Clone Sequence Records
BS08050.3prime Sequence
875 bp (854 high quality bases) assembled on 2006-01-06
> BS08050.3prime
ATGGTCTAGAAAGCTTCTAGGTGCTAAACGTTCCACAGCAATCAGATGGG
ATTTTGTCTGTTGGTCCCCAGCCCAATGGCACACCCAAGCGGCTATTTTC
CTGCTTAAGCCACTGGTAGAGCGGTTCAAAGTACTCCAGCAGAGCGGCTG
GGTCCATTTCCGTTTCGCCTGTAAACTCCTCCAACACCTCCTTCCAATGG
CGTGAGTTGCCCTTTGAGAGGAACTGGCTCAGTGATCGTCCAGCTGCTTT
GCTTCCAAAGATATCACAGTTGTCCAGAGTCAGACGACTATTGTTGGGCG
CATATTGTCCGGCCTTGCGGCACAGAGCCTTGTGGAACTGAAACTGGAAG
ATGTGGGCGGCAAAGTAGCGCAGGTACTCCACATCTGCATCAATGTGATA
CTTGGCTGGCGGGTCAAAGTCCTTTTCGGTGCGGAATACTGGTGGCTCGA
CGCCGCCAAACTCGGATCGCATCTGCCAGAAGCCGCAGTTCCATTGCGAC
TCATCTAGCTCATTGCGAAAAACGGCATAGCGATACTTATCCACGGCGTA
GCCAAAGGGTAGGAAGACAATCTTGGAGAGGGCCTGCTTGAACAACTGAT
TGATTCGACTCTTTTCGTCTAGTCTACCATTTTCGATCAGACCAATGGCC
TTCAAGTGCTTGGCCGACATCACCGACAGGGCTATCACATCGCCCACAGC
TTCATGGAAGCCAGGATTGGGAGCTCCCCGGTAGACAGCCGGCTGTTGTT
CGTATTGCAGATAGTACTGAATGTGTCCTAGCTCATGATGCACTACATAA
AAGTAGTGGCTGTCCACTTCGGTGCACATCTTGATCCTTACATCGCTGTC
TTGGTAAAAGTCCCATGCGGAGGCG
BS08050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10593-PA | 1893 | Acer-RA | 1035..1893 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acer-RB | 3198 | CG10593-RB | 1380..2239 | 875..16 | 4300 | 100 | Minus |
Acer-RA | 2342 | CG10593-RA | 1380..2239 | 875..16 | 4300 | 100 | Minus |
Ance-RC | 2048 | CG8827-RC | 1490..1731 | 493..252 | 235 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8523864..8524684 | 875..55 | 4105 | 100 | Minus |
2L | 23513712 | 2L | 8524743..8524781 | 54..16 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:32 has no hits.
BS08050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:01 Download gff for
BS08050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-PA | 1035..1893 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:38 Download gff for
BS08050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10593-PA | 1035..1893 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:01 Download gff for
BS08050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 1380..2241 | 12..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:38 Download gff for
BS08050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 1380..2241 | 12..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:38 Download gff for
BS08050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8523864..8524684 | 55..875 | 100 | -> | Minus |
2L | 8524743..8524783 | 12..54 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:01 Download gff for
BS08050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8523864..8524684 | 55..875 | 100 | -> | Minus |
arm_2L | 8524743..8524783 | 12..54 | 95 | | Minus |
BS08050.5prime Sequence
874 bp (828 high quality bases) assembled on 2006-01-06
> BS08050.5prime
GAAGTTATCAGTCGACATGGGGGCATGCAATATAACAGTCTTATTGCTGG
TCATCATGTTGTGGCTACCCCATGGTCTGTCCATGGGCAATAGCTGCTCG
GCATCGGTGCTGGAGGCGCGTAGGTTCTTCGAGCTGGAAAATGAACAATT
GCGAAGGCGTTTCCATGAGGAATTCCTTTCCGGCTACAACTATAACACCA
ATGTAACGGAGGCGAATCGCCAGGCCATGATCGAAGTGTATGCCCGCAAT
GCGGAACTGAATAAGCGACTCGCGCAGCAGATAAAGTCCTCCGATTACGT
TCAGTCCGAGGATGCGGATATACGACGACAGGCCGAGCACCTATCCAAAT
TGGGTGCATCCGCTCTGAATGCCGACGACTACCTGGCCCTGCAGAATGCC
ATCAGTTCGATGCAGACGAACTATGCTACCGCCACCGTGTGCTCGTACAC
CAATCGCAGTGATTGCTCTCTCACCCTGGAGCCGCACATACAGGAGCGTC
TGTCCCATAGCCGTGATCCTGCCGAACTGGCTTGGTATTGGCGGGAGTGG
CACGATAAGTCCGGAACTCCCATGCGGCAGAACTTCGCCGAGTATGTGCG
ACTGACGCGCAAGGCATCTCAGTTGAATGGTCACCGCTCCTATGCCGACT
ACTGGGTGCAGTTCTACGAGGACCCGGACTTTGAGCGACAACTGGATGCC
ACTTTTAAGCAGCTGCTGCCCTTCTACCGACAGCTCCACGGCTACGTTCG
CTTTCGTTTGCGGCAGCACTACGGTCCGGATGTGATGCCAGCGGAGGGAA
ACATACCCATAAGCCTGCTGGGCAACATGTGGGGTCAGTCGTGGAACGAG
CTGCTCGATTTGTTTACTCCGTAT
BS08050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10593-PA | 1893 | Acer-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acer-RB | 3198 | CG10593-RB | 346..1203 | 17..874 | 4290 | 100 | Plus |
Acer-RA | 2342 | CG10593-RA | 346..1203 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8522401..8522968 | 64..631 | 2840 | 100 | Plus |
2L | 23513712 | 2L | 8523442..8523687 | 629..874 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 8522278..8522325 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:06:13 has no hits.
