Clone BS08050 Report

Search the DGRC for BS08050

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptAcer-RA
Protein status:BS08050.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08050.3prime Sequence

875 bp (854 high quality bases) assembled on 2006-01-06

> BS08050.3prime
ATGGTCTAGAAAGCTTCTAGGTGCTAAACGTTCCACAGCAATCAGATGGG
ATTTTGTCTGTTGGTCCCCAGCCCAATGGCACACCCAAGCGGCTATTTTC
CTGCTTAAGCCACTGGTAGAGCGGTTCAAAGTACTCCAGCAGAGCGGCTG
GGTCCATTTCCGTTTCGCCTGTAAACTCCTCCAACACCTCCTTCCAATGG
CGTGAGTTGCCCTTTGAGAGGAACTGGCTCAGTGATCGTCCAGCTGCTTT
GCTTCCAAAGATATCACAGTTGTCCAGAGTCAGACGACTATTGTTGGGCG
CATATTGTCCGGCCTTGCGGCACAGAGCCTTGTGGAACTGAAACTGGAAG
ATGTGGGCGGCAAAGTAGCGCAGGTACTCCACATCTGCATCAATGTGATA
CTTGGCTGGCGGGTCAAAGTCCTTTTCGGTGCGGAATACTGGTGGCTCGA
CGCCGCCAAACTCGGATCGCATCTGCCAGAAGCCGCAGTTCCATTGCGAC
TCATCTAGCTCATTGCGAAAAACGGCATAGCGATACTTATCCACGGCGTA
GCCAAAGGGTAGGAAGACAATCTTGGAGAGGGCCTGCTTGAACAACTGAT
TGATTCGACTCTTTTCGTCTAGTCTACCATTTTCGATCAGACCAATGGCC
TTCAAGTGCTTGGCCGACATCACCGACAGGGCTATCACATCGCCCACAGC
TTCATGGAAGCCAGGATTGGGAGCTCCCCGGTAGACAGCCGGCTGTTGTT
CGTATTGCAGATAGTACTGAATGTGTCCTAGCTCATGATGCACTACATAA
AAGTAGTGGCTGTCCACTTCGGTGCACATCTTGATCCTTACATCGCTGTC
TTGGTAAAAGTCCCATGCGGAGGCG

BS08050.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10593-PA 1893 Acer-RA 1035..1893 875..17 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Acer-RB 3198 CG10593-RB 1380..2239 875..16 4300 100 Minus
Acer-RA 2342 CG10593-RA 1380..2239 875..16 4300 100 Minus
Ance-RC 2048 CG8827-RC 1490..1731 493..252 235 73.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8523864..8524684 875..55 4105 100 Minus
2L 23513712 2L 8524743..8524781 54..16 195 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:50:32 has no hits.

BS08050.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:01 Download gff for BS08050.3prime
Subject Subject Range Query Range Percent Splice Strand
Acer-PA 1035..1893 17..875 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:38 Download gff for BS08050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10593-PA 1035..1893 17..875 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:01 Download gff for BS08050.3prime
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 1380..2241 12..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:38 Download gff for BS08050.3prime
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 1380..2241 12..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:38 Download gff for BS08050.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8523864..8524684 55..875 100 -> Minus
2L 8524743..8524783 12..54 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:01 Download gff for BS08050.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8523864..8524684 55..875 100 -> Minus
arm_2L 8524743..8524783 12..54 95   Minus

BS08050.5prime Sequence

874 bp (828 high quality bases) assembled on 2006-01-06

> BS08050.5prime
GAAGTTATCAGTCGACATGGGGGCATGCAATATAACAGTCTTATTGCTGG
TCATCATGTTGTGGCTACCCCATGGTCTGTCCATGGGCAATAGCTGCTCG
GCATCGGTGCTGGAGGCGCGTAGGTTCTTCGAGCTGGAAAATGAACAATT
GCGAAGGCGTTTCCATGAGGAATTCCTTTCCGGCTACAACTATAACACCA
ATGTAACGGAGGCGAATCGCCAGGCCATGATCGAAGTGTATGCCCGCAAT
GCGGAACTGAATAAGCGACTCGCGCAGCAGATAAAGTCCTCCGATTACGT
TCAGTCCGAGGATGCGGATATACGACGACAGGCCGAGCACCTATCCAAAT
TGGGTGCATCCGCTCTGAATGCCGACGACTACCTGGCCCTGCAGAATGCC
ATCAGTTCGATGCAGACGAACTATGCTACCGCCACCGTGTGCTCGTACAC
CAATCGCAGTGATTGCTCTCTCACCCTGGAGCCGCACATACAGGAGCGTC
TGTCCCATAGCCGTGATCCTGCCGAACTGGCTTGGTATTGGCGGGAGTGG
CACGATAAGTCCGGAACTCCCATGCGGCAGAACTTCGCCGAGTATGTGCG
ACTGACGCGCAAGGCATCTCAGTTGAATGGTCACCGCTCCTATGCCGACT
ACTGGGTGCAGTTCTACGAGGACCCGGACTTTGAGCGACAACTGGATGCC
ACTTTTAAGCAGCTGCTGCCCTTCTACCGACAGCTCCACGGCTACGTTCG
CTTTCGTTTGCGGCAGCACTACGGTCCGGATGTGATGCCAGCGGAGGGAA
ACATACCCATAAGCCTGCTGGGCAACATGTGGGGTCAGTCGTGGAACGAG
CTGCTCGATTTGTTTACTCCGTAT

