Clone Sequence Records
BS08040.3prime Sequence
951 bp (873 high quality bases) assembled on 2006-01-06
> BS08040.3prime
ATGGTCTAGAAAGCTTTTACTTATGGCCATTGGTAGGATCAACGCCTCCG
CAGGCACCTTCGCTGTCGGAAGTGCTTATGCTACCATTGCAACTTTTTGA
TATTCCATTTGTGGGTGTAATGGGAATTTTCAAGGAGCTCAGCGATTTTG
TTGCTCCGGCCAAGCCCACAACACTGTCCTCCTCATCCGAGGATGCGTCG
GATAGCTGGCGGGGCGACAGGCGGCAACCGCGCTGAATATATTGGTTCAA
TCGATCCACTGAGGCCAGGATCAGGCCGAGGAAAGGAGGCGACGGCTTCA
GAGGCCGCGACAAGTACTCTGGATGATATTGGGTGGCAACAAAGTAGGGA
TGACCGCTGAGCTCAATGATTTCCATCCTAGTTTTGTCGACGTCGGTGCC
CACAAATCGCATGCCTTGCTCTTCCAGCAGATGCACGTATTTGGGATTAA
CCTCGTAACGATGCCGATGACGCTCCTGCACGCTTTTCGGATTGCCATAC
AACTGGCGAATGACACTAGGACCATCAGAGAAAACAGTTATTCGCTTGCC
CAAGCGCATAGTGCCGCCCAATTGACCCGTGTGATGCTCTGGCATATCGA
TGACCAAGGCATTAGCTGTGTTCGGATCGATTTCTGTGGTGTTTGCATCC
TTGAGACCAAGTTTATTTCGTGCGAATTCAATGACCGCCGCTTGCAGACC
CAAGCAGATGCCAAGCAATGGCTTTTGATTCTCTCGCGCCCATTGGCATG
CACGAATCTTGCCCTCCATTCCACGGGAACCGAATCCACCGGGGACTAGG
ATGCCATGGCTATCGCATAGCTTCTGCCACTCCTTGTGGTACTTGCTCGG
CTCAGAATGCAAAGTTTCCTCCTCCAGCAGGCACGACTCGATAAAGACCA
GTTCCAGTTTGCGATTCACTGCCAGGGCGGCATGGTGCAGGGCTTTAACT
A
BS08040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PC | 1884 | CG6854-RC | 950..1884 | 951..17 | 4650 | 99.8 | Minus |
CG6854-PB | 1872 | CG6854-RB | 938..1872 | 951..17 | 4650 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RC | 2627 | CG45070-RC | 1387..2322 | 951..16 | 4665 | 99.9 | Minus |
CTPsyn-RB | 2423 | CG45070-RB | 1183..2118 | 951..16 | 4665 | 99.9 | Minus |
CTPsyn-RA | 2406 | CG45070-RA | 1166..2101 | 951..16 | 4665 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111763..15112698 | 951..16 | 4665 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:43:28 has no hits.
BS08040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:43 Download gff for
BS08040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PC | 951..1884 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:14 Download gff for
BS08040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PB | 939..1872 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:02 Download gff for
BS08040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RC | 1167..2103 | 12..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:19 Download gff for
BS08040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 1167..2103 | 12..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:19 Download gff for
BS08040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15111764..15112700 | 12..950 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:02 Download gff for
BS08040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15104864..15105800 | 12..950 | 99 | | Minus |
BS08040.5prime Sequence
985 bp (873 high quality bases) assembled on 2006-01-06
> BS08040.5prime
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCCGTCGCCGTGAAGT
TTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTCGTACGCCT
CCGTAGTTTAAGCCCCTGCACATGGCCGCCTTGGC
BS08040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PB | 1872 | CG6854-RB | 1..949 | 17..965 | 4670 | 99.6 | Plus |
CG6854-PC | 1884 | CG6854-RC | 167..961 | 171..965 | 3900 | 99.6 | Plus |
CG6854-PA | 1290 | CG6854-RA | 1..154 | 17..170 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RB | 2423 | CG45070-RB | 246..1213 | 17..985 | 4715 | 99.3 | Plus |
CTPsyn-RC | 2627 | CG45070-RC | 604..1417 | 171..985 | 3945 | 99.1 | Plus |
CTPsyn-RA | 2406 | CG45070-RA | 383..1196 | 171..985 | 3945 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111085..15111588 | 340..843 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 15110816..15110986 | 171..341 | 855 | 100 | Plus |
3L | 28110227 | 3L | 15108805..15108959 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 15111653..15111774 | 844..965 | 565 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:32:26 has no hits.
