Clone Sequence Records
BS08036.3prime Sequence
904 bp (889 high quality bases) assembled on 2006-01-06
> BS08036.3prime
ATGGTCTAGAAAGCTTTTACTTCAGCCCCAGATCCTTTTCAATTGTATGC
GAGCAGACGGCCATCATCTGATCCTTGACGTTGACGAAGTTGCGAATAGC
AGCGGGCTTGGCCTCTGGCCAACCAGCCAGATCGCGGTAGATGGGGCGAC
AGAACTTCATGCGGAAGTTGGAGTTGGCAAATTCGAGGATCTCATCCAGA
CGTTTTATCAAGCGTGCACGGATAATCAAGCGATTCAATCGGAAGCGAAC
CTCGGCGTTCTTCGAACTCTTCAGGTTGTATGTGGATTCCAGTAGATTAA
TCTTGCCTTCGTTCAAATCGACAATGTCCTTGCTCTCGATCAGTTTGCCC
AGGAAGTCAATGAGCTGGTGAATGGAAATGGTCGTCTTGATCTCCGCACT
GTCAGCCAATTCAGCCACGCTCTTAGAGCTCCAGAGACTGGCCAATTCCT
TGGTCACATTAGCGAGGGATTCATCGAAGTTCGGAATGACGGGTGGCATT
CCCTCGGATTTCAGCCACAAGTCCCAGTCGACAGCACTCAGCTTATCCTT
CTTGTCCGTGTCGATGAAGTAGTCATATAAAGCACTCTGGAAATCTTTCG
TCTCAATCGACTTGTAGGCGTATTTTTTCAGATAGTCTCTCAGGAAAGGC
TCAAAAACGGTTGGTCCGCCAAACAAGTCCTCCAAGTAGCGCAGGAACGT
CGAACCCTTAATGTAAGGCACTGAAGAGAAGGCATCGTCGGGTCCACAGT
TGGATAGATCCACCACCAGCTTAGTCAGCTCGGGTGTCTTGTTGAGCTGA
GTGCGGATGCACTCCTGCAGATCCGTGAGATTGCTGAGCATTTTAAAGTC
CAACTCCTTGGCGCCCTGCATTCTTCCCACGATCTTGGATTCCACGAACA
CAGT
BS08036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-PD | 1842 | CG10602-RD | 955..1842 | 904..17 | 4415 | 99.8 | Minus |
| CG10602-PC | 1842 | CG10602-RC | 955..1842 | 904..17 | 4415 | 99.8 | Minus |
| CG10602-PB | 1842 | CG10602-RB | 955..1842 | 904..17 | 4415 | 99.8 | Minus |
| CG10602-PA | 2055 | CG10602-RA | 1168..2055 | 904..17 | 4415 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 1256..2144 | 904..16 | 4430 | 99.9 | Minus |
| CG10602-RC | 2126 | CG10602-RC | 1112..2000 | 904..16 | 4430 | 99.9 | Minus |
| CG10602-RD | 2172 | CG10602-RD | 1158..2046 | 904..16 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18855252..18856077 | 16..841 | 4115 | 99.9 | Plus |
| 2L | 23513712 | 2L | 18856143..18856205 | 842..904 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:41:28 has no hits.