BS08050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:02 Download gff for
BS08050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:40 Download gff for
BS08050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10593-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:48 Download gff for
BS08050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 343..1203 | 14..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:55 Download gff for
BS08050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 343..1203 | 14..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:55 Download gff for
BS08050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8522275..8522325 | 14..64 | 98 | -> | Plus |
2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
2L | 8523443..8523687 | 630..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:48 Download gff for
BS08050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8523443..8523687 | 630..874 | 100 | | Plus |
arm_2L | 8522275..8522325 | 14..64 | 98 | -> | Plus |
arm_2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
BS08050.complete Sequence
1925 bp assembled on 2008-01-03
GenBank Submission: FJ636077
> BS08050.complete
GAAGTTATCAGTCGACATGGGGGCATGCAATATAACAGTCTTATTGCTGG
TCATCATGTTGTGGCTACCCCATGGTCTGTCCATGGGCAATAGCTGCTCG
GCATCGGTGCTGGAGGCGCGTAGGTTCTTCGAGCTGGAAAATGAACAATT
GCGAAGGCGTTTCCATGAGGAATTCCTTTCCGGCTACAACTATAACACCA
ATGTAACGGAGGCGAATCGCCAGGCCATGATCGAAGTGTATGCCCGCAAT
GCGGAACTGAATAAGCGACTCGCGCAGCAGATAAAGTCCTCCGATTACGT
TCAGTCCGAGGATGCGGATATACGACGACAGGCCGAGCACCTATCCAAAT
TGGGTGCATCCGCTCTGAATGCCGACGACTACCTGGCCCTGCAGAATGCC
ATCAGTTCGATGCAGACGAACTATGCTACCGCCACCGTGTGCTCGTACAC
CAATCGCAGTGATTGCTCTCTCACCCTGGAGCCGCACATACAGGAGCGTC
TGTCCCATAGCCGTGATCCTGCCGAACTGGCTTGGTATTGGCGGGAGTGG
CACGATAAGTCCGGAACTCCCATGCGGCAGAACTTCGCCGAGTATGTGCG
ACTGACGCGCAAGGCATCTCAGTTGAATGGTCACCGCTCCTATGCCGACT
ACTGGGTGCAGTTCTACGAGGACCCGGACTTTGAGCGACAACTGGATGCC
ACTTTTAAGCAGCTGCTGCCCTTCTACCGACAGCTCCACGGCTACGTTCG
CTTTCGTTTGCGGCAGCACTACGGTCCGGATGTGATGCCAGCGGAGGGAA
ACATACCCATAAGCCTGCTGGGCAACATGTGGGGTCAGTCGTGGAACGAG
CTGCTCGATTTGTTTACTCCGTATCCGGAGAAGCCGTTTGTGGACGTGAA
GGCCGAAATGGAGAAGCAGGGATACACGGTGCAAAAGCTGTTTGAGCTGG
GTGATCAGTTCTTCCAGTCGCTCGGAATGCGCGCGCTTCCTCCCAGTTTC
TGGAATCTGAGTGTGCTCACCCGTCCCGACGATCGTCACGTGGTTTGCCA
CGCCTCCGCATGGGACTTTTACCAAGACAGCGATGTAAGGATCAAGATGT
GCACCGAAGTGGACAGCCACTACTTTTATGTAGTGCATCATGAGCTAGGA
CACATTCAGTACTATCTGCAATACGAACAACAGCCGGCTGTCTACCGGGG
AGCTCCCAATCCTGGCTTCCATGAAGCTGTGGGCGATGTGATAGCCCTGT
CGGTGATGTCGGCCAAGCACTTGAAGGCCATTGGTCTGATCGAAAATGGT
AGACTAGACGAAAAGAGTCGAATCAATCAGTTGTTCAAGCAGGCCCTCTC
CAAGATTGTCTTCCTACCCTTTGGCTACGCCGTGGATAAGTATCGCTATG
CCGTTTTTCGCAATGAGCTAGATGAGTCGCAATGGAACTGCGGCTTCTGG
CAGATGCGATCCGAGTTTGGCGGCGTCGAGCCACCAGTATTCCGCACCGA
AAAGGACTTTGACCCGCCAGCCAAGTATCACATTGATGCAGATGTGGAGT
ACCTGCGCTACTTTGCCGCCCACATCTTCCAGTTTCAGTTCCACAAGGCT
CTGTGCCGCAAGGCCGGACAATATGCGCCCAACAATAGTCGTCTGACTCT
GGACAACTGTGATATCTTTGGAAGCAAAGCAGCTGGACGATCACTGAGCC
AGTTCCTCTCAAAGGGCAACTCACGCCATTGGAAGGAGGTGTTGGAGGAG
TTTACAGGCGAAACGGAAATGGACCCAGCCGCTCTGCTGGAGTACTTTGA
ACCGCTCTACCAGTGGCTTAAGCAGGAAAATAGCCGCTTGGGTGTGCCAT
TGGGCTGGGGACCAACAGACAAAATCCCATCTGATTGCTGTGGAACGTTT
AGCACCTAGAAGCTTTCTAGACCAT
BS08050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acer-RB | 1893 | CG10593-PB | 1..1893 | 17..1909 | 9465 | 100 | Plus |