BS08040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:44 Download gff for
BS08040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PB | 1..968 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:16 Download gff for
BS08040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PB | 1..968 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:58 Download gff for
BS08040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 377..1344 | 17..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:14 Download gff for
BS08040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 246..1213 | 17..985 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:14 Download gff for
BS08040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15110816..15110986 | 171..341 | 100 | -> | Plus |
3L | 15111087..15111588 | 342..843 | 100 | -> | Plus |
3L | 15111653..15111793 | 844..985 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:58 Download gff for
BS08040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15103916..15104086 | 171..341 | 100 | -> | Plus |
arm_3L | 15104187..15104688 | 342..843 | 100 | -> | Plus |
arm_3L | 15104753..15104893 | 844..985 | 95 | | Plus |
BS08040.complete Sequence
1904 bp assembled on 2008-01-03
GenBank Submission: FJ636072
> BS08040.complete
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGTTCGCCGTGAAGT
TTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTCGTACGCCT
CCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTGAATCGCAAACTG
GAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGAAACTTTGCATTC
TGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTATGCGATAGCCATG
GCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATGGAGGGCAAGATT
CGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATTGCTTGGCATCTG
CTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAAATAAACTTGGTC
TCAAGGATGCAAACACCACAGAAATCGATCCGAACACAGCTAATGCCTTG
GTCATCGATATGCCAGAGCATCACACGGGTCAATTGGGCGGCACTATGCG
CTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTAGTGTCATTCGCC
AGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCATCGGCATCGTTAC
GAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCAAGGCATGCGATT
TGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCATTGAGCTCAGCG
GTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAGTACTTGTCGCGG
CCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCTGGCCTCAGTGGA
TCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGTCGCCCCGCCAGC
TATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTGGGCTTGGCCGGA
GCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTACACCCACAAATGG
AATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCGACAGCGAAGGTG
CCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGTAAAAGCTTTCTAGA
CCAT
BS08040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RB | 1872 | CG45070-PB | 1..1872 | 17..1888 | 9360 | 100 | Plus |
CTPsyn-RC | 1884 | CG45070-PC | 167..1884 | 171..1888 | 8590 | 100 | Plus |
CTPsyn-RA | 1884 | CG45070-PA | 167..1884 | 171..1888 | 8590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RB | 2423 | CG45070-RB | 246..2118 | 17..1889 | 9365 | 100 | Plus |
CTPsyn-RC | 2627 | CG45070-RC | 604..2322 | 171..1889 | 8595 | 100 | Plus |
CTPsyn-RA | 2406 | CG45070-RA | 383..2101 | 171..1889 | 8595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111653..15112698 | 844..1889 | 5230 | 100 | Plus |
3L | 28110227 | 3L | 15111085..15111588 | 340..843 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 15110816..15110986 | 171..341 | 855 | 100 | Plus |
3L | 28110227 | 3L | 15108805..15108959 | 17..171 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:06 has no hits.
BS08040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:48 Download gff for
BS08040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RB | 1..1872 | 17..1888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:38 Download gff for
BS08040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RB | 244..2113 | 17..1886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:06 Download gff for
BS08040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 377..2246 | 17..1886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:49 Download gff for
BS08040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RB | 244..2118 | 17..1893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:27 Download gff for
BS08040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 246..2115 | 17..1886 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:27 Download gff for
BS08040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15110816..15110986 | 171..341 | 100 | -> | Plus |
3L | 15111087..15111588 | 342..843 | 100 | -> | Plus |
3L | 15111653..15112695 | 844..1886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:06 Download gff for
BS08040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15103916..15104086 | 171..341 | 100 | -> | Plus |
arm_3L | 15104187..15104688 | 342..843 | 100 | -> | Plus |
arm_3L | 15104753..15105795 | 844..1886 | 100 | | Plus |
BS08040.pep Sequence
Translation from 16 to 1887
> BS08040.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PSEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEKERTG
EYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTIGDIE
GMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSVRELR
GCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIYHVPL
LMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVCIAVV
GKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSEPSKY
HKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICLGLQA
AVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRLGKRI
TVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFVGTDV
DKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDRLNQY
IQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGISKSC
NGSISTSDSEGACGGVDPTNGHK*
BS08040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-PB | 623 | CG45070-PB | 1..623 | 1..623 | 3275 | 100 | Plus |
CTPsyn-PC | 627 | CG45070-PC | 57..627 | 53..623 | 2991 | 100 | Plus |
CTPsyn-PA | 627 | CG45070-PA | 57..627 | 53..623 | 2991 | 100 | Plus |
CG45071-PB | 379 | CG45071-PB | 1..53 | 1..53 | 283 | 96.2 | Plus |
CG45071-PA | 429 | CG45071-PA | 1..54 | 1..54 | 281 | 96.3 | Plus |