BS08036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:34 Download gff for
BS08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PB | 955..1842 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:03 Download gff for
BS08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PA | 1168..2055 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:15 Download gff for
BS08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RD | 1158..2049 | 12..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:43 Download gff for
BS08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RD | 1158..2049 | 12..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:43 Download gff for
BS08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18855249..18856077 | 12..841 | 99 | <- | Plus |
| 2L | 18856143..18856205 | 842..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:15 Download gff for
BS08036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18855249..18856077 | 12..841 | 99 | <- | Plus |
| arm_2L | 18856143..18856205 | 842..904 | 100 | | Plus |
BS08036.5prime Sequence
952 bp (770 high quality bases) assembled on 2006-01-06
> BS08036.5prime
GAAGTTATCAGTCGACATGTCCATCGCGAAGCGTGTGCAGCAATGGGCAA
CGTTCGCGCGCACTTGGCACATTTACGATTGCACCTGGCAGAATCCATTC
GAGTCGGCAAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCAT
TTACCACCCAATGATCTCTACTCGCGGCTTGTGCACTTCACACAAACTAC
TCCCGATTTACCAAGTACAAAAACGCAACATGGGTCGCTTAGGAGTCGTG
GATCCCAGTTCTTACTCGCAGCCCGATTTGATCACCACTGAGCACAGTGC
TCTCAACTGGAAGATCGACTTTGCAGCAACCAAAATCCAAGGAAGCGTGC
TCCATCGCTTCAAGGTGTTGACTGCCAATCTGGACAAAATTCTCCTTGAT
GTCCGCGACATCAATGTAACCAATGCCACGCTGCTGGCCGGAGGCAGTGA
GCTCCCGATCAACTTCTTTATCAGCGATGCCGTCGATGATATTGGCCAGA
AGCTAACGCTGGAGTTGCCATCTGGAACGGCTAAGGGAAGCCTTAACGTT
CGCATCGATTACGAGACTTCAAGCAGCGCCAGTGGGTTGCAGTGGCTGAA
TCCCACCCAGACTTTGGGCAAGGAGCATCCTTATATGTTCTCCCAATGCC
AGGCAATCCACGCTCGCTCGGTGATTCCCTGCCAAGACACGCCAGCTGTT
AAGTTTACCTATGATGCCACAGTGGAGCATCCCAGCGAGCTCACGGCCCT
GATGAGCGCCCTTATCGATAAGAAGGAACCGGGAAAGACACTATTCAAGC
AGGAGGTGCCCATTCCCGCTTATCTGGTGGCCATTGCCATTGGCAAATTG
GTTTCCCGCCCGCTGGGGGAGAACTCCAGTGTCTGGGCTGAAGAAGCCAT
CGTGGATGCCTGCGCCGAGGAGTTTTCCGAAACAGCTACCATGCTAAAGA
CT
BS08036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-PA | 2055 | CG10602-RA | 1..936 | 17..952 | 4630 | 99.7 | Plus |
| CG10602-PD | 1842 | CG10602-RD | 1..723 | 230..952 | 3590 | 99.8 | Plus |
| CG10602-PC | 1842 | CG10602-RC | 1..723 | 230..952 | 3590 | 99.8 | Plus |
| CG10602-PB | 1842 | CG10602-RB | 1..723 | 230..952 | 3590 | 99.8 | Plus |
| CG10603-PA | 537 | mRpL13-RA | 1..148 | 17..164 | 715 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 89..1024 | 17..952 | 4650 | 99.8 | Plus |
| CG10602-RC | 2126 | CG10602-RC | 93..880 | 165..952 | 3925 | 99.9 | Plus |
| CG10602-RD | 2172 | CG10602-RD | 139..926 | 165..952 | 3925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18856437..18856850 | 952..539 | 2055 | 99.8 | Minus |
| 2L | 23513712 | 2L | 18857177..18857403 | 391..165 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 18856916..18857064 | 540..392 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 164..39 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:00:28 has no hits.