Acer-RA | 1893 | CG10593-PA | 1..1893 | 17..1909 | 9465 | 100 | Plus |
Ance-RC | 1848 | CG8827-PC | 1393..1596 | 1433..1636 | 225 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acer-RB | 3198 | CG10593-RB | 346..2239 | 17..1910 | 9470 | 100 | Plus |
Acer-RA | 2342 | CG10593-RA | 346..2239 | 17..1910 | 9470 | 100 | Plus |
Ance-RC | 2048 | CG8827-RC | 1490..1693 | 1433..1636 | 225 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8523442..8524684 | 629..1871 | 6215 | 100 | Plus |
2L | 23513712 | 2L | 8522401..8522968 | 64..631 | 2840 | 100 | Plus |
2L | 23513712 | 2L | 8522278..8522325 | 17..64 | 240 | 100 | Plus |
2L | 23513712 | 2L | 8524743..8524781 | 1872..1910 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:44:52 has no hits.
BS08050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:52 Download gff for
BS08050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 1..1893 | 17..1909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:59 Download gff for
BS08050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 380..2272 | 17..1909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:08 Download gff for
BS08050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 346..2238 | 17..1909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:52 Download gff for
BS08050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 377..2275 | 14..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:38 Download gff for
BS08050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acer-RA | 346..2238 | 17..1909 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:38 Download gff for
BS08050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8522278..8522325 | 17..64 | 100 | -> | Plus |
2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
2L | 8523443..8524684 | 630..1871 | 100 | -> | Plus |
2L | 8524743..8524780 | 1872..1909 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:08 Download gff for
BS08050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8524743..8524780 | 1872..1909 | 100 | | Plus |
arm_2L | 8522278..8522325 | 17..64 | 100 | -> | Plus |
arm_2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
arm_2L | 8523443..8524684 | 630..1871 | 100 | -> | Plus |
BS08050.pep Sequence
Translation from 16 to 1908
> BS08050.pep
MGACNITVLLLVIMLWLPHGLSMGNSCSASVLEARRFFELENEQLRRRFH
EEFLSGYNYNTNVTEANRQAMIEVYARNAELNKRLAQQIKSSDYVQSEDA
DIRRQAEHLSKLGASALNADDYLALQNAISSMQTNYATATVCSYTNRSDC
SLTLEPHIQERLSHSRDPAELAWYWREWHDKSGTPMRQNFAEYVRLTRKA
SQLNGHRSYADYWVQFYEDPDFERQLDATFKQLLPFYRQLHGYVRFRLRQ
HYGPDVMPAEGNIPISLLGNMWGQSWNELLDLFTPYPEKPFVDVKAEMEK
QGYTVQKLFELGDQFFQSLGMRALPPSFWNLSVLTRPDDRHVVCHASAWD
FYQDSDVRIKMCTEVDSHYFYVVHHELGHIQYYLQYEQQPAVYRGAPNPG
FHEAVGDVIALSVMSAKHLKAIGLIENGRLDEKSRINQLFKQALSKIVFL
PFGYAVDKYRYAVFRNELDESQWNCGFWQMRSEFGGVEPPVFRTEKDFDP
PAKYHIDADVEYLRYFAAHIFQFQFHKALCRKAGQYAPNNSRLTLDNCDI
FGSKAAGRSLSQFLSKGNSRHWKEVLEEFTGETEMDPAALLEYFEPLYQW
LKQENSRLGVPLGWGPTDKIPSDCCGTFST*
BS08050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acer-PB | 630 | CG10593-PB | 1..630 | 1..630 | 3393 | 100 | Plus |
Acer-PA | 630 | CG10593-PA | 1..630 | 1..630 | 3393 | 100 | Plus |
Ance-PC | 615 | CG8827-PC | 23..614 | 32..622 | 1663 | 51 | Plus |
Ance-PB | 615 | CG8827-PB | 23..614 | 32..622 | 1663 | 51 | Plus |
Ance-PA | 615 | CG8827-PA | 23..614 | 32..622 | 1663 | 51 | Plus |