Clone BS08039 Report

Search the DGRC for BS08039

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptUbc4-RA
Protein status:BS08039.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08039.3prime Sequence

630 bp (629 high quality bases) assembled on 2006-01-06

> BS08039.3prime
ATGGTCTAGAAAGCTTCTAACTGAACAGGCCCTCGGTGGCCTTCTCCAAA
TTCCAATTCTCCTTGGAGAGCACGGCGCGCGCCTCATGCTCGTCGATGCC
CATGTCCCTGAGACGTTGGATCTTTGAATCACAATCGGGAAAGGTGTGCG
GTCCGCCCGCATACGCGTTGGTCCAGTGCTTGGCCGTAAGCAGGAACAGA
TCGTACTTGTCCTTAAACTGATAGGCCACCACTGCGTCCTGTGGATCGTC
CGGCTCTGCGGCGGCCAGGAGCGCCTGCAGCGACAGCAGTACGGTGCGCA
GTGTCATCGCTGCAGCCCAGTTGTCCTTTAAGATGTCCAAGCAAATCGCA
CCCGTAACCGACGATATATTCGGATGCCAGATGCGCGTTATGAAGCGTAC
CTTTGGTGGATTGAAGGGATATGTCTCGGGCACCTTGATCTCCAGGACGA
ACTTGCCGCCCTCGTAGGGCGTGTCAGGCGGACCGGCGATCTCGCCGCGC
AGCTCCGTCCAACTGTCATTGACCAGTTCGATTTTGATGGAACACTGGAC
GATCTCCTCGCTGCGCATCACCTCCTTGAACTCCCGCTTGATCCGCGACA
CTGCCATGTTCGCCATGTCGACTGATAACT

BS08039.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8284-PA 600 UbcD4-RA 1..600 616..17 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc4-RC 1709 CG8284-RC 357..957 617..17 3005 100 Minus
Ubc4-RB 1473 CG8284-RB 357..957 617..17 3005 100 Minus
Ubc4-RA 1107 CG8284-RA 357..957 617..17 3005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9699344..9699729 402..17 1930 100 Minus
3L 28110227 3L 9698964..9699123 555..396 800 100 Minus
3L 28110227 3L 9698692..9698755 617..554 320 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:30:11 has no hits.

BS08039.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:40 Download gff for BS08039.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcD4-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:12 Download gff for BS08039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8284-PA 1..600 17..616 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:06 Download gff for BS08039.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcD4-RA 354..960 11..624 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:51 Download gff for BS08039.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc4-RA 354..960 11..624 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:51 Download gff for BS08039.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9698689..9698755 554..624 94 -> Minus
3L 9698966..9699118 401..553 100 -> Minus
3L 9699346..9699732 11..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:06 Download gff for BS08039.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9691789..9691855 554..624 94 -> Minus
arm_3L 9692066..9692218 401..553 100 -> Minus
arm_3L 9692446..9692832 11..400 99   Minus

BS08039.5prime Sequence

630 bp (629 high quality bases) assembled on 2006-01-06

> BS08039.5prime
GAAGTTATCAGTCGACATGGCGAACATGGCAGTGTCGCGGATCAAGCGGG
AGTTCAAGGAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAA
ATCGAACTGGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGG
TCCGCCTGACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGG
TGCCCGAGACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGC
ATCTGGCATCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACAT
CTTAAAGGACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGT
CGCTGCAGGCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCA
GTGGTGGCCTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGC
CAAGCACTGGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATT
GTGATTCAAAGATCCAACGTCTCAGGGACATGGGCATCGACGAGCATGAG
GCGCGCGCCGTGCTCTCCAAGGAGAATTGGAATTTGGAGAAGGCCACCGA
GGGCCTGTTCAGTTAGAAGCTTTCTAGACC

BS08039.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8284-PA 600 UbcD4-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc4-RC 1709 CG8284-RC 357..957 16..616 3005 100 Plus
Ubc4-RB 1473 CG8284-RB 357..957 16..616 3005 100 Plus
Ubc4-RA 1107 CG8284-RA 357..957 16..616 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9699344..9699729 231..616 1930 100 Plus
3L 28110227 3L 9698964..9699123 78..237 800 100 Plus
3L 28110227 3L 9698692..9698755 16..79 320 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:12:07 has no hits.

