Clone BS08048 Report

Search the DGRC for BS08048

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCht2-RA
Protein status:BS08048.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08048.3prime Sequence

934 bp (861 high quality bases) assembled on 2006-01-06

> BS08048.3prime
ATGGTCTAGAAAGCTTTCACTGGGCCAACCGGTGCAGGAGCATGAAGACA
GCGGTGACTCCGAGGCCCAGACTGACCATAGAAGCGCCGGCATTCTTGCG
ATCCGCTATGCTGCCGTGCGGAATCTCGTTCTCGGAGTCATCCGGCTGCG
GCTCCGGCACAGCCAGCTCGTCCACGGCCAGCATGGTGGCCTCGTTGATG
GTCCGCAGAAGGGGATAGTTCTGGCTCGATCTCTTGGGCGCGGCAGTCAC
CTTCTGGAAGTCCTCGTACGTGTCCTCGTCCAGCTTGCAGTTACCCAGGA
AGTCGTCCGTGTCCACGGACCACACCATCACACCCGCAAGCCGCTTGGAC
ATGGCGAACAACACCTTGTTGGCGATGGAGCGGGAGCTGTCGTAGGTCAC
CACGTTGATCTCCTGGGTGAAGACGTTTCGCTCGGACTTGGCCAGCACCT
GGCTGGTTTGCGGATCCCACTCCCTTGTCCATCCGGAGGTCTGGTTGCTC
AGTGTCTGGCAGATCTCGTTGTAGCCCAGGAAGCCGTCCTCCCGCGTGTA
GGGTCCCTTGAAGCCTACGCCTTCGCTGACGTCGTTCAGGAATCCACTGG
CCAACGTCTTGAAGGTGCGTCCGTAGAAGGGCAGGCCCATCACCAGCTTC
TCCGGCGGGGCGCCCAGTTTCAGCAGGTAGTCAATGGAGAATTTCACACT
CAGCGGATCATCCGCGGGCGCCGTGAGCGGAGCATTGTAACCAACTCGGC
GGTCCCAGCTGCCGTGGTAGTCGTAGCACATGATGTGCAGGTAGTCCAAG
TAACGCGAGATCTGCCGCACGTCATAGGCCTCGTCGATCACCTTCTTGGA
GGCTCCGATGGCGGAGGTCAGCAGCAGGCCGTGCTCGTCGAACTCCTCGC
GCAGCTCCTTGGTCAGCAAAACGAAGTTCTCGCG

BS08048.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2054-PA 1455 Cht2-RA 538..1455 934..17 4565 99.8 Minus
CG3986-PA 1389 Cht4-RA 846..889 551..508 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 2690 CG2054-RB 1468..2385 934..17 4575 99.9 Minus
Cht2-RC 1911 CG2054-RC 904..1821 934..17 4575 99.9 Minus
Cht2-RA 1645 CG2054-RA 638..1555 934..17 4575 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1752633..1753311 17..695 3395 100 Plus
3L 28110227 3L 1753438..1753677 695..934 1185 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 04:24:20 has no hits.

BS08048.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:57 Download gff for BS08048.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-PA 538..1455 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:33 Download gff for BS08048.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2054-PA 538..1455 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:45:22 Download gff for BS08048.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 638..1561 11..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:57 Download gff for BS08048.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 638..1561 11..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:57 Download gff for BS08048.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1752627..1753310 11..694 99 <- Plus
3L 1753438..1753677 695..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:45:22 Download gff for BS08048.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1752627..1753310 11..694 99 <- Plus
arm_3L 1753438..1753677 695..934 99   Plus

BS08048.5prime Sequence

914 bp (815 high quality bases) assembled on 2006-01-06

> BS08048.5prime
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATCAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCG

BS08048.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2054-PA 1455 Cht2-RA 1..898 17..914 4490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 2690 CG2054-RB 931..1828 17..914 4490 100 Plus
Cht2-RC 1911 CG2054-RC 367..1264 17..914 4490 100 Plus
Cht2-RA 1645 CG2054-RA 101..998 17..914 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1753438..1753944 793..287 2535 100 Minus
3L 28110227 3L 1754001..1754168 287..120 840 100 Minus
3L 28110227 3L 1753190..1753311 914..793 610 100 Minus
3L 28110227 3L 1754236..1754342 123..17 535 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:51:26 has no hits.

