Clone BS08040 Report

Search the DGRC for BS08040

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCTPsyn-RB
Protein status:BS08040.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08040.3prime Sequence

951 bp (873 high quality bases) assembled on 2006-01-06

> BS08040.3prime
ATGGTCTAGAAAGCTTTTACTTATGGCCATTGGTAGGATCAACGCCTCCG
CAGGCACCTTCGCTGTCGGAAGTGCTTATGCTACCATTGCAACTTTTTGA
TATTCCATTTGTGGGTGTAATGGGAATTTTCAAGGAGCTCAGCGATTTTG
TTGCTCCGGCCAAGCCCACAACACTGTCCTCCTCATCCGAGGATGCGTCG
GATAGCTGGCGGGGCGACAGGCGGCAACCGCGCTGAATATATTGGTTCAA
TCGATCCACTGAGGCCAGGATCAGGCCGAGGAAAGGAGGCGACGGCTTCA
GAGGCCGCGACAAGTACTCTGGATGATATTGGGTGGCAACAAAGTAGGGA
TGACCGCTGAGCTCAATGATTTCCATCCTAGTTTTGTCGACGTCGGTGCC
CACAAATCGCATGCCTTGCTCTTCCAGCAGATGCACGTATTTGGGATTAA
CCTCGTAACGATGCCGATGACGCTCCTGCACGCTTTTCGGATTGCCATAC
AACTGGCGAATGACACTAGGACCATCAGAGAAAACAGTTATTCGCTTGCC
CAAGCGCATAGTGCCGCCCAATTGACCCGTGTGATGCTCTGGCATATCGA
TGACCAAGGCATTAGCTGTGTTCGGATCGATTTCTGTGGTGTTTGCATCC
TTGAGACCAAGTTTATTTCGTGCGAATTCAATGACCGCCGCTTGCAGACC
CAAGCAGATGCCAAGCAATGGCTTTTGATTCTCTCGCGCCCATTGGCATG
CACGAATCTTGCCCTCCATTCCACGGGAACCGAATCCACCGGGGACTAGG
ATGCCATGGCTATCGCATAGCTTCTGCCACTCCTTGTGGTACTTGCTCGG
CTCAGAATGCAAAGTTTCCTCCTCCAGCAGGCACGACTCGATAAAGACCA
GTTCCAGTTTGCGATTCACTGCCAGGGCGGCATGGTGCAGGGCTTTAACT
A

BS08040.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-PC 1884 CG6854-RC 950..1884 951..17 4650 99.8 Minus
CG6854-PB 1872 CG6854-RB 938..1872 951..17 4650 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RC 2627 CG45070-RC 1387..2322 951..16 4665 99.9 Minus
CTPsyn-RB 2423 CG45070-RB 1183..2118 951..16 4665 99.9 Minus
CTPsyn-RA 2406 CG45070-RA 1166..2101 951..16 4665 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111763..15112698 951..16 4665 99.9 Minus
Blast to na_te.dros performed on 2015-01-31 15:43:28 has no hits.

BS08040.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:43 Download gff for BS08040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PC 951..1884 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:14 Download gff for BS08040.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PB 939..1872 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:02 Download gff for BS08040.3prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RC 1167..2103 12..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:19 Download gff for BS08040.3prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 1167..2103 12..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:19 Download gff for BS08040.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15111764..15112700 12..950 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:02 Download gff for BS08040.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15104864..15105800 12..950 99   Minus

BS08040.5prime Sequence

985 bp (873 high quality bases) assembled on 2006-01-06

> BS08040.5prime
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCCGTCGCCGTGAAGT
TTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTCGTACGCCT
CCGTAGTTTAAGCCCCTGCACATGGCCGCCTTGGC

BS08040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-PB 1872 CG6854-RB 1..949 17..965 4670 99.6 Plus
CG6854-PC 1884 CG6854-RC 167..961 171..965 3900 99.6 Plus
CG6854-PA 1290 CG6854-RA 1..154 17..170 770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RB 2423 CG45070-RB 246..1213 17..985 4715 99.3 Plus
CTPsyn-RC 2627 CG45070-RC 604..1417 171..985 3945 99.1 Plus
CTPsyn-RA 2406 CG45070-RA 383..1196 171..985 3945 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111085..15111588 340..843 2520 100 Plus
3L 28110227 3L 15110816..15110986 171..341 855 100 Plus
3L 28110227 3L 15108805..15108959 17..171 775 100 Plus
3L 28110227 3L 15111653..15111774 844..965 565 97.5 Plus
Blast to na_te.dros performed on 2015-02-04 01:32:26 has no hits.

