Clone Sequence Records
BS08048.3prime Sequence
934 bp (861 high quality bases) assembled on 2006-01-06
> BS08048.3prime
ATGGTCTAGAAAGCTTTCACTGGGCCAACCGGTGCAGGAGCATGAAGACA
GCGGTGACTCCGAGGCCCAGACTGACCATAGAAGCGCCGGCATTCTTGCG
ATCCGCTATGCTGCCGTGCGGAATCTCGTTCTCGGAGTCATCCGGCTGCG
GCTCCGGCACAGCCAGCTCGTCCACGGCCAGCATGGTGGCCTCGTTGATG
GTCCGCAGAAGGGGATAGTTCTGGCTCGATCTCTTGGGCGCGGCAGTCAC
CTTCTGGAAGTCCTCGTACGTGTCCTCGTCCAGCTTGCAGTTACCCAGGA
AGTCGTCCGTGTCCACGGACCACACCATCACACCCGCAAGCCGCTTGGAC
ATGGCGAACAACACCTTGTTGGCGATGGAGCGGGAGCTGTCGTAGGTCAC
CACGTTGATCTCCTGGGTGAAGACGTTTCGCTCGGACTTGGCCAGCACCT
GGCTGGTTTGCGGATCCCACTCCCTTGTCCATCCGGAGGTCTGGTTGCTC
AGTGTCTGGCAGATCTCGTTGTAGCCCAGGAAGCCGTCCTCCCGCGTGTA
GGGTCCCTTGAAGCCTACGCCTTCGCTGACGTCGTTCAGGAATCCACTGG
CCAACGTCTTGAAGGTGCGTCCGTAGAAGGGCAGGCCCATCACCAGCTTC
TCCGGCGGGGCGCCCAGTTTCAGCAGGTAGTCAATGGAGAATTTCACACT
CAGCGGATCATCCGCGGGCGCCGTGAGCGGAGCATTGTAACCAACTCGGC
GGTCCCAGCTGCCGTGGTAGTCGTAGCACATGATGTGCAGGTAGTCCAAG
TAACGCGAGATCTGCCGCACGTCATAGGCCTCGTCGATCACCTTCTTGGA
GGCTCCGATGGCGGAGGTCAGCAGCAGGCCGTGCTCGTCGAACTCCTCGC
GCAGCTCCTTGGTCAGCAAAACGAAGTTCTCGCG
BS08048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2054-PA | 1455 | Cht2-RA | 538..1455 | 934..17 | 4565 | 99.8 | Minus |
CG3986-PA | 1389 | Cht4-RA | 846..889 | 551..508 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 2690 | CG2054-RB | 1468..2385 | 934..17 | 4575 | 99.9 | Minus |
Cht2-RC | 1911 | CG2054-RC | 904..1821 | 934..17 | 4575 | 99.9 | Minus |
Cht2-RA | 1645 | CG2054-RA | 638..1555 | 934..17 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1752633..1753311 | 17..695 | 3395 | 100 | Plus |
3L | 28110227 | 3L | 1753438..1753677 | 695..934 | 1185 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:24:20 has no hits.
BS08048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:57 Download gff for
BS08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-PA | 538..1455 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:33 Download gff for
BS08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2054-PA | 538..1455 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:22 Download gff for
BS08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 638..1561 | 11..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:57 Download gff for
BS08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 638..1561 | 11..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:57 Download gff for
BS08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1752627..1753310 | 11..694 | 99 | <- | Plus |
3L | 1753438..1753677 | 695..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:22 Download gff for
BS08048.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1752627..1753310 | 11..694 | 99 | <- | Plus |
arm_3L | 1753438..1753677 | 695..934 | 99 | | Plus |
BS08048.5prime Sequence
914 bp (815 high quality bases) assembled on 2006-01-06
> BS08048.5prime
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATCAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCG
BS08048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2054-PA | 1455 | Cht2-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 2690 | CG2054-RB | 931..1828 | 17..914 | 4490 | 100 | Plus |
Cht2-RC | 1911 | CG2054-RC | 367..1264 | 17..914 | 4490 | 100 | Plus |
Cht2-RA | 1645 | CG2054-RA | 101..998 | 17..914 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1753438..1753944 | 793..287 | 2535 | 100 | Minus |
3L | 28110227 | 3L | 1754001..1754168 | 287..120 | 840 | 100 | Minus |
3L | 28110227 | 3L | 1753190..1753311 | 914..793 | 610 | 100 | Minus |
3L | 28110227 | 3L | 1754236..1754342 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:51:26 has no hits.
