Clone Sequence Records
BS08041.3prime Sequence
920 bp (839 high quality bases) assembled on 2006-01-06
> BS08041.3prime
ATGGTCTAGAAAGCTTTTACGATGAAGAAACAATTATAGTAACTTCCTTA
ATGGCCTTCTGGGTAGGGTCTTCATTCTGATTGCTCGGTGATGGGGTTCT
GTCTTTAATGTTTTCTTGTTCCAGATCAGTTTTTAATCGTTTAGAGTTGT
TTTTTTCAAGAATTTCGTCGTCAGCATCAGCATTTTGTGATGCGCATCGC
TTAGACGCACTTTGATCATTTAAACTATGTGAAACATTTTCAGATGTCTT
AAGTAACTTATCTTCAGTTTGATTTGGAGGAATGGTGGACTGCAGCTCTT
GCAGCTTTTTCTTAAACTGGACGATTACGGCAGTCATGTTGTCGCATCCA
GTCCCATCACCCATTGTATTCGGAGCTAAACAGTTATCAAAAAGCTCTTC
ACAAATCGTTGACAATTTTTTGTTATCTTTTAGTCTGCAACGTACAAATT
CTACAACTTCCTCACTAGACATATAATTCCATATACCATCACAGGCCAGT
ACCATAAACTCGTCCTCTGGCGTGATAATTAGCTTCTTTATGTCAGGTAG
GGCAGATATCATTTGTTCCTCAGCTGGTAGGGTTACGTTCGTTTTATAGG
CATGGTCTCCAAGGGCTCGAGACAAATTAAGGCCTCCATTTACGCGTCCA
TCAAGTGTAACCCGACCACCTGCCTTTATTATGCGCGAGGCTTCTTCGTC
ATCTTCGGGCTTGTGGTCGATGCTCATTTCAATGGCTTGTCCACTGCGTG
ATATAACACATCGCGAGTCCCCTGCGTTTGCCACGTAAAGGTCCCGACCT
TGCAACAAACATACAACTGCAGTACATCCACTATCTTTTCCAGNTTCCTC
AATCATATTTGCACAAAAATTATCATTAGNCATCTGATCTTCATCAGTCT
CTTCTTCATCACTATCCTCA
BS08041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-PA | 1989 | CG10417-RA | 1086..1989 | 920..17 | 4482 | 99.7 | Minus |
| CG10417-PB | 1989 | CG10417-RB | 1086..1989 | 920..17 | 4482 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-RB | 2361 | CG10417-RB | 1201..2104 | 920..17 | 4498 | 99.8 | Minus |
| CG10417-RA | 2538 | CG10417-RA | 1378..2281 | 920..17 | 4498 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5361019..5361544 | 395..920 | 2608 | 99.6 | Plus |
| 2R | 25286936 | 2R | 5360588..5360967 | 17..396 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:53:44 has no hits.
