Clone Sequence Records
BS08039.3prime Sequence
630 bp (629 high quality bases) assembled on 2006-01-06
> BS08039.3prime
ATGGTCTAGAAAGCTTCTAACTGAACAGGCCCTCGGTGGCCTTCTCCAAA
TTCCAATTCTCCTTGGAGAGCACGGCGCGCGCCTCATGCTCGTCGATGCC
CATGTCCCTGAGACGTTGGATCTTTGAATCACAATCGGGAAAGGTGTGCG
GTCCGCCCGCATACGCGTTGGTCCAGTGCTTGGCCGTAAGCAGGAACAGA
TCGTACTTGTCCTTAAACTGATAGGCCACCACTGCGTCCTGTGGATCGTC
CGGCTCTGCGGCGGCCAGGAGCGCCTGCAGCGACAGCAGTACGGTGCGCA
GTGTCATCGCTGCAGCCCAGTTGTCCTTTAAGATGTCCAAGCAAATCGCA
CCCGTAACCGACGATATATTCGGATGCCAGATGCGCGTTATGAAGCGTAC
CTTTGGTGGATTGAAGGGATATGTCTCGGGCACCTTGATCTCCAGGACGA
ACTTGCCGCCCTCGTAGGGCGTGTCAGGCGGACCGGCGATCTCGCCGCGC
AGCTCCGTCCAACTGTCATTGACCAGTTCGATTTTGATGGAACACTGGAC
GATCTCCTCGCTGCGCATCACCTCCTTGAACTCCCGCTTGATCCGCGACA
CTGCCATGTTCGCCATGTCGACTGATAACT
BS08039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8284-PA | 600 | UbcD4-RA | 1..600 | 616..17 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 1709 | CG8284-RC | 357..957 | 617..17 | 3005 | 100 | Minus |
Ubc4-RB | 1473 | CG8284-RB | 357..957 | 617..17 | 3005 | 100 | Minus |
Ubc4-RA | 1107 | CG8284-RA | 357..957 | 617..17 | 3005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9699344..9699729 | 402..17 | 1930 | 100 | Minus |
3L | 28110227 | 3L | 9698964..9699123 | 555..396 | 800 | 100 | Minus |
3L | 28110227 | 3L | 9698692..9698755 | 617..554 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:30:11 has no hits.
BS08039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:40 Download gff for
BS08039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:12 Download gff for
BS08039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8284-PA | 1..600 | 17..616 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:06 Download gff for
BS08039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 354..960 | 11..624 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:51 Download gff for
BS08039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc4-RA | 354..960 | 11..624 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:51 Download gff for
BS08039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9698689..9698755 | 554..624 | 94 | -> | Minus |
3L | 9698966..9699118 | 401..553 | 100 | -> | Minus |
3L | 9699346..9699732 | 11..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:06 Download gff for
BS08039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9691789..9691855 | 554..624 | 94 | -> | Minus |
arm_3L | 9692066..9692218 | 401..553 | 100 | -> | Minus |
arm_3L | 9692446..9692832 | 11..400 | 99 | | Minus |
BS08039.5prime Sequence
630 bp (629 high quality bases) assembled on 2006-01-06
> BS08039.5prime
GAAGTTATCAGTCGACATGGCGAACATGGCAGTGTCGCGGATCAAGCGGG
AGTTCAAGGAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAA
ATCGAACTGGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGG
TCCGCCTGACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGG
TGCCCGAGACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGC
ATCTGGCATCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACAT
CTTAAAGGACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGT
CGCTGCAGGCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCA
GTGGTGGCCTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGC
CAAGCACTGGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATT
GTGATTCAAAGATCCAACGTCTCAGGGACATGGGCATCGACGAGCATGAG
GCGCGCGCCGTGCTCTCCAAGGAGAATTGGAATTTGGAGAAGGCCACCGA
GGGCCTGTTCAGTTAGAAGCTTTCTAGACC
BS08039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8284-PA | 600 | UbcD4-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 1709 | CG8284-RC | 357..957 | 16..616 | 3005 | 100 | Plus |
Ubc4-RB | 1473 | CG8284-RB | 357..957 | 16..616 | 3005 | 100 | Plus |
Ubc4-RA | 1107 | CG8284-RA | 357..957 | 16..616 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9699344..9699729 | 231..616 | 1930 | 100 | Plus |
3L | 28110227 | 3L | 9698964..9699123 | 78..237 | 800 | 100 | Plus |
3L | 28110227 | 3L | 9698692..9698755 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:12:07 has no hits.