BS08040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:44 Download gff for BS08040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PB 1..968 17..985 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:16 Download gff for BS08040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PB 1..968 17..985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:58 Download gff for BS08040.5prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 377..1344 17..985 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:14 Download gff for BS08040.5prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 246..1213 17..985 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:14 Download gff for BS08040.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15108805..15108958 17..170 100 -> Plus
3L 15110816..15110986 171..341 100 -> Plus
3L 15111087..15111588 342..843 100 -> Plus
3L 15111653..15111793 844..985 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:58 Download gff for BS08040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15101905..15102058 17..170 100 -> Plus
arm_3L 15103916..15104086 171..341 100 -> Plus
arm_3L 15104187..15104688 342..843 100 -> Plus
arm_3L 15104753..15104893 844..985 95   Plus

BS08040.complete Sequence

1904 bp assembled on 2008-01-03

GenBank Submission: FJ636072

> BS08040.complete
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGTTCGCCGTGAAGT
TTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTCGTACGCCT
CCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTGAATCGCAAACTG
GAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGAAACTTTGCATTC
TGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTATGCGATAGCCATG
GCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATGGAGGGCAAGATT
CGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATTGCTTGGCATCTG
CTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAAATAAACTTGGTC
TCAAGGATGCAAACACCACAGAAATCGATCCGAACACAGCTAATGCCTTG
GTCATCGATATGCCAGAGCATCACACGGGTCAATTGGGCGGCACTATGCG
CTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTAGTGTCATTCGCC
AGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCATCGGCATCGTTAC
GAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCAAGGCATGCGATT
TGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCATTGAGCTCAGCG
GTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAGTACTTGTCGCGG
CCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCTGGCCTCAGTGGA
TCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGTCGCCCCGCCAGC
TATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTGGGCTTGGCCGGA
GCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTACACCCACAAATGG
AATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCGACAGCGAAGGTG
CCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGTAAAAGCTTTCTAGA
CCAT

BS08040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RB 1872 CG45070-PB 1..1872 17..1888 9360 100 Plus
CTPsyn-RC 1884 CG45070-PC 167..1884 171..1888 8590 100 Plus
CTPsyn-RA 1884 CG45070-PA 167..1884 171..1888 8590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RB 2423 CG45070-RB 246..2118 17..1889 9365 100 Plus
CTPsyn-RC 2627 CG45070-RC 604..2322 171..1889 8595 100 Plus
CTPsyn-RA 2406 CG45070-RA 383..2101 171..1889 8595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111653..15112698 844..1889 5230 100 Plus
3L 28110227 3L 15111085..15111588 340..843 2520 100 Plus
3L 28110227 3L 15110816..15110986 171..341 855 100 Plus
3L 28110227 3L 15108805..15108959 17..171 775 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:34:06 has no hits.

BS08040.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:48 Download gff for BS08040.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 1..1872 17..1888 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:38 Download gff for BS08040.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 244..2113 17..1886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:06 Download gff for BS08040.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 377..2246 17..1886 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:49 Download gff for BS08040.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 244..2118 17..1893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:27 Download gff for BS08040.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 246..2115 17..1886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:27 Download gff for BS08040.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15108805..15108958 17..170 100 -> Plus
3L 15110816..15110986 171..341 100 -> Plus
3L 15111087..15111588 342..843 100 -> Plus
3L 15111653..15112695 844..1886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:06 Download gff for BS08040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15101905..15102058 17..170 100 -> Plus
arm_3L 15103916..15104086 171..341 100 -> Plus
arm_3L 15104187..15104688 342..843 100 -> Plus
arm_3L 15104753..15105795 844..1886 100   Plus

BS08040.pep Sequence

Translation from 16 to 1887

> BS08040.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PSEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEKERTG
EYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTIGDIE
GMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSVRELR
GCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIYHVPL
LMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVCIAVV
GKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSEPSKY
HKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICLGLQA
AVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRLGKRI
TVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFVGTDV
DKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDRLNQY
IQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGISKSC
NGSISTSDSEGACGGVDPTNGHK*

BS08040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-PB 623 CG45070-PB 1..623 1..623 3275 100 Plus
CTPsyn-PC 627 CG45070-PC 57..627 53..623 2991 100 Plus
CTPsyn-PA 627 CG45070-PA 57..627 53..623 2991 100 Plus
CG45071-PB 379 CG45071-PB 1..53 1..53 283 96.2 Plus
CG45071-PA 429 CG45071-PA 1..54 1..54 281 96.3 Plus