BS08036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:35 Download gff for
BS08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:04 Download gff for
BS08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:33 Download gff for
BS08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..1024 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:42 Download gff for
BS08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..1024 | 17..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:42 Download gff for
BS08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18856437..18856848 | 541..952 | 99 | <- | Minus |
| 2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
| 2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| 2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| 2L | 18859137..18859160 | 17..40 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:33 Download gff for
BS08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18856437..18856848 | 541..952 | 99 | <- | Minus |
| arm_2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
| arm_2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| arm_2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| arm_2L | 18859137..18859160 | 17..40 | 95 | | Minus |
BS08036.complete Sequence
2087 bp assembled on 2008-08-14
GenBank Submission: FJ636069
> BS08036.complete
GAAGTTATCAGTCGACATGTCCATCGCGAAGCGTGTGCAGCAATGGGCAA
CGTTCGCGCGCACTTGGCACATTTACGATTGCACCTGGCAGAATCCATTC
GAGTCGGCAAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCAT
TTACCACCCAATGATCTCTACTCGCGGCTTGTGCACTTCACACAAACTAC
TCCCGATTTACCAAGTACAAAAACGCAACATGGGTCGCTTAGGAGTCGTG
GATCCCAGTTCTTACTCGCAGCCCGATTTGATCACCACTGAGCACAGTGC
TCTCAACTGGAAGATCGACTTTGCAGCAACCAAAATCCAAGGAAGCGTGC
TCCATCGCTTCAAGGTGTTGACTGCCAATCTGGACAAAATTCTCCTTGAT
GTCCGCGACATCAATGTAACCAATGCCACGCTGCTGGCCGGAGGCAGTGA
GCTCCCGATCAACTTCTTTATCAGCGATGCCGTCGATGATATTGGCCAGA
AGCTAACGCTGGAGTTGCCATCTGGAACGGCTAAGGGAAGCCTTAACGTT
CGCATCGATTACGAGACTTCAAGCAGCGCCAGTGGGTTGCAGTGGCTGAA
TCCCACCCAGACTTTGGGCAAGGAGCATCCTTATATGTTCTCCCAATGCC
AGGCAATCCACGCTCGCTCGGTGATTCCCTGCCAAGACACGCCAGCTGTT
AAGTTTACCTATGATGCCACAGTGGAGCATCCCAGCGAGCTCACGGCCCT
GATGAGCGCCCTTATCGATAAGAAGGAACCGGGAAAGACACTATTCAAGC
AGGAGGTGCCCATTCCCGCTTATCTGGTGGCCATTGCCATTGGCAAATTG
GTTTCCCGCCCGCTGGGGGAGAACTCCAGTGTCTGGGCTGAGGAAGCCAT
CGTGGATGCCTGCGCCGAGGAGTTTTCCGAAACAGCTACCATGCTAAAGA
CTGCCACTGAGTTGTGTGGTCCGTATGTCTGGAAGCAGTACGATCTTCTG
GTGATGCCCCCCTCATTCCCCTTTGGTGGCATGGAGAATCCATGCCTCAC
CTTCGTAACTCCCACTCTTTTGGCCGGTGATAAGTCTCTGGCCGACGTTG
TGGCTCACGAGATAGCCCACAGCTGGACTGGTAATCTTGTGACCAACAAG
AACTTCGAGCATTTCTGGTTGAACGAGGGCTTCACTGTGTTCGTGGAATC
CAAGATCGTGGGAAGAATGCAGGGCGCCAAGGAGTTGGACTTTAAAATGC
TCAGCAATCTCACGGATCTGCAGGAGTGCATCCGCACTCAGCTCAACAAG
ACACCCGAGCTGACTAAGCTGGTGGTGGATCTATCCAACTGTGGACCCGA
CGATGCCTTCTCTTCAGTGCCTTACATTAAGGGTTCGACGTTCCTGCGCT
ACTTGGAGGACTTGTTTGGCGGACCAACCGTTTTTGAGCCTTTCCTGAGA
GACTATCTGAAAAAATACGCCTACAAGTCGATTGAGACGAAAGATTTCCA
GAGTGCTTTATATGACTACTTCATCGACACGGACAAGAAGGATAAGCTGA
GTGCTGTCGACTGGGACTTGTGGCTGAAATCCGAGGGAATGCCACCCGTC
ATTCCGAACTTCGATGAATCCCTCGCTAATGTGACCAAGGAATTGGCCAG
TCTCTGGAGCTCTAAGAGCGTGGCTGAATTGGCTGACAGTGCGGAGATCA
AGACGACCATTTCCATTCACCAGCTCATTGACTTCCTGGGCAAACTGATC
GAGAGCAAGGACATTGTCGATTTGAACGAAGGCAAGATTAATCTACTGGA
ATCCACATACAACCTGAAGAGTTCGAAGAACGCCGAGGTTCGCTTCCGAT
TGAATCGCTTGATTATCCGTGCACGCTTGATAAAACGTCTGGATGAGATC
CTCGAATTTGCCAACTCCAACTTCCGCATGAAGTTCTGTCGCCCCATCTA
CCGCGATCTGGCTGGTTGGCCAGAGGCCAAGCCCGCTGCTATTCGCAACT
TCGTCAACGTCAAGGATCAGATGATGGCCGTCTGCTCGCATACAATTGAA
AAGGATCTGGGGCTGAAGTAAAAGCTTTCTAGACCAT
BS08036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 1842 | CG10602-PE | 1..1842 | 230..2071 | 9195 | 99.9 | Plus |
| CG10602-RC | 1842 | CG10602-PC | 1..1842 | 230..2071 | 9195 | 99.9 | Plus |
| CG10602-RD | 1842 | CG10602-PD | 1..1842 | 230..2071 | 9195 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 89..2144 | 17..2072 | 10250 | 99.9 | Plus |
| CG10602-RC | 2126 | CG10602-RC | 93..2000 | 165..2072 | 9525 | 99.9 | Plus |
| CG10602-RD | 2172 | CG10602-RD | 139..2046 | 165..2072 | 9525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18855252..18856077 | 2072..1247 | 4115 | 99.9 | Minus |
| 2L | 23513712 | 2L | 18856143..18856850 | 1246..539 | 3540 | 100 | Minus |
| 2L | 23513712 | 2L | 18857177..18857403 | 391..165 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 18856916..18857064 | 540..392 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 164..39 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:24:49 has no hits.