BS08048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:58 Download gff for
BS08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:34 Download gff for
BS08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2054-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:15 Download gff for
BS08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 95..998 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:28 Download gff for
BS08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 95..998 | 9..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:28 Download gff for
BS08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1754237..1754348 | 9..122 | 96 | | Minus |
3L | 1753190..1753310 | 794..914 | 100 | <- | Minus |
3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
3L | 1754001..1754165 | 123..287 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:15 Download gff for
BS08048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1753190..1753310 | 794..914 | 100 | <- | Minus |
arm_3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
arm_3L | 1754001..1754165 | 123..287 | 100 | <- | Minus |
arm_3L | 1754237..1754348 | 9..122 | 96 | | Minus |
BS08048.complete Sequence
1487 bp (1487 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636076
> BS08048.complete
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATCAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCGAAGGCGTAGGCTTCAAGGGACCCTACACGCGGGAGG
ACGGCTTCCTGGGCTACAACGAGATCTGCCAGACACTGAGCAACCAGACC
TCCGGATGGACAAGGGAGTGGGATCCGCAAACCAGCCAGGTGCTGGCCAA
GTCCGAGCGAAACGTCTTCACCCAGGAGATCAACGTGGTGACCTACGACA
GCTCCCGCTCCATCGCCAACAAGGTGTTGTTCGCCATGTCCAAGCGGCTT
GCGGGTGTGATGGTGTGGTCCGTGGACACGGACGACTTCCTGGGTAACTG
CAAGCTGGACGAGGACACGTACGAGGACTTCCAGAAGGTGACTGCCGCGC
CCAAGAGATCGAGCCAGAACTATCCCCTTCTGCGGACCATCAACGAGGCC
ACCATGCTGGCCGTGGACGAGCTGGCTGTGCCGGAGCCGCAGCCGGATGA
CTCCGAGAACGAGATTCCGCACGGCAGCATAGCGGATCGCAAGAATGCCG
GCGCTTCTATGGTCAGTCTGGGCCTCGGAGTCACCGCTGTCTTCATGCTC
CTGCACCGGTTGGCCCAGTGAAAGCTTTCTAGACCAT
BS08048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 1455 | CG2054-PB | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Cht2-RC | 1455 | CG2054-PC | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Cht2-RA | 1455 | CG2054-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 2690 | CG2054-RB | 931..2385 | 17..1471 | 7275 | 100 | Plus |
Cht2-RC | 1911 | CG2054-RC | 367..1821 | 17..1471 | 7275 | 100 | Plus |
Cht2-RA | 1645 | CG2054-RA | 101..1555 | 17..1471 | 7275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1752633..1753311 | 1471..793 | 3395 | 100 | Minus |
3L | 28110227 | 3L | 1753438..1753944 | 793..287 | 2535 | 100 | Minus |
3L | 28110227 | 3L | 1754001..1754168 | 287..120 | 840 | 100 | Minus |
3L | 28110227 | 3L | 1754236..1754342 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:21:16 has no hits.
BS08048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:31 Download gff for
BS08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 1..1455 | 17..1471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:42 Download gff for
BS08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 90..1556 | 9..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:11 Download gff for
BS08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 101..1554 | 17..1470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:31 Download gff for
BS08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 90..1556 | 9..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:29 Download gff for
BS08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 101..1554 | 17..1470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:29 Download gff for
BS08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1752634..1753310 | 794..1470 | 100 | <- | Minus |
3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
3L | 1754001..1754165 | 123..287 | 100 | <- | Minus |
3L | 1754237..1754342 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:11 Download gff for
BS08048.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1752634..1753310 | 794..1470 | 100 | <- | Minus |
arm_3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
arm_3L | 1754001..1754165 | 123..287 | 100 | <- | Minus |
arm_3L | 1754237..1754342 | 17..122 | 100 | | Minus |
BS08048.pep Sequence
Translation from 16 to 1470
> BS08048.pep
MTLRSRLSGEAPQLWLLLLLASTASSLWASVAARTGPLHDKVVVCYVSTW
AVYRPEQGAYAIENFDPNLCTHVVYAFAGLDITQAAIKSLDPWQDLKEEY
GKGGYEKMTGLKRSHPHLKVSLAIGGWNEGSANYSTLVANNLLRGRFVKQ
VSSFIRKYNFDGLDLDWEYPTQRKGKPADRENFVLLTKELREEFDEHGLL
LTSAIGASKKVIDEAYDVRQISRYLDYLHIMCYDYHGSWDRRVGYNAPLT
APADDPLSVKFSIDYLLKLGAPPEKLVMGLPFYGRTFKTLASGFLNDVSE
GVGFKGPYTREDGFLGYNEICQTLSNQTSGWTREWDPQTSQVLAKSERNV
FTQEINVVTYDSSRSIANKVLFAMSKRLAGVMVWSVDTDDFLGNCKLDED
TYEDFQKVTAAPKRSSQNYPLLRTINEATMLAVDELAVPEPQPDDSENEI
PHGSIADRKNAGASMVSLGLGVTAVFMLLHRLAQ*
BS08048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-PB | 484 | CG2054-PB | 1..484 | 1..484 | 2538 | 100 | Plus |
Cht2-PC | 484 | CG2054-PC | 1..484 | 1..484 | 2538 | 100 | Plus |
Cht2-PA | 484 | CG2054-PA | 1..484 | 1..484 | 2538 | 100 | Plus |
Cht8-PA | 476 | CG9357-PA | 4..397 | 7..426 | 748 | 37.9 | Plus |
Cht4-PA | 462 | CG3986-PA | 23..370 | 40..428 | 723 | 39.9 | Plus |