BS08039.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:41 Download gff for BS08039.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD4-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:13 Download gff for BS08039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8284-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:19 Download gff for BS08039.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD4-RA 354..960 9..622 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:28 Download gff for BS08039.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc4-RA 354..960 9..622 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:28 Download gff for BS08039.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9698966..9699118 80..232 100 -> Plus
3L 9698689..9698755 9..79 94 -> Plus
3L 9699346..9699732 233..622 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:19 Download gff for BS08039.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9691789..9691855 9..79 94 -> Plus
arm_3L 9692066..9692218 80..232 100 -> Plus
arm_3L 9692446..9692832 233..622 99   Plus

BS08039.complete Sequence

632 bp (632 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636071

> BS08039.complete
GAAGTTATCAGTCGACATGGCGAACATGGCAGTGTCGCGGATCAAGCGGG
AGTTCAAGGAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAA
ATCGAACTGGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGG
TCCGCCTGACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGG
TGCCCGAGACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGC
ATCTGGCATCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACAT
CTTAAAGGACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGT
CGCTGCAGGCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCA
GTGGTGGCCTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGC
CAAGCACTGGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATT
GTGATTCAAAGATCCAACGTCTCAGGGACATGGGCATCGACGAGCATGAG
GCGCGCGCCGTGCTCTCCAAGGAGAATTGGAATTTGGAGAAGGCCACCGA
GGGCCTGTTCAGTTAGAAGCTTTCTAGACCAT

BS08039.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc4-RC 600 CG8284-PC 1..600 17..616 3000 100 Plus
Ubc4-RB 600 CG8284-PB 1..600 17..616 3000 100 Plus
Ubc4-RA 600 CG8284-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc4-RC 1709 CG8284-RC 357..957 16..616 3005 100 Plus
Ubc4-RB 1473 CG8284-RB 357..957 16..616 3005 100 Plus
Ubc4-RA 1107 CG8284-RA 357..957 16..616 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9699344..9699729 231..616 1930 100 Plus
3L 28110227 3L 9698964..9699123 78..237 800 100 Plus
3L 28110227 3L 9698692..9698755 16..79 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:58:52 has no hits.

BS08039.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:38 Download gff for BS08039.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD4-RA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:48 Download gff for BS08039.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD4-RA 348..954 9..622 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:59 Download gff for BS08039.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD4-RA 358..957 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:38 Download gff for BS08039.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD4-RA 348..954 9..622 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:16 Download gff for BS08039.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc4-RA 358..957 17..616 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:16 Download gff for BS08039.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9698693..9698755 17..79 100 -> Plus
3L 9698966..9699118 80..232 100 -> Plus
3L 9699346..9699729 233..616 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:59 Download gff for BS08039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9691793..9691855 17..79 100 -> Plus
arm_3L 9692066..9692218 80..232 100 -> Plus
arm_3L 9692446..9692829 233..616 100   Plus

BS08039.pep Sequence

Translation from 16 to 615

> BS08039.pep
MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTP
YEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNW
AAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTN
AYAGGPHTFPDCDSKIQRLRDMGIDEHEARAVLSKENWNLEKATEGLFS*

BS08039.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc4-PC 199 CG8284-PC 1..199 1..199 1049 100 Plus
Ubc4-PB 199 CG8284-PB 1..199 1..199 1049 100 Plus
Ubc4-PA 199 CG8284-PA 1..199 1..199 1049 100 Plus
eff-PC 147 CG7425-PC 1..146 4..153 308 44.7 Plus
eff-PB 147 CG7425-PB 1..146 4..153 308 44.7 Plus