Clone BS08044 Report

Search the DGRC for BS08044

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptVti1-RA
Protein status:BS08044.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08044.3prime Sequence

723 bp (722 high quality bases) assembled on 2006-01-06

> BS08044.3prime
ATGGTCTAGAAAGCTTCTACGACGAGGCGGTGCTGCTTGAACTGGGTGCG
AAGGTCAGATAGAGACTGACGCCCACGGCCACCACAAAGCAGACACCCAC
TCCATACAAGACCACCTTCTCCCGCAGGGCTCTTAACATCATGGTATTCA
GAGTGCGAGAAGCTCTTCCCAGCTCGGCATTGGTTTCTCGAAGTCGAGCC
CTGGCTCCCTGTAGAGTTTCCCTTTGGTGGTGCAGATCATTTAGGACCTG
GGCGCCCAGTTGCTCCGTCTCCAAGGCCACTCTGTACCCTTCGGTTAACC
TGTTGCCCGTCCGTTCAATCCTTTCCGAGTTGTCCAAGAGGCGTTGGCGT
TGATCTGTACTTATGGACACATCCTCATAGCTGTCACCCAAGTCCAGAGT
GGTGAATGTGTTGGCTTGGGAGCGCTGTTTGTCCTTGGTCAACCTGTACT
CCGCCTGCAGCCGTTTCAGTTCTGCCTGGGCCACCTGCAGCTTTCCGTTG
AAGCTGCTCCGCAGTCCAGGATTTAGCTCCCTCACCTCCAGACCCATCTG
CTCCAGCAATTCCTGAGCCTCGGGCAAACTGGAGTCGATCTTGCTGCACA
AATCATGGCGCTCGCTGTTGTTGTTTTGCTGCTGCAGCCGTCCAATATGG
GCCGTTATTTCTGCTATTAACGTGGCGTATTGCTGTTCGTATTGCTCCAG
AAGCGACATGTCGACTGATAACT

BS08044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3279-PA 693 CG3279-RA 1..693 709..17 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 1370 CG3279-RA 142..834 709..17 3465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 692022..692620 17..615 2995 100 Plus
3L 28110227 3L 692670..692778 601..709 485 96.3 Plus
Blast to na_te.dros performed on 2015-02-10 18:50:04 has no hits.

BS08044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:51 Download gff for BS08044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 17..709 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:26 Download gff for BS08044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 17..709 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:04:00 Download gff for BS08044.3prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..843 6..717 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:34 Download gff for BS08044.3prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..843 6..717 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:34 Download gff for BS08044.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 692013..692620 6..615 99 <- Plus
3L 692685..692783 616..717 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:04:00 Download gff for BS08044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 692013..692620 6..615 99 <- Plus
arm_3L 692685..692783 616..717 96   Plus

BS08044.5prime Sequence

723 bp (722 high quality bases) assembled on 2006-01-06

> BS08044.5prime
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGTAGAAGCTTTCTAGACC

BS08044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3279-PA 693 CG3279-RA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 1370 CG3279-RA 142..834 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 692022..692620 709..111 2995 100 Minus
3L 28110227 3L 692670..692778 125..17 485 96.3 Minus
Blast to na_te.dros performed on 2015-02-13 14:14:50 has no hits.

BS08044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:52 Download gff for BS08044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 17..709 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:28 Download gff for BS08044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3279-PA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:32 Download gff for BS08044.5prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..843 9..720 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:39 Download gff for BS08044.5prime
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 137..843 9..720 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:39 Download gff for BS08044.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 692013..692620 111..720 99 <- Minus
3L 692685..692783 9..110 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:32 Download gff for BS08044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 692013..692620 111..720 99 <- Minus
arm_3L 692685..692783 9..110 96   Minus

BS08044.complete Sequence

725 bp (725 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636074

> BS08044.complete
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGTAGAAGCTTTCTAGACCAT

BS08044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 693 CG3279-PA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-RA 1370 CG3279-RA 142..834 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 692022..692620 709..111 2995 100 Minus
3L 28110227 3L 692670..692778 125..17 485 96.3 Minus
Blast to na_te.dros performed on 2014-11-27 13:36:49 has no hits.

BS08044.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:30 Download gff for BS08044.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 1..693 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:28 Download gff for BS08044.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 133..839 9..720 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:07 Download gff for BS08044.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 142..834 17..709 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:30 Download gff for BS08044.complete
Subject Subject Range Query Range Percent Splice Strand
CG3279-RA 133..839 9..720 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:30 Download gff for BS08044.complete
Subject Subject Range Query Range Percent Splice Strand
Vti1-RA 142..834 17..709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:30 Download gff for BS08044.complete
Subject Subject Range Query Range Percent Splice Strand
3L 692022..692620 111..709 100 <- Minus
3L 692685..692778 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:07 Download gff for BS08044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 692022..692620 111..709 100 <- Minus
arm_3L 692685..692778 17..110 100   Minus

BS08044.pep Sequence

Translation from 16 to 708

> BS08044.pep
MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE
LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN
TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ
LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV
LYGVGVCFVVAVGVSLYLTFAPSSSSTASS*

BS08044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
Vti1-PA 230 CG3279-PA 1..230 1..230 1137 100 Plus