Clone Sequence Records
BS08045.3prime Sequence
915 bp (847 high quality bases) assembled on 2006-01-06
> BS08045.3prime
ATGGTCTAGAAAGCTTCTACAGGAGCCAATCGTCTGATGCATCGGATGTC
AGTCTACTAACCACGACTGCCTGGCTTTTCTGGACACCAATAACATTGCA
ATCCGTACTTTGAAATGTATCTTCCGTTGGGACACGAGGTATGAGGACTG
CATCAGGTGCGATAGTTTCGTTTTTAATGTCTATTTCAACATATGGAATT
TCGGATTCCATCGCATTGAGTTGTGCAACTATTTCAGAATTCGGTGACGT
GTCCGGTGCCAGAGGCTCGTTTTTAACTGGTATCTTGGAATCAGTTTGAA
AACACTCTTCCGGAGTGTCGGATATAATAGTTACATGATTCGTTGGCACC
ACGGACTCCCGGTCATCGTCTTTCTTATCTTCACTCCCTTTGGAAGCATT
CTCATCCACGGGGCTCAAGAACATTTCAGTATCTGCACTGAATTTTGCAA
AAGCTCGCTTCGGCGTAGCTAGGAAAGTGGATATCGAAGGCTGAAACCCA
GTACGCAGCATAGATGCCCGACCTTCGTACTTGTACCACCGTATGGGCAC
CTCTCCAGTGACATAGAGATCGCGGCCCACGGGAACGGTGCTTATGACTC
GCTTTGGCTTGAGGAAGCGAACAAAGCGCTCCAACTCCTTGTAGCTGGAG
TGTTCTGAGTACTCAATGCCGATCGTGCTAATTCGCTTGCCGTACGAAGG
CTTTGAGTTCTTTTCCCAACCGCTGGGCCTTATGCCCAGCAACATGTCAT
ATTGGTCCTCGAATTCAGTAAAGTAATCGACTAGGCTCGGATAGCTGATT
TTTCCCATTGCAATGACGTGCAAGTTTGCTCCGCTGCGATCTTCTGTTAG
CAACGAGTCTAGATCCGGCCAATTCAGGCATCTTACTGCAGTGCTGCGAT
TGCTTTCCGTCCAAC
BS08045.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10018-PA | 2292 | Snm1-RA | 1395..2292 | 914..17 | 4440 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snm1-RA | 2589 | CG10018-RA | 1446..2343 | 914..17 | 4460 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5556769..5557540 | 788..17 | 3860 | 100 | Minus |
| 3R | 32079331 | 3R | 5556586..5556712 | 914..788 | 605 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:45:52 has no hits.
BS08045.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:53 Download gff for
BS08045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-PA | 1393..2292 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:29 Download gff for
BS08045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10018-PA | 1393..2292 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:14 Download gff for
BS08045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 1444..2348 | 11..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:31 Download gff for
BS08045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 1444..2348 | 11..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:31 Download gff for
BS08045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5556584..5556712 | 788..915 | 97 | -> | Minus |
| 3R | 5556770..5557545 | 11..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:14 Download gff for
BS08045.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1382306..1382434 | 788..915 | 97 | -> | Minus |
| arm_3R | 1382492..1383267 | 11..787 | 99 | | Minus |
BS08045.5prime Sequence
977 bp (765 high quality bases) assembled on 2006-01-06
> BS08045.5prime
GAAGTTATCAGTCGACATGTCCAATGTAGGGAAAATAAAGATAAGATCCA
TTGCGGATCTGCAGGCCACAGTACGAGTAAATGTAGAACCGGACCCAACG
CCCACGATCGAGAACAGAACGCCGGACAAGAAAAGAGCGGGAAGAACTCG
TGCGGCTTCCACGACAAAAAAGGTCCGACCAAAGACGGAAGCATGTCCAA
TCATAGCCAGCACTGCGTTCAAGCGTTCCAGCAAGAAGACTCCGCTGCCA
GGACAAATGCGCATCGATAGCTTTTTTACAAGTGCCGTCAAGAACTACAA
AGTCAAGTCAAGTTCCTCTTGCAGGAAGGTGGATCCTCCGTTGGACAAGC
GAAAGGTATCTACCAAAGGGCGCAAGCGCCTCTTCGAGGAGTCTACAACA
ACCTCATCTGCCTTTACGGGCAAGCTGGATGCAAAGCCGTCAGAGAAGCG
AGTGCAGCCTAGTCGCCGTGCGAAAGGCAAGGAGAACGCTAGCCTCTCCG
AAGTGCACGTAATTGACCTGTGCTCCGAGGACGAGCAGACCATAAAAAGA
AAGCCATCCGCGATAGCCTCTCCCTGTGAAAAAAGCAGCGATGTCCAAGC
AACCAAGTTTAGAACTCCAGAGACTTCCATGCCAGAAGCCAAGCTAAGCA
ATTCCAGCCTAGACCTAGTGGAAATCTCCCCCGGTCCCAACAAATCCCCA
ACGAATAACTTTTACCGGTCATCGCCGGCTGCAATCACAAAGGAAAGCCC
CCTGGGCAAAAACTCTAAAAAAGGAACTGTACGCAAACAAAGAAAACCAA
AGCCTTGTCCGCCCTATAAAGTAGTGGAGGGTACATCCTTCTGCGTCGAC
GGCTTTCAGTTTGGGGAAATAGAGGGAGTCACACATTACTTTCTCACGCA
CTTTCATGCGGATCACTACATCGGCCTGACTAAAAAAGTCTGCCATCCCC
TCTACGTGAGTCCTATTTCAGCGCGCT
BS08045.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10018-PA | 2292 | Snm1-RA | 1..961 | 17..977 | 4755 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snm1-RA | 2589 | CG10018-RA | 52..1012 | 17..977 | 4775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5555135..5556095 | 17..977 | 4775 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:05:27 has no hits.
