12 Download gff for BS08035.5prime
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 112..1035 9..934 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:12 Download gff for BS08035.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16339475..16340398 9..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:59 Download gff for BS08035.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12226980..12227903 9..934 99   Plus

BS08035.complete Sequence

1430 bp (1430 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636068

> BS08035.complete
GAAGTTATCAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATAC
GCGCCATCGAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTG
GAGACCTTCGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCA
GGCCAAGATGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCC
TGACGGTTGTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAG
ATCGGACGACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTC
GGTGAAGTCCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACA
TCGAGGGCATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTC
TTCAATGCCGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGC
TTTGGCCGTTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCC
CAACTGGTGGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCG
CTTATCCTCGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGA
CTTTTACAAGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGC
TCTCTATTCAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTAT
CGCAAGAAGTTCGACCAGCAGCAGAAGGATACTTCCAAGCAGCCGGCCAG
CCTGAGCACCTTCGATGCTATCCTATTCCACACACCGTTCTGCAAGTTGG
TGCAAAAATCTGTGGGTCGCCTGAGCTTCAACGATTTCCTGCTGAGCAGT
GAGGAGGAGCGAACGAAGCAGTTTCCCGACCTGGAACGTTTTAATACCGC
TACCCTGGAGAGCACCTACTTTGATCGCGATGTGGAGAAGGCCTTCATGA
CGCAGTCCGCCAACATCTTTGCCAGCAAGACCAAGAAATCGCTGCTGCTG
GCCAACCAAGTGGGCAATATGTACACACCCTCGGTGTACTCCGGTTTGGT
GTCTCTGTTGATTAGCGGACCAGCCCAGGAGCTGGTGGGAAAGCGCATTG
GTTTGTTCTCCTACGGATCCGGACTGGCTGCTTCCATGTACTCGATCAGC
GTGACCCAGGATGCAGCTGCTTTCGAAAAGTTCGTCTCGCAGCTGGACTA
CGTGCAGCCGTTGCTGAATTCACGGGAGAAGGTTGCGCCCGAGCAGTTCT
CCGCGCTGATGGAGGTGCGGGAGAAGAACAACCATGCGGCGCCCTACACG
CCAACGGGCAGCATCTCCGCACTGTTTCCCGGCACCTACTACCTGAAGGA
CGTGGATGCGCTGCATAGACGCACCTACGAGCGCACACCGACCATCAGCA
ATGGGGTGCACTAAAAGCTTTCTAGACCAT

BS08035.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1398 CG4311-PF 1..1398 17..1414 6990 100 Plus
Hmgs-RE 1398 CG4311-PE 1..1398 17..1414 6990 100 Plus
Hmgs-RD 1398 CG4311-PD 1..1398 17..1414 6990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-RF 1900 CG4311-RF 137..1535 16..1414 6995 100 Plus
Hmgs-RE 1803 CG4311-RE 40..1438 16..1414 6995 100 Plus
Hmgs-RD 1879 CG4311-RD 116..1514 16..1414 6995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16339479..16340877 16..1414 6995 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:23:55 has no hits.

BS08035.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:45 Download gff for BS08035.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:56 Download gff for BS08035.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 147..1549 9..1414 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:42 Download gff for BS08035.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 117..1512 17..1412 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:45 Download gff for BS08035.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RB 147..1549 9..1414 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:47 Download gff for BS08035.complete
Subject Subject Range Query Range Percent Splice Strand
Hmgs-RD 117..1512 17..1412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:47 Download gff for BS08035.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16339480..16340875 17..1412 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:42 Download gff for BS08035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12226985..12228380 17..1412 100   Plus

BS08035.pep Sequence

Translation from 16 to 1413

> BS08035.pep
MASHWPENVGIRAIEILFPSQYVDQTELETFDGASAGKYTIGLGQAKMGF
CSDREDVNSLCLTVVSRLLERQHVKHSEIGRLEVGTETIVDKSKSVKSVL
MQLFAESGNTDIEGIDTTNACYGGTAALFNAVNWVESSSWDGRLALAVCA
DIAVYAKGAARPTGGAGAVAMLVGPNAPLILDRGLRATHMEHAYDFYKPD
LSSEYPTVDGKLSIQCYLSALDTCYRLYRKKFDQQQKDTSKQPASLSTFD
AILFHTPFCKLVQKSVGRLSFNDFLLSSEEERTKQFPDLERFNTATLEST
YFDRDVEKAFMTQSANIFASKTKKSLLLANQVGNMYTPSVYSGLVSLLIS
GPAQELVGKRIGLFSYGSGLAASMYSISVTQDAAAFEKFVSQLDYVQPLL
NSREKVAPEQFSALMEVREKNNHAAPYTPTGSISALFPGTYYLKDVDALH
RRTYERTPTISNGVH*

BS08035.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hmgs-PF 465 CG4311-PF 1..465 1..465 2386 100 Plus
Hmgs-PE 465 CG4311-PE 1..465 1..465 2386 100 Plus
Hmgs-PD 465 CG4311-PD 1..465 1..465 2386 100 Plus
Hmgs-PB 465 CG4311-PB 1..465 1..465 2386 100 Plus
Hmgs-PC 465 CG4311-PC 1..465 1..465 2386 100 Plus