BS08050.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10593-PA 1893 Acer-RA 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Acer-RB 3198 CG10593-RB 346..1203 17..874 4290 100 Plus
Acer-RA 2342 CG10593-RA 346..1203 17..874 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8522401..8522968 64..631 2840 100 Plus
2L 23513712 2L 8523442..8523687 629..874 1230 100 Plus
2L 23513712 2L 8522278..8522325 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:06:13 has no hits.

BS08050.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:02 Download gff for BS08050.5prime
Subject Subject Range Query Range Percent Splice Strand
Acer-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:40 Download gff for BS08050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10593-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:48 Download gff for BS08050.5prime
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 343..1203 14..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:55 Download gff for BS08050.5prime
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 343..1203 14..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:55 Download gff for BS08050.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8522275..8522325 14..64 98 -> Plus
2L 8522402..8522966 65..629 100 -> Plus
2L 8523443..8523687 630..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:48 Download gff for BS08050.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8523443..8523687 630..874 100   Plus
arm_2L 8522275..8522325 14..64 98 -> Plus
arm_2L 8522402..8522966 65..629 100 -> Plus

BS08050.complete Sequence

1925 bp assembled on 2008-01-03

GenBank Submission: FJ636077

> BS08050.complete
GAAGTTATCAGTCGACATGGGGGCATGCAATATAACAGTCTTATTGCTGG
TCATCATGTTGTGGCTACCCCATGGTCTGTCCATGGGCAATAGCTGCTCG
GCATCGGTGCTGGAGGCGCGTAGGTTCTTCGAGCTGGAAAATGAACAATT
GCGAAGGCGTTTCCATGAGGAATTCCTTTCCGGCTACAACTATAACACCA
ATGTAACGGAGGCGAATCGCCAGGCCATGATCGAAGTGTATGCCCGCAAT
GCGGAACTGAATAAGCGACTCGCGCAGCAGATAAAGTCCTCCGATTACGT
TCAGTCCGAGGATGCGGATATACGACGACAGGCCGAGCACCTATCCAAAT
TGGGTGCATCCGCTCTGAATGCCGACGACTACCTGGCCCTGCAGAATGCC
ATCAGTTCGATGCAGACGAACTATGCTACCGCCACCGTGTGCTCGTACAC
CAATCGCAGTGATTGCTCTCTCACCCTGGAGCCGCACATACAGGAGCGTC
TGTCCCATAGCCGTGATCCTGCCGAACTGGCTTGGTATTGGCGGGAGTGG
CACGATAAGTCCGGAACTCCCATGCGGCAGAACTTCGCCGAGTATGTGCG
ACTGACGCGCAAGGCATCTCAGTTGAATGGTCACCGCTCCTATGCCGACT
ACTGGGTGCAGTTCTACGAGGACCCGGACTTTGAGCGACAACTGGATGCC
ACTTTTAAGCAGCTGCTGCCCTTCTACCGACAGCTCCACGGCTACGTTCG
CTTTCGTTTGCGGCAGCACTACGGTCCGGATGTGATGCCAGCGGAGGGAA
ACATACCCATAAGCCTGCTGGGCAACATGTGGGGTCAGTCGTGGAACGAG
CTGCTCGATTTGTTTACTCCGTATCCGGAGAAGCCGTTTGTGGACGTGAA
GGCCGAAATGGAGAAGCAGGGATACACGGTGCAAAAGCTGTTTGAGCTGG
GTGATCAGTTCTTCCAGTCGCTCGGAATGCGCGCGCTTCCTCCCAGTTTC
TGGAATCTGAGTGTGCTCACCCGTCCCGACGATCGTCACGTGGTTTGCCA
CGCCTCCGCATGGGACTTTTACCAAGACAGCGATGTAAGGATCAAGATGT
GCACCGAAGTGGACAGCCACTACTTTTATGTAGTGCATCATGAGCTAGGA
CACATTCAGTACTATCTGCAATACGAACAACAGCCGGCTGTCTACCGGGG
AGCTCCCAATCCTGGCTTCCATGAAGCTGTGGGCGATGTGATAGCCCTGT
CGGTGATGTCGGCCAAGCACTTGAAGGCCATTGGTCTGATCGAAAATGGT
AGACTAGACGAAAAGAGTCGAATCAATCAGTTGTTCAAGCAGGCCCTCTC
CAAGATTGTCTTCCTACCCTTTGGCTACGCCGTGGATAAGTATCGCTATG
CCGTTTTTCGCAATGAGCTAGATGAGTCGCAATGGAACTGCGGCTTCTGG
CAGATGCGATCCGAGTTTGGCGGCGTCGAGCCACCAGTATTCCGCACCGA
AAAGGACTTTGACCCGCCAGCCAAGTATCACATTGATGCAGATGTGGAGT
ACCTGCGCTACTTTGCCGCCCACATCTTCCAGTTTCAGTTCCACAAGGCT
CTGTGCCGCAAGGCCGGACAATATGCGCCCAACAATAGTCGTCTGACTCT
GGACAACTGTGATATCTTTGGAAGCAAAGCAGCTGGACGATCACTGAGCC
AGTTCCTCTCAAAGGGCAACTCACGCCATTGGAAGGAGGTGTTGGAGGAG
TTTACAGGCGAAACGGAAATGGACCCAGCCGCTCTGCTGGAGTACTTTGA
ACCGCTCTACCAGTGGCTTAAGCAGGAAAATAGCCGCTTGGGTGTGCCAT
TGGGCTGGGGACCAACAGACAAAATCCCATCTGATTGCTGTGGAACGTTT
AGCACCTAGAAGCTTTCTAGACCAT

