Clone Sequence Records
BS08038.3prime Sequence
937 bp (846 high quality bases) assembled on 2006-01-06
> BS08038.3prime
ATGGTCTAGAAAGCTTCTAACGTATTTGCACATTGAAACTATCCACGCTC
GCACTAGCGATCTGCTTGTGGATTTCGTTGACCTCCGCCTGGGTTAAGGT
GCGCTCCATATGGCGATAAACAATGCGGAAGCACACGCTCGATTTCCCCG
TTTTCGGGTGCTTAAACTTGTCCACCAGACTGATCTGCTCCACCATATCA
CCAGCTACAGAGCGGACTAGATCGTAAAAGTCGTTCGGCGAGAAGCCGGC
ATCCACCTCAATGTCCTGGGGCAGCCAGAACGACAAGTCATTCGTGCACT
GCGGATAGTGGGAGATGGGCTTGTACTTGGGCAGATTGTGCAGATCCTTT
TCGCTAAACTGCGACAGAAAGCCACTGTCGTTCGACCAGAAGAGCCGGAT
GTCAGGTATATCGAACAGCACCATGGCCAGTCGCTCCAGGCCGACGCCAA
AGGCGTAGCCAATCGATTGATGAACGCCCGATCTCTGCAGGATTTCGTGG
CGCATGATGCCGCAGCCTAAGACCTCCAGCCAGTTGTCCTTGAAATAGAT
CTCCAGCTCCCAGGAGGGCTGGGTGAAGGGAAAATAGGTGTCCACCCATC
TGTACTTGATGCGCGGCCCAAACAGATCCTTGGTCAGGCCAACCAGCACG
TGCTTCATCTCGTGCTCCATCAACTTGACGGCCTCGAGCGTGTGGCAGGG
CTGTTTGGTTTGGTCCATGAACTTGGATGAGGGCAGAATCAGCTTGGGGT
CGGCCAGCGTACCCGACCACGTCTCTTCAAAGAGTTCCAGGCCAGGATTG
CGCTCGAAAAGCTTGTCTTTGGTGACCAGCCGCACAGCGTCCGCCTGGTG
GAATACCGGATAGTGGGTGCTATCGATTTCGTCCCGTCGATACACCTCGC
CCACGACCAAAAAGTGTCCAGCCCGCCCGAGATCAAT
BS08038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13348-PA | 1362 | Aats-phe-RA | 464..1362 | 915..17 | 4470 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-phe-RA | 1526 | CG13348-RA | 542..1463 | 937..17 | 4570 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13968849..13969602 | 937..185 | 3705 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13969669..13969839 | 187..17 | 855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:14:19 has no hits.
BS08038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:38 Download gff for
BS08038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13348-PA | 441..1362 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:08 Download gff for
BS08038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13348-PA | 441..1362 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:34:02 Download gff for
BS08038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 542..1463 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:37 Download gff for
BS08038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 542..1463 | 17..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:37 Download gff for
BS08038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13968849..13969602 | 185..937 | 99 | -> | Minus |
| 2R | 13969672..13969839 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:34:02 Download gff for
BS08038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9856354..9857107 | 185..937 | 99 | -> | Minus |
| arm_2R | 9857177..9857344 | 17..184 | 100 | | Minus |
BS08038.5prime Sequence
851 bp (830 high quality bases) assembled on 2006-01-06
> BS08038.5prime
GAAGTTATCAGTCGACATGCTTCTGACGCTTCGAGTGCAGGGAGCACGGC
ACTGGTTGAAGTCCACCCGCTGCCTGGCCAGCAGTGCGGCGCCCGCGAAG
TCGCCGTCATCGCCACCGCAGCTGGAGGTCAGTGGAAGCACGTACGCCAC
CGACGGATGGACGAACGTAACGCCCAAGATACTCTCCTACGTGGGGGCCA
ACAAGCACCTGCAGACGGACCACCCGCTTTCCATCATCCGCCAGAGGATC
GTAAACTACTTTTATGGAGCGTATCGCAACCAAAGGGGCAATCCACTATT
CTCCGTCTATGATCAAATGAATCCGGTGGTTACTGTGCAGCAGAACTTTG
ACAATCTGCTAATTCCCGCCGATCATGTGAGTCGACAGAAATCCGATTGC
TATTACATCAATCAGCAGCATCTGCTGCGCGCCCACACCACCGCCCATCA
GGTGGAATTGATCTCGGGCGGGCTGGACAACTTTCTGGTCGTGGGCGAGG
TGTATCGACGGGACGAAATCGATAGCACCCACTATCCGGTATTCCACCAG
GCGGACGCTGTGCGGCTGGTCACCAAAGACAAGCTTTTCGAGCGCAATCC
TGGCCTGGAACTCTTTGAAGAGACGTGGTCGGGTACGCTGGCCGACCCCA
AGCTGATTCTGCCCTCATCCAAGTTCATGGACCAAACCAAACAGCCCTGC
CACACGCTCGAGGCCGTCAAGTTGATGGAGCACGAGATGAAGCACGTGCT
GGTTGGCCTGACCAAGGATCTGTTTGGGCCGCGCATCAAGTACAGATGGG
TGGACACCTATTTTCCCTTCACCCAGCCCTCCTGGGAGCTGGAGATCTAT
T
BS08038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13348-PA | 1362 | Aats-phe-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-phe-RA | 1526 | CG13348-RA | 102..936 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13968409..13969243 | 17..851 | 4175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:06:37 has no hits.