BS08048.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:31:58 Download gff for BS08048.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:34 Download gff for BS08048.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2054-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:15 Download gff for BS08048.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 95..998 9..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:55:28 Download gff for BS08048.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 95..998 9..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:55:28 Download gff for BS08048.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1754237..1754348 9..122 96   Minus
3L 1753190..1753310 794..914 100 <- Minus
3L 1753438..1753943 288..793 100 <- Minus
3L 1754001..1754165 123..287 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:15 Download gff for BS08048.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1753190..1753310 794..914 100 <- Minus
arm_3L 1753438..1753943 288..793 100 <- Minus
arm_3L 1754001..1754165 123..287 100 <- Minus
arm_3L 1754237..1754348 9..122 96   Minus

BS08048.complete Sequence

1487 bp (1487 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636076

> BS08048.complete
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATCAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCGAAGGCGTAGGCTTCAAGGGACCCTACACGCGGGAGG
ACGGCTTCCTGGGCTACAACGAGATCTGCCAGACACTGAGCAACCAGACC
TCCGGATGGACAAGGGAGTGGGATCCGCAAACCAGCCAGGTGCTGGCCAA
GTCCGAGCGAAACGTCTTCACCCAGGAGATCAACGTGGTGACCTACGACA
GCTCCCGCTCCATCGCCAACAAGGTGTTGTTCGCCATGTCCAAGCGGCTT
GCGGGTGTGATGGTGTGGTCCGTGGACACGGACGACTTCCTGGGTAACTG
CAAGCTGGACGAGGACACGTACGAGGACTTCCAGAAGGTGACTGCCGCGC
CCAAGAGATCGAGCCAGAACTATCCCCTTCTGCGGACCATCAACGAGGCC
ACCATGCTGGCCGTGGACGAGCTGGCTGTGCCGGAGCCGCAGCCGGATGA
CTCCGAGAACGAGATTCCGCACGGCAGCATAGCGGATCGCAAGAATGCCG
GCGCTTCTATGGTCAGTCTGGGCCTCGGAGTCACCGCTGTCTTCATGCTC
CTGCACCGGTTGGCCCAGTGAAAGCTTTCTAGACCAT

BS08048.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 1455 CG2054-PB 1..1455 17..1471 7275 100 Plus
Cht2-RC 1455 CG2054-PC 1..1455 17..1471 7275 100 Plus
Cht2-RA 1455 CG2054-PA 1..1455 17..1471 7275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 2690 CG2054-RB 931..2385 17..1471 7275 100 Plus
Cht2-RC 1911 CG2054-RC 367..1821 17..1471 7275 100 Plus
Cht2-RA 1645 CG2054-RA 101..1555 17..1471 7275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1752633..1753311 1471..793 3395 100 Minus
3L 28110227 3L 1753438..1753944 793..287 2535 100 Minus
3L 28110227 3L 1754001..1754168 287..120 840 100 Minus
3L 28110227 3L 1754236..1754342 123..17 535 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:21:16 has no hits.

BS08048.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:31 Download gff for BS08048.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 1..1455 17..1471 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:42 Download gff for BS08048.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 90..1556 9..1477 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:11 Download gff for BS08048.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 101..1554 17..1470 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:31 Download gff for BS08048.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 90..1556 9..1477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:58:29 Download gff for BS08048.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 101..1554 17..1470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:58:29 Download gff for BS08048.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1752634..1753310 794..1470 100 <- Minus
3L 1753438..1753943 288..793 100 <- Minus
3L 1754001..1754165 123..287 100 <- Minus
3L 1754237..1754342 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:11 Download gff for BS08048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1752634..1753310 794..1470 100 <- Minus
arm_3L 1753438..1753943 288..793 100 <- Minus
arm_3L 1754001..1754165 123..287 100 <- Minus
arm_3L 1754237..1754342 17..122 100   Minus

BS08048.pep Sequence

Translation from 16 to 1470

> BS08048.pep
MTLRSRLSGEAPQLWLLLLLASTASSLWASVAARTGPLHDKVVVCYVSTW
AVYRPEQGAYAIENFDPNLCTHVVYAFAGLDITQAAIKSLDPWQDLKEEY
GKGGYEKMTGLKRSHPHLKVSLAIGGWNEGSANYSTLVANNLLRGRFVKQ
VSSFIRKYNFDGLDLDWEYPTQRKGKPADRENFVLLTKELREEFDEHGLL
LTSAIGASKKVIDEAYDVRQISRYLDYLHIMCYDYHGSWDRRVGYNAPLT
APADDPLSVKFSIDYLLKLGAPPEKLVMGLPFYGRTFKTLASGFLNDVSE
GVGFKGPYTREDGFLGYNEICQTLSNQTSGWTREWDPQTSQVLAKSERNV
FTQEINVVTYDSSRSIANKVLFAMSKRLAGVMVWSVDTDDFLGNCKLDED
TYEDFQKVTAAPKRSSQNYPLLRTINEATMLAVDELAVPEPQPDDSENEI
PHGSIADRKNAGASMVSLGLGVTAVFMLLHRLAQ*

BS08048.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-PB 484 CG2054-PB 1..484 1..484 2538 100 Plus
Cht2-PC 484 CG2054-PC 1..484 1..484 2538 100 Plus
Cht2-PA 484 CG2054-PA 1..484 1..484 2538 100 Plus
Cht8-PA 476 CG9357-PA 4..397 7..426 748 37.9 Plus
Cht4-PA 462 CG3986-PA 23..370 40..428 723 39.9 Plus