BS08041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:45 Download gff for
BS08041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-PB | 1087..1989 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:17 Download gff for
BS08041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-PB | 1087..1989 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:13 Download gff for
BS08041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 1379..2284 | 10..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:18 Download gff for
BS08041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 1379..2284 | 10..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:18 Download gff for
BS08041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5360585..5360965 | 10..394 | 98 | <- | Plus |
| 2R | 5361019..5361543 | 395..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:13 Download gff for
BS08041.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1248090..1248470 | 10..394 | 98 | <- | Plus |
| arm_2R | 1248524..1249048 | 395..919 | 99 | | Plus |
BS08041.5prime Sequence
794 bp (793 high quality bases) assembled on 2006-01-06
> BS08041.5prime
GAAGTTATCAGTCGACATGGGTGCCTATTTGTCCCATCCGAAAACGGATA
AAACATCCACAGATCAGTTTAATGAATTGCTAGCCGTTGGAGCTAGCTCT
ATGCAAGGATGGCGGAACAGCCAAGAGGATGCACATAATTCTATTTTAAA
TTTTGACAACAACACATCGTTTTTTGCTGTGTATGATGGTCACGGCGGAG
CTGAGGTAGCGCAATATTGTGCTGACAAGTTACCACATTTTCTTAAAAAC
CTTGAAACCTACAAAAATGGACAATTTGAAGTGGCACTCAAGGAAGCATT
TTTGGGATTTGACAAAACGCTGCTTGATCCATCGATAGTCAGCATACTAA
AAATATTGGCTGGGGAACACAACTTCGTGGATGCCGAAGCGGACGATTAC
GAAGAAGAAGATTTAGCTGAATTGCAAGAGGAAAGCAATTTACCACTAAA
TGAAGTTCTGGAAAAATACAAAGGTCTTCCGCAAAAAAAAGACTTGGATC
TTAAGAGTTCTGACCATAAAGAAAATTTCAAAATGCGCTCTCCATATTTT
CGCGGGCGCCGAGCTGCAGCATTAGCTGCTGAAGCTACTAATAAAGCTGT
AATGGACCCCTCTGCAAAGCCAGATGGTTCTTCCACCTCCGCAGCAGCGG
CTGCAGCAGCGCTATCCGCCGATGGTGTAGCTAATTCCCGTAATCCGAGC
AATGTTGTAAATCCTATGGCTGGGGCTGATAGCAATACCACTACCAGTAT
CAACGATTTATCCACCAAGAATGCTGCATTAAAAGATGATTCTG
BS08041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-PA | 1989 | CG10417-RA | 1..778 | 17..794 | 3890 | 100 | Plus |
| CG10417-PB | 1989 | CG10417-RB | 1..778 | 17..794 | 3890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-RB | 2361 | CG10417-RB | 116..893 | 17..794 | 3890 | 100 | Plus |
| CG10417-RA | 2538 | CG10417-RA | 293..1070 | 17..794 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5361901..5362569 | 794..126 | 3345 | 100 | Minus |
| 2R | 25286936 | 2R | 5362627..5362738 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:59:15 has no hits.
BS08041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:46 Download gff for
BS08041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-PB | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:19 Download gff for
BS08041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-PB | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:02:17 Download gff for
BS08041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..1070 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:18 Download gff for
BS08041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..1070 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:18 Download gff for