BS08045.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:54 Download gff for
BS08045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-PA | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:30 Download gff for
BS08045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10018-PA | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:03:22 Download gff for
BS08045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 48..1012 | 9..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:53 Download gff for
BS08045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 48..1012 | 9..977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:53 Download gff for
BS08045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5555131..5556095 | 9..977 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:03:22 Download gff for
BS08045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1380853..1381817 | 9..977 | 99 | | Plus |
BS08045.complete Sequence
2324 bp assembled on 2008-01-03
GenBank Submission: FJ636075
> BS08045.complete
GAAGTTATCAGTCGACATGTCCAATGTAGGGAAAATAAAGATAAGATCCA
TTGCGGATCTGCAGGCCACAGTACGAGTAAATGTAGAACCGGACCCAACG
CCCACGATCGAGAACAGAACGCCGGACAAGAAAAGAGCGGGAAGAACTCG
TGCGGCTTCCACGACAAAAAAGGTCCGACCAAAGACGGAAGCATGTCCAA
TCATAGCCAGCACTGCGTTCAAGCGTTCCAGCAAGAAGACTCCGCTGCCA
GGACAAATGCGCATCGATAGCTTTTTTACAAGTGCCGTCAAGAACTACAA
AGTCAAGTCAAGTTCCTCTTGCAGGAAGGTGGATCCTCCGTTGGACAAGC
GAAAGGTATCTACCAAAGGGCGCAAGCGCCTCTTCGAGGAGTCTACAACA
ACCTCATCTGCCTTTACGGGCAAGCTGGATGCAAAGCCGTCAGAGAAGCG
AGTGCAGCCTAGTCGCCGTGCGAAAGGCAAGGAGAACGCTAGCCTCTCCG
AAGTGCACGTAATTGACCTGTGCTCCGAGGACGAGCAGACCATAAAAAGA
AAGCCATCCGCGATAGCCTCTCCCTGTGAAAAAAGCAGCGATGTCCAAGC
AACCAAGTTTAGAACTCCAGAGACTTCCATGCCAGAAGCCAAGCTAAGCA
ATTCCAGCCTAGACCTAGTGGAAATCTCCCCCGGTCCCAACAAATCCCCA
ACGAATAACTTTTACCGGTCATCGCCGGCTGCAATCACAAAGGAAAGCCC
CCTGGGCAAAAACTCTAAAAAAGGAACTGTACGCAAACAAAGAAAACCAA
AGCCTTGTCCGCCCTATAAAGTAGTGGAGGGTACATCCTTCTGCGTCGAC
GGCTTTCAGTTTGGGGAAATAGAGGGAGTCACACATTACTTTCTCACGCA
CTTTCATGCGGATCACTACATCGGCCTGACTAAAAAGTTCTGCCATCCCC
TCTACGTGAGTCCTATTTCAGCGCGCTTGGTGCGAACGTTTATTAAACTC
GATGAAACGCACATTCACGAAATTGATGTGGACCAGACCCTGGACGTAGA
TGGCGTCCAAGTAACCGCCTTAGAAGCTAACCACTGTCCTGGAGCACTCA
TGTTCTTCTTCAAACTGAGCTCTGGCGAATGCATACTGCACACCGGGGAC
TTCCGAGCTAGCGCGGACATGGAATCCCTACCAATCTTCTGGAACCATTC
AAACATCGACCTGCTTTATCTGGACACAACGTATATGAACAAAAACTACG
ACTTCTGCCACCAAAGCGAGAGCGTTGACCGAGCGGTGGATCTGGTGCGC
GCCTTCCTAGAGAAAAATGCAGCCAAACGAATCCTTATCGTCTGCGGCTC
CTACGTGATAGGAAAGGAGAAGATATGGTTGGCCTTAGCGAAGGAGTTCA
CAATGAGGGTTTGGACGGAAAGCAATCGCAGCACTGCAGTAAGATGCCTG
AATTGGCCGGATCTAGACTCCGTGCTAACAGAAGATCGCAGCGGAGCAAA
CTTGCACGTCATTGCAATGGGAAAAATCAGCTATCCGAGCCTAGTCGATT
ACTTTACTGAATTCGAGGACCAATATGACATGTTGCTGGGCATAAGGCCC
AGCGGTTGGGAAAAGAACTCAAAGCCTTCGTACGGCAAGCGAATTAGCAC
GATCGGCATTGAGTACTCAGAACACTCCAGCTACAAGGAGTTGGAGCGCT
TTGTTCGCTTCCTCAAGCCAAAGCGAGTCATAAGCACCGTTCCCGTGGGC
CGCGATCTCTATGTCACTGGAGAGGTGCCCATACGGTGGTACAAGTACGA
AGGTCGGGCATCTATGCTGCGTACTGGGTTTCAGCCTTCGATATCCACTT
TCCTAGCTACGCCGAAGCGAGCTTTTGCAAAATTCAGTGCAGATACTGAA
ATGTTCTTGAGCCCCGTGGATGAGAATGCTTCCAAAGGGAGTGAAGATAA
GAAAGACGATGACCGGGAGTCCGTGGTGCCAACGAATCATGTAACTATTA
TATCCGACACTCCGGAAGAGTGTTTTCAAACTGATTCCAAGATACCAGTT