BS08036.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:20 Download gff for
BS08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RA | 53..2111 | 17..2076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:42 Download gff for
BS08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..2141 | 17..2069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:41 Download gff for
BS08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RA | 53..2105 | 17..2069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:01 Download gff for
BS08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..2141 | 17..2069 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:01 Download gff for
BS08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18855255..18856077 | 1247..2069 | 99 | <- | Minus |
| 2L | 18856143..18856848 | 541..1246 | 100 | <- | Minus |
| 2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
| 2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| 2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| 2L | 18859137..18859160 | 17..40 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:42 Download gff for
BS08036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18855255..18856077 | 1247..2069 | 99 | <- | Minus |
| arm_2L | 18856143..18856848 | 541..1246 | 100 | <- | Minus |
| arm_2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
| arm_2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| arm_2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| arm_2L | 18859137..18859160 | 17..40 | 95 | | Minus |
BS08036.pep Sequence
Translation from 16 to 2070
> BS08036.pep
MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMI
STRGLCTSHKLLPIYQVQKRNMGRLGVVDPSSYSQPDLITTEHSALNWKI
DFAATKIQGSVLHRFKVLTANLDKILLDVRDINVTNATLLAGGSELPINF
FISDAVDDIGQKLTLELPSGTAKGSLNVRIDYETSSSASGLQWLNPTQTL
GKEHPYMFSQCQAIHARSVIPCQDTPAVKFTYDATVEHPSELTALMSALI
DKKEPGKTLFKQEVPIPAYLVAIAIGKLVSRPLGENSSVWAEEAIVDACA
EEFSETATMLKTATELCGPYVWKQYDLLVMPPSFPFGGMENPCLTFVTPT
LLAGDKSLADVVAHEIAHSWTGNLVTNKNFEHFWLNEGFTVFVESKIVGR
MQGAKELDFKMLSNLTDLQECIRTQLNKTPELTKLVVDLSNCGPDDAFSS
VPYIKGSTFLRYLEDLFGGPTVFEPFLRDYLKKYAYKSIETKDFQSALYD
YFIDTDKKDKLSAVDWDLWLKSEGMPPVIPNFDESLANVTKELASLWSSK
SVAELADSAEIKTTISIHQLIDFLGKLIESKDIVDLNEGKINLLESTYNL
KSSKNAEVRFRLNRLIIRARLIKRLDEILEFANSNFRMKFCRPIYRDLAG
WPEAKPAAIRNFVNVKDQMMAVCSHTIEKDLGLK*
BS08036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-PE | 613 | CG10602-PE | 1..613 | 72..684 | 3171 | 100 | Plus |
| CG10602-PC | 613 | CG10602-PC | 1..613 | 72..684 | 3171 | 100 | Plus |
| CG10602-PD | 613 | CG10602-PD | 1..613 | 72..684 | 3171 | 100 | Plus |
| CG11951-PB | 493 | CG11951-PB | 57..465 | 106..498 | 300 | 26.3 | Plus |
| mRpL13-PA | 178 | CG10603-PA | 1..49 | 1..49 | 276 | 100 | Plus |