BS08050.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Acer-RB 1893 CG10593-PB 1..1893 17..1909 9465 100 Plus
Acer-RA 1893 CG10593-PA 1..1893 17..1909 9465 100 Plus
Ance-RC 1848 CG8827-PC 1393..1596 1433..1636 225 74 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
Acer-RB 3198 CG10593-RB 346..2239 17..1910 9470 100 Plus
Acer-RA 2342 CG10593-RA 346..2239 17..1910 9470 100 Plus
Ance-RC 2048 CG8827-RC 1490..1693 1433..1636 225 74 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8523442..8524684 629..1871 6215 100 Plus
2L 23513712 2L 8522401..8522968 64..631 2840 100 Plus
2L 23513712 2L 8522278..8522325 17..64 240 100 Plus
2L 23513712 2L 8524743..8524781 1872..1910 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:44:52 has no hits.

BS08050.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:52 Download gff for BS08050.complete
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 1..1893 17..1909 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:59 Download gff for BS08050.complete
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 380..2272 17..1909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:08 Download gff for BS08050.complete
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 346..2238 17..1909 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:52 Download gff for BS08050.complete
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 377..2275 14..1914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:38 Download gff for BS08050.complete
Subject Subject Range Query Range Percent Splice Strand
Acer-RA 346..2238 17..1909 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:38 Download gff for BS08050.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8522278..8522325 17..64 100 -> Plus
2L 8522402..8522966 65..629 100 -> Plus
2L 8523443..8524684 630..1871 100 -> Plus
2L 8524743..8524780 1872..1909 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:08 Download gff for BS08050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8524743..8524780 1872..1909 100   Plus
arm_2L 8522278..8522325 17..64 100 -> Plus
arm_2L 8522402..8522966 65..629 100 -> Plus
arm_2L 8523443..8524684 630..1871 100 -> Plus

BS08050.pep Sequence

Translation from 16 to 1908

> BS08050.pep
MGACNITVLLLVIMLWLPHGLSMGNSCSASVLEARRFFELENEQLRRRFH
EEFLSGYNYNTNVTEANRQAMIEVYARNAELNKRLAQQIKSSDYVQSEDA
DIRRQAEHLSKLGASALNADDYLALQNAISSMQTNYATATVCSYTNRSDC
SLTLEPHIQERLSHSRDPAELAWYWREWHDKSGTPMRQNFAEYVRLTRKA
SQLNGHRSYADYWVQFYEDPDFERQLDATFKQLLPFYRQLHGYVRFRLRQ
HYGPDVMPAEGNIPISLLGNMWGQSWNELLDLFTPYPEKPFVDVKAEMEK
QGYTVQKLFELGDQFFQSLGMRALPPSFWNLSVLTRPDDRHVVCHASAWD
FYQDSDVRIKMCTEVDSHYFYVVHHELGHIQYYLQYEQQPAVYRGAPNPG
FHEAVGDVIALSVMSAKHLKAIGLIENGRLDEKSRINQLFKQALSKIVFL
PFGYAVDKYRYAVFRNELDESQWNCGFWQMRSEFGGVEPPVFRTEKDFDP
PAKYHIDADVEYLRYFAAHIFQFQFHKALCRKAGQYAPNNSRLTLDNCDI
FGSKAAGRSLSQFLSKGNSRHWKEVLEEFTGETEMDPAALLEYFEPLYQW
LKQENSRLGVPLGWGPTDKIPSDCCGTFST*

BS08050.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
Acer-PB 630 CG10593-PB 1..630 1..630 3393 100 Plus
Acer-PA 630 CG10593-PA 1..630 1..630 3393 100 Plus
Ance-PC 615 CG8827-PC 23..614 32..622 1663 51 Plus
Ance-PB 615 CG8827-PB 23..614 32..622 1663 51 Plus
Ance-PA 615 CG8827-PA 23..614 32..622 1663 51 Plus