AAAAACGAGCCTCTGGCACCGGACACGTCACCGAATTCTGAAATAGTTGC
ACAACTCAATGCGATGGAATCCGAAATTCCATATGTTGAAATAGACATTA
AAAACGAAACTATCGCACCTGATGCAGTCCTCATACCTCGTGTCCCAACG
GAAGATACATTTCAAAGTACGGATTGCAATGTTATTGGTGTCCAGAAAAG
CCAGGCAGTCGTGGTTAGTAGACTGACATCCGATGCATCAGACGATTGGC
TCCTGTAGAAGCTTTCTAGACCAT
BS08045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snm1-RA | 2292 | CG10018-PA | 1..2292 | 17..2308 | 11460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snm1-RA | 2589 | CG10018-RA | 52..2343 | 17..2308 | 11460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5555135..5556201 | 17..1083 | 5335 | 100 | Plus |
| 3R | 32079331 | 3R | 5556769..5557540 | 1537..2308 | 3860 | 100 | Plus |
| 3R | 32079331 | 3R | 5556259..5556712 | 1084..1537 | 2270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:53:25 has no hits.
BS08045.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:51 Download gff for
BS08045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 1..2292 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:58 Download gff for
BS08045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 46..2337 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:31 Download gff for
BS08045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 52..2343 | 17..2308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:51 Download gff for
BS08045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 42..2342 | 9..2314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:45 Download gff for
BS08045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snm1-RA | 52..2343 | 17..2308 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:45 Download gff for
BS08045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5555135..5556201 | 17..1083 | 100 | -> | Plus |
| 3R | 5556259..5556712 | 1084..1537 | 100 | -> | Plus |
| 3R | 5556770..5557540 | 1538..2308 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:31 Download gff for
BS08045.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1380857..1381923 | 17..1083 | 100 | -> | Plus |
| arm_3R | 1381981..1382434 | 1084..1537 | 100 | -> | Plus |
| arm_3R | 1382492..1383262 | 1538..2308 | 100 | | Plus |
BS08045.pep Sequence
Translation from 16 to 2307
> BS08045.pep
MSNVGKIKIRSIADLQATVRVNVEPDPTPTIENRTPDKKRAGRTRAASTT
KKVRPKTEACPIIASTAFKRSSKKTPLPGQMRIDSFFTSAVKNYKVKSSS
SCRKVDPPLDKRKVSTKGRKRLFEESTTTSSAFTGKLDAKPSEKRVQPSR
RAKGKENASLSEVHVIDLCSEDEQTIKRKPSAIASPCEKSSDVQATKFRT
PETSMPEAKLSNSSLDLVEISPGPNKSPTNNFYRSSPAAITKESPLGKNS
KKGTVRKQRKPKPCPPYKVVEGTSFCVDGFQFGEIEGVTHYFLTHFHADH
YIGLTKKFCHPLYVSPISARLVRTFIKLDETHIHEIDVDQTLDVDGVQVT
ALEANHCPGALMFFFKLSSGECILHTGDFRASADMESLPIFWNHSNIDLL
YLDTTYMNKNYDFCHQSESVDRAVDLVRAFLEKNAAKRILIVCGSYVIGK
EKIWLALAKEFTMRVWTESNRSTAVRCLNWPDLDSVLTEDRSGANLHVIA
MGKISYPSLVDYFTEFEDQYDMLLGIRPSGWEKNSKPSYGKRISTIGIEY
SEHSSYKELERFVRFLKPKRVISTVPVGRDLYVTGEVPIRWYKYEGRASM
LRTGFQPSISTFLATPKRAFAKFSADTEMFLSPVDENASKGSEDKKDDDR
ESVVPTNHVTIISDTPEECFQTDSKIPVKNEPLAPDTSPNSEIVAQLNAM
ESEIPYVEIDIKNETIAPDAVLIPRVPTEDTFQSTDCNVIGVQKSQAVVV
SRLTSDASDDWLL*
BS08045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snm1-PA | 763 | CG10018-PA | 1..763 | 1..763 | 3962 | 100 | Plus |
