Clone Sequence Records
BS08044.3prime Sequence
723 bp (722 high quality bases) assembled on 2006-01-06
> BS08044.3prime
ATGGTCTAGAAAGCTTCTACGACGAGGCGGTGCTGCTTGAACTGGGTGCG
AAGGTCAGATAGAGACTGACGCCCACGGCCACCACAAAGCAGACACCCAC
TCCATACAAGACCACCTTCTCCCGCAGGGCTCTTAACATCATGGTATTCA
GAGTGCGAGAAGCTCTTCCCAGCTCGGCATTGGTTTCTCGAAGTCGAGCC
CTGGCTCCCTGTAGAGTTTCCCTTTGGTGGTGCAGATCATTTAGGACCTG
GGCGCCCAGTTGCTCCGTCTCCAAGGCCACTCTGTACCCTTCGGTTAACC
TGTTGCCCGTCCGTTCAATCCTTTCCGAGTTGTCCAAGAGGCGTTGGCGT
TGATCTGTACTTATGGACACATCCTCATAGCTGTCACCCAAGTCCAGAGT
GGTGAATGTGTTGGCTTGGGAGCGCTGTTTGTCCTTGGTCAACCTGTACT
CCGCCTGCAGCCGTTTCAGTTCTGCCTGGGCCACCTGCAGCTTTCCGTTG
AAGCTGCTCCGCAGTCCAGGATTTAGCTCCCTCACCTCCAGACCCATCTG
CTCCAGCAATTCCTGAGCCTCGGGCAAACTGGAGTCGATCTTGCTGCACA
AATCATGGCGCTCGCTGTTGTTGTTTTGCTGCTGCAGCCGTCCAATATGG
GCCGTTATTTCTGCTATTAACGTGGCGTATTGCTGTTCGTATTGCTCCAG
AAGCGACATGTCGACTGATAACT
BS08044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3279-PA | 693 | CG3279-RA | 1..693 | 709..17 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 1370 | CG3279-RA | 142..834 | 709..17 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 692022..692620 | 17..615 | 2995 | 100 | Plus |
3L | 28110227 | 3L | 692670..692778 | 601..709 | 485 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:50:04 has no hits.
BS08044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:51 Download gff for
BS08044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:26 Download gff for
BS08044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:04:00 Download gff for
BS08044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..843 | 6..717 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:34 Download gff for
BS08044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..843 | 6..717 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:34 Download gff for
BS08044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 692013..692620 | 6..615 | 99 | <- | Plus |
3L | 692685..692783 | 616..717 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:04:00 Download gff for
BS08044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 692013..692620 | 6..615 | 99 | <- | Plus |
arm_3L | 692685..692783 | 616..717 | 96 | | Plus |
BS08044.5prime Sequence
723 bp (722 high quality bases) assembled on 2006-01-06
> BS08044.5prime
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGTAGAAGCTTTCTAGACC
BS08044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3279-PA | 693 | CG3279-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 1370 | CG3279-RA | 142..834 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 692022..692620 | 709..111 | 2995 | 100 | Minus |
3L | 28110227 | 3L | 692670..692778 | 125..17 | 485 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:14:50 has no hits.
BS08044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:52 Download gff for
BS08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:28 Download gff for
BS08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:03:32 Download gff for
BS08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..843 | 9..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:39 Download gff for
BS08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 137..843 | 9..720 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:39 Download gff for
BS08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 692013..692620 | 111..720 | 99 | <- | Minus |
3L | 692685..692783 | 9..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:03:32 Download gff for
BS08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 692013..692620 | 111..720 | 99 | <- | Minus |
arm_3L | 692685..692783 | 9..110 | 96 | | Minus |
BS08044.complete Sequence
725 bp (725 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636074
> BS08044.complete
GAAGTTATCAGTCGACATGTCGCTTCTGGAGCAATACGAACAGCAATACG
CCACGTTAATAGCAGAAATAACGGCCCATATTGGACGGCTGCAGCAGCAA
AACAACAACAGCGAGCGCCATGATTTGTGCAGCAAGATCGACTCCAGTTT
GCCCGAGGCTCAGGAATTGCTGGAGCAGATGGGTCTGGAGGTGAGGGAGC
TAAATCCTGGACTGCGGAGCAGCTTCAACGGAAAGCTGCAGGTGGCCCAG
GCAGAACTGAAACGGCTGCAGGCGGAGTACAGGTTGACCAAGGACAAACA
GCGCTCCCAAGCCAACACATTCACCACTCTGGACTTGGGTGACAGCTATG
AGGATGTGTCCATAAGTACAGATCAACGCCAACGCCTCTTGGACAACTCG
GAAAGGATTGAACGGACGGGCAACAGGTTAACCGAAGGGTACAGAGTGGC
CTTGGAGACGGAGCAACTGGGCGCCCAGGTCCTAAATGATCTGCACCACC
AAAGGGAAACTCTACAGGGAGCCAGGGCTCGACTTCGAGAAACCAATGCC
GAGCTGGGAAGAGCTTCTCGCACTCTGAATACCATGATGTTAAGAGCCCT
GCGGGAGAAGGTGGTCTTGTATGGAGTGGGTGTCTGCTTTGTGGTGGCCG
TGGGCGTCAGTCTCTATCTGACCTTCGCACCCAGTTCAAGCAGCACCGCC
TCGTCGTAGAAGCTTTCTAGACCAT
BS08044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 693 | CG3279-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-RA | 1370 | CG3279-RA | 142..834 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 692022..692620 | 709..111 | 2995 | 100 | Minus |
3L | 28110227 | 3L | 692670..692778 | 125..17 | 485 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:49 has no hits.
BS08044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:30 Download gff for
BS08044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-RA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:28 Download gff for
BS08044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-RA | 133..839 | 9..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:07 Download gff for
BS08044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 142..834 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:30 Download gff for
BS08044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3279-RA | 133..839 | 9..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:30 Download gff for
BS08044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vti1-RA | 142..834 | 17..709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:30 Download gff for
BS08044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 692022..692620 | 111..709 | 100 | <- | Minus |
3L | 692685..692778 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:07 Download gff for
BS08044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 692022..692620 | 111..709 | 100 | <- | Minus |
arm_3L | 692685..692778 | 17..110 | 100 | | Minus |
BS08044.pep Sequence
Translation from 16 to 708
> BS08044.pep
MSLLEQYEQQYATLIAEITAHIGRLQQQNNNSERHDLCSKIDSSLPEAQE
LLEQMGLEVRELNPGLRSSFNGKLQVAQAELKRLQAEYRLTKDKQRSQAN
TFTTLDLGDSYEDVSISTDQRQRLLDNSERIERTGNRLTEGYRVALETEQ
LGAQVLNDLHHQRETLQGARARLRETNAELGRASRTLNTMMLRALREKVV
LYGVGVCFVVAVGVSLYLTFAPSSSSTASS*
BS08044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vti1-PA | 230 | CG3279-PA | 1..230 | 1..230 | 1137 | 100 | Plus |