BS08041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5361901..5362567 | 128..794 | 100 | <- | Minus |
| 2R | 5362628..5362738 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:02:17 Download gff for
BS08041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1249406..1250072 | 128..794 | 100 | <- | Minus |
| arm_2R | 1250133..1250243 | 17..127 | 100 | | Minus |
BS08041.complete Sequence
2021 bp assembled on 2008-01-03
GenBank Submission: FJ636073
> BS08041.complete
GAAGTTATCAGTCGACATGGGTGCCTATTTGTCCCATCCGAAAACGGATA
AAACATCCACAGATCAGTTTAATGAATTGCTAGCCGTTGGAGCTAGCTCT
ATGCAAGGATGGCGGAACAGCCAAGAGGATGCACATAATTCTATTTTAAA
TTTTGACAACAACACATCGTTTTTTGCTGTGTATGATGGTCACGGCGGAG
CTGAGGTAGCGCAATATTGTGCTGACAAGTTACCACATTTTCTTAAAAAC
CTTGAAACCTACAAAAATGGACAATTTGAAGTGGCACTCAAGGAAGCATT
TTTGGGATTTGACAAAACGCTGCTTGATCCATCGATAGTCAGCATACTAA
AAATATTGGCTGGGGAACACAACTTCGTGGATGCCGAAGCGGACGATTAC
GAAGAAGAAGATTTAGCTGAATTGCAAGAGGAAAGCAATTTACCACTAAA
TGAAGTTCTGGAAAAATACAAAGGTCTTCCGCAAAAAAAAGACTTGGATC
TTAAGAGTTCTGACCATAAAGAAAATTTCAAAATGCGCTCTCCATATTTT
CGCGGGCGCCGAGCTGCAGCATTAGCTGCTGAAGCTACTAATAAAGCTGT
AATGGACCCCTCTGCAAAGCCAGATGGTTCTTCCACCTCCGCAGCAGCGG
CTGCAGCAGCGCTATCCGCCGATGGTGTAGCTAATTCCCGTAATCCGAGC
AATGTTGTAAATCCTATGGCTGGGGCTGATAGCAATACCACTACCAGTAT
CAACGATTTATCCACCAAGAATGCTGCATTAAAAGATGATTCTGTTAATG
ACCAAAATGAGGGCTCAAATGGAACCGATTTCAAGCATACGTTGGTTTCT
TCTAGTAATAAAAAATTATTCGCTACTGGTTCTAACGACATGACCGAATT
AAATCAGTCCTCGAAAAACGAGTTCACAAACTCATCTACAAGCAAAGAGT
TTGAAAGGAATATAAACAGCTCCCAAGACGATGAGTTCACAGACGATGAT
GCGGACTATGAAGAAAATGATAATGTCAAGAGTCCTGATACTTCATCCGC
AGAAAGCTCTGACTGCACTGAAAATGATGACGACGGTGACGAAGATGGTA
ATGAGGATAGTGATGAAGAAGAGACTGATGAAGATCAGATGGCTAATGAT
AATTTTTGTGCAAATATGATTGAGGAACCTGGAAAAGATAGTGGATGTAC
TGCAGTTGTATGTTTGTTGCAAGGTCGGGACCTTTACGTGGCAAACGCAG
GGGACTCGCGATGTGTTATATCACGCAGTGGACAAGCCATTGAAATGAGC
ATCGACCACAAGCCCGAAGATGACGAAGAAGCCTCGCGCATAATAAAGGC
AGGTGGTCGGGTTACACTTGATGGACGCGTAAATGGAGGCCTTAATTTGT
CTCGAGCCCTTGGAGACCATGCCTATAAAACGAACGTAACCCTACCAGCT
GAGGAACAAATGATATCTGCCCTACCTGACATAAAGAAGCTAATTATCAC
GCCAGAGGACGAGTTTATGGTACTGGCCTGTGATGGTATATGGAATTATA
TGTCTAGTGAGGAAGTTGTAGAATTTGTACGTTGCAGACTAAAAGATAAC
AAAAAATTGTCAACGATTTGTGAAGAGCTTTTTGATAACTGTTTAGCTCC
GAATACAATGGGTGATGGGACTGGATGCGACAACATGACTGCCGTAATCG
TCCAGTTTAAGAAAAAGCTGCAAGAGCTGCAGTCCACCATTCCTCCAAAT
CAAACTGAAGATAAGTTACTTAAGACATCTGAAAATGTTTCACATAGTTT
AAATGATCAAAGTGCGTCTAAGCGATGCGCATCACAAAATGCTGATGCTG
ACGACGAAATTCTTGAAAAAAACAACTCTAAACGATTAAAAACTGATCTG
GAACAAGAAAACATTAAAGACAGAACCCCATCACCGAGCAATCAGAATGA
AGACCCTACCCAGAAGGCCATTAAGGAAGTTACTATAATTGTTTCTTCAT
CGTAAAAGCTTTCTAGACCAT
BS08041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-RB | 1989 | CG10417-PB | 1..1989 | 17..2005 | 9945 | 100 | Plus |
| CG10417-RA | 1989 | CG10417-PA | 1..1989 | 17..2005 | 9945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-RB | 2361 | CG10417-RB | 116..2104 | 17..2005 | 9945 | 100 | Plus |
| CG10417-RA | 2538 | CG10417-RA | 293..2281 | 17..2005 | 9945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5361598..5362569 | 1097..126 | 4860 | 100 | Minus |
| 2R | 25286936 | 2R | 5361019..5361549 | 1627..1097 | 2655 | 100 | Minus |
| 2R | 25286936 | 2R | 5360588..5360967 | 2005..1626 | 1900 | 100 | Minus |
| 2R | 25286936 | 2R | 5362627..5362738 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:29:16 has no hits.