BS08039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:41 Download gff for
BS08039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:13 Download gff for
BS08039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8284-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:19 Download gff for
BS08039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 354..960 | 9..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:28 Download gff for
BS08039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc4-RA | 354..960 | 9..622 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:28 Download gff for
BS08039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9698966..9699118 | 80..232 | 100 | -> | Plus |
3L | 9698689..9698755 | 9..79 | 94 | -> | Plus |
3L | 9699346..9699732 | 233..622 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:19 Download gff for
BS08039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9691789..9691855 | 9..79 | 94 | -> | Plus |
arm_3L | 9692066..9692218 | 80..232 | 100 | -> | Plus |
arm_3L | 9692446..9692832 | 233..622 | 99 | | Plus |
BS08039.complete Sequence
632 bp (632 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636071
> BS08039.complete
GAAGTTATCAGTCGACATGGCGAACATGGCAGTGTCGCGGATCAAGCGGG
AGTTCAAGGAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAA
ATCGAACTGGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGG
TCCGCCTGACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGG
TGCCCGAGACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGC
ATCTGGCATCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACAT
CTTAAAGGACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGT
CGCTGCAGGCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCA
GTGGTGGCCTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGC
CAAGCACTGGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATT
GTGATTCAAAGATCCAACGTCTCAGGGACATGGGCATCGACGAGCATGAG
GCGCGCGCCGTGCTCTCCAAGGAGAATTGGAATTTGGAGAAGGCCACCGA
GGGCCTGTTCAGTTAGAAGCTTTCTAGACCAT
BS08039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 600 | CG8284-PC | 1..600 | 17..616 | 3000 | 100 | Plus |
Ubc4-RB | 600 | CG8284-PB | 1..600 | 17..616 | 3000 | 100 | Plus |
Ubc4-RA | 600 | CG8284-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-RC | 1709 | CG8284-RC | 357..957 | 16..616 | 3005 | 100 | Plus |
Ubc4-RB | 1473 | CG8284-RB | 357..957 | 16..616 | 3005 | 100 | Plus |
Ubc4-RA | 1107 | CG8284-RA | 357..957 | 16..616 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9699344..9699729 | 231..616 | 1930 | 100 | Plus |
3L | 28110227 | 3L | 9698964..9699123 | 78..237 | 800 | 100 | Plus |
3L | 28110227 | 3L | 9698692..9698755 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:58:52 has no hits.
BS08039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:38 Download gff for
BS08039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:48 Download gff for
BS08039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 348..954 | 9..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:59 Download gff for
BS08039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 358..957 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:38 Download gff for
BS08039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD4-RA | 348..954 | 9..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:16 Download gff for
BS08039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc4-RA | 358..957 | 17..616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:16 Download gff for
BS08039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9698693..9698755 | 17..79 | 100 | -> | Plus |
3L | 9698966..9699118 | 80..232 | 100 | -> | Plus |
3L | 9699346..9699729 | 233..616 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:59 Download gff for
BS08039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9691793..9691855 | 17..79 | 100 | -> | Plus |
arm_3L | 9692066..9692218 | 80..232 | 100 | -> | Plus |
arm_3L | 9692446..9692829 | 233..616 | 100 | | Plus |
BS08039.pep Sequence
Translation from 16 to 615
> BS08039.pep
MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTP
YEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNW
AAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTN
AYAGGPHTFPDCDSKIQRLRDMGIDEHEARAVLSKENWNLEKATEGLFS*
BS08039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc4-PC | 199 | CG8284-PC | 1..199 | 1..199 | 1049 | 100 | Plus |
Ubc4-PB | 199 | CG8284-PB | 1..199 | 1..199 | 1049 | 100 | Plus |
Ubc4-PA | 199 | CG8284-PA | 1..199 | 1..199 | 1049 | 100 | Plus |
eff-PC | 147 | CG7425-PC | 1..146 | 4..153 | 308 | 44.7 | Plus |
eff-PB | 147 | CG7425-PB | 1..146 | 4..153 | 308 | 44.7 | Plus |