BS08038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:39 Download gff for
BS08038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13348-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:10 Download gff for
BS08038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13348-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:52 Download gff for
BS08038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 102..936 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:40 Download gff for
BS08038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 102..936 | 17..851 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:40 Download gff for
BS08038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13968409..13969243 | 17..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:52 Download gff for
BS08038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9855914..9856748 | 17..851 | 100 | | Plus |
BS08038.complete Sequence
1394 bp (1394 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636070
> BS08038.complete
GAAGTTATCAGTCGACATGCTTCTGACGCTTCGAGTGCAGGGAGCACGGC
ACTGGTTGAAGTCCACCCGCTGCCTGGCCAGCAGTGCGGCGCCCGCGAAG
TCGCCGTCATCGCCACCGCAGCTGGAGGTCAGTGGAAGCACGTACGCCAC
CGACGGATGGACGAACGTAACGCCCAAGATACTCTCCTACGTGGGGGCCA
ACAAGCACCTGCAGACGGACCACCCGCTTTCCATCATCCGCCAGAGGATC
GTAAACTACTTTTATGGAGCGTATCGCAACCAAAGGGGCAATCCACTATT
CTCCGTCTATGATCAAATGAATCCGGTGGTTACTGTGCAGCAGAACTTTG
ACAATCTGCTAATTCCCGCCGATCATGTGAGTCGACAGAAATCCGATTGC
TATTACATCAATCAGCAGCATCTGCTGCGCGCCCACACCACCGCCCATCA
GGTGGAATTGATCTCGGGCGGGCTGGACAACTTTCTGGTCGTGGGCGAGG
TGTATCGACGGGACGAAATCGATAGCACCCACTATCCGGTATTCCACCAG
GCGGACGCTGTGCGGCTGGTCACCAAAGACAAGCTTTTCGAGCGCAATCC
TGGCCTGGAACTCTTTGAAGAGACGTGGTCGGGTACGCTGGCCGACCCCA
AGCTGATTCTGCCCTCATCCAAGTTCATGGACCAAACCAAACAGCCCTGC
CACACGCTCGAGGCCGTCAAGTTGATGGAGCACGAGATGAAGCACGTGCT
GGTTGGCCTGACCAAGGATCTGTTTGGGCCGCGCATCAAGTACAGATGGG
TGGACACCTATTTTCCCTTCACCCAGCCCTCCTGGGAGCTGGAGATCTAT
TTCAAGGACAACTGGCTGGAGGTCTTAGGCTGCGGCATCATGCGCCACGA
AATCCTGCAGAGATCGGGCGTTCATCAATCGATTGGCTACGCCTTTGGCG
TCGGCCTGGAGCGACTGGCCATGGTGCTGTTCGATATACCTGACATCCGG
CTCTTCTGGTCGAACGACAGTGGCTTTCTGTCGCAGTTTAGCGAAAAGGA
TCTGCACAATCTGCCCAAGTACAAGCCCATCTCCCACTATCCGCAGTGCA
CGAATGACTTGTCGTTCTGGCTGCCCCAGGACATTGAGGTGGATGCCGGC
TTCTCGCCGAACGACTTTTACGATCTAGTCCGCTCTGTAGCTGGTGATAT
GGTGGAGCAGATCAGTCTGGTGGACAAGTTTAAGCACCCGAAAACGGGGA
AATCGAGCGTGTGCTTCCGCATTGTTTATCGCCATATGGAGCGCACCTTA
ACCCAGGCGGAGGTCAACGAAATCCACAAGCAGATCGCTAGTGCGAGCGT
GGATAGTTTCAATGTGCAAATACGTTAGAAGCTTTCTAGACCAT
BS08038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-phe-RA | 1362 | CG13348-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-phe-RA | 1526 | CG13348-RA | 102..1463 | 17..1378 | 6810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13968409..13969602 | 17..1210 | 5970 | 100 | Plus |
| 2R | 25286936 | 2R | 13969669..13969839 | 1208..1378 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:42:31 has no hits.
BS08038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:46 Download gff for
BS08038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 1..1362 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:58 Download gff for
BS08038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 63..1424 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:24 Download gff for
BS08038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 102..1463 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:46 Download gff for
BS08038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 63..1424 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:02 Download gff for
BS08038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-phe-RA | 102..1463 | 17..1378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:02 Download gff for
BS08038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13968409..13969602 | 17..1210 | 100 | -> | Plus |
| 2R | 13969672..13969839 | 1211..1378 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:24 Download gff for
BS08038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9855914..9857107 | 17..1210 | 100 | -> | Plus |
| arm_2R | 9857177..9857344 | 1211..1378 | 100 | | Plus |
BS08038.pep Sequence
Translation from 16 to 1377
> BS08038.pep
MLLTLRVQGARHWLKSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTN
VTPKILSYVGANKHLQTDHPLSIIRQRIVNYFYGAYRNQRGNPLFSVYDQ
MNPVVTVQQNFDNLLIPADHVSRQKSDCYYINQQHLLRAHTTAHQVELIS
GGLDNFLVVGEVYRRDEIDSTHYPVFHQADAVRLVTKDKLFERNPGLELF
EETWSGTLADPKLILPSSKFMDQTKQPCHTLEAVKLMEHEMKHVLVGLTK
DLFGPRIKYRWVDTYFPFTQPSWELEIYFKDNWLEVLGCGIMRHEILQRS
GVHQSIGYAFGVGLERLAMVLFDIPDIRLFWSNDSGFLSQFSEKDLHNLP
KYKPISHYPQCTNDLSFWLPQDIEVDAGFSPNDFYDLVRSVAGDMVEQIS
LVDKFKHPKTGKSSVCFRIVYRHMERTLTQAEVNEIHKQIASASVDSFNV
QIR*
BS08038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-phe-PA | 453 | CG13348-PA | 1..453 | 1..453 | 2410 | 100 | Plus |