BS08041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:50 Download gff for
BS08041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RB | 1..1989 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:34 Download gff for
BS08041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RB | 112..2098 | 17..2003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:53 Download gff for
BS08041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..2279 | 17..2003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:50 Download gff for
BS08041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RB | 112..2103 | 17..2012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:03 Download gff for
BS08041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..2279 | 17..2003 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:03 Download gff for
BS08041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5360590..5360965 | 1628..2003 | 100 | <- | Minus |
| 2R | 5361019..5361549 | 1097..1627 | 100 | <- | Minus |
| 2R | 5361599..5362567 | 128..1096 | 100 | <- | Minus |
| 2R | 5362628..5362738 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:53 Download gff for
BS08041.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1248095..1248470 | 1628..2003 | 100 | <- | Minus |
| arm_2R | 1248524..1249054 | 1097..1627 | 100 | <- | Minus |
| arm_2R | 1249104..1250072 | 128..1096 | 100 | <- | Minus |
| arm_2R | 1250133..1250243 | 17..127 | 100 | | Minus |
BS08041.pep Sequence
Translation from 16 to 2004
> BS08041.pep
MGAYLSHPKTDKTSTDQFNELLAVGASSMQGWRNSQEDAHNSILNFDNNT
SFFAVYDGHGGAEVAQYCADKLPHFLKNLETYKNGQFEVALKEAFLGFDK
TLLDPSIVSILKILAGEHNFVDAEADDYEEEDLAELQEESNLPLNEVLEK
YKGLPQKKDLDLKSSDHKENFKMRSPYFRGRRAAALAAEATNKAVMDPSA
KPDGSSTSAAAAAAALSADGVANSRNPSNVVNPMAGADSNTTTSINDLST
KNAALKDDSVNDQNEGSNGTDFKHTLVSSSNKKLFATGSNDMTELNQSSK
NEFTNSSTSKEFERNINSSQDDEFTDDDADYEENDNVKSPDTSSAESSDC
TENDDDGDEDGNEDSDEEETDEDQMANDNFCANMIEEPGKDSGCTAVVCL
LQGRDLYVANAGDSRCVISRSGQAIEMSIDHKPEDDEEASRIIKAGGRVT
LDGRVNGGLNLSRALGDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEF
MVLACDGIWNYMSSEEVVEFVRCRLKDNKKLSTICEELFDNCLAPNTMGD
GTGCDNMTAVIVQFKKKLQELQSTIPPNQTEDKLLKTSENVSHSLNDQSA
SKRCASQNADADDEILEKNNSKRLKTDLEQENIKDRTPSPSNQNEDPTQK
AIKEVTIIVSSS*
BS08041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-PB | 662 | CG10417-PB | 1..662 | 1..662 | 3413 | 100 | Plus |
| CG10417-PA | 662 | CG10417-PA | 1..662 | 1..662 | 3413 | 100 | Plus |
| Ppm1-PA | 352 | CG12169-PA | 115..284 | 392..562 | 427 | 49.7 | Plus |
| CG17746-PB | 371 | CG17746-PB | 114..353 | 392..653 | 398 | 38.2 | Plus |
| CG17746-PA | 371 | CG17746-PA | 114..353 | 392..653 | 398 | 38.2 | Plus |
| Ppm1-PA | 352 | CG12169-PA | 1..105 | 1..103 | 235 | 48.6 | Plus |
| CG17746-PB | 371 | CG17746-PB | 1..104 | 1..103 | 201 | 45.7 | Plus |
