Clone BS08052 Report

Search the DGRC for BS08052

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptArt1-RA
Protein status:BS08052.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08052.3prime Sequence

833 bp (789 high quality bases) assembled on 2006-01-06

> BS08052.3prime
ATGGTCTAGAAAGCTTCTAGCGCATGCGGTATGTGTTCGACTCCTGAATT
TGAGACAATTCGCCCTTGAAATTAATGTCGATGACGAAGTCCAGGTCACG
GTTGTTCCGCTCGTTGGGCTTCATCTGGAACGTGCCAGTGATCTCCTCGT
TCTTCTTTGCCGTCATGTGGTCATCGAGGTAGAACACGGTTTGCTTCCAA
TGCGTGTATGTGGAGTCTGGTGACGTACTGAACCCAAGACGCTTGTGGCA
CTTGGTGAACTCTATATTAAAGTAGGTGACTAATGCCTGCACGAAGTCGT
TGCGCTTGATGCATAGGCTGAACTTGGACGAGAAGTTAAGATCGGCCTTT
TGCACGGTATACAGATCCACCTCCTTGACCATGCAAGATGTGGATACCAC
TTGCTTGGGATCGACCACGTCGACCAGTGGCTCGGTCACGGCCACCTTAC
GAATGCAGCTCATGTCGAAGCCGTAGACATCGTCCCACCAGTTGATCTTC
TCGTCCTTGTACTGTCTGTCCTCGATGGCCGTGATATACAGCGTGCCCCT
ATCTGGGAACATCATGCCGTCCTTCTTCAGCCACTTGTCCCGAGCGTACA
ACACTGTATCCAGCATGGATTCGTAGAACAGGCAGTAACCCATCCACTCG
GAAATAATAATGTCCACTCCCTCAATACCATTTGGAAGCTCAATCTCCTC
AATCTTGCCCTTGACAACCGTGATTACATCCTGCAGATTGTTGTCAATGA
CCACTTGGCGGGCAAACTCAATGATGTTGGAGCAATCGACGGCCATCACC
TGAGCAGCACCGGCTTTGGCAGCGAACATGGAG

BS08052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6554-PA 1131 Art1-RA 315..1131 833..17 4035 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
Art1-RA 1528 CG6554-RA 427..1243 833..17 4055 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10786766..10787388 17..639 3115 100 Plus
3R 32079331 3R 10787475..10787669 639..833 945 99 Plus
Blast to na_te.dros performed on 2015-02-02 18:52:38 has no hits.

BS08052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:05 Download gff for BS08052.3prime
Subject Subject Range Query Range Percent Splice Strand
Art1-PA 315..1131 17..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:44 Download gff for BS08052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6554-PA 315..1131 17..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:09 Download gff for BS08052.3prime
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 427..1247 13..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:10 Download gff for BS08052.3prime
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 427..1247 13..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:10 Download gff for BS08052.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10786762..10787387 13..638 99 <- Plus
3R 10787475..10787669 639..833 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:09 Download gff for BS08052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6612484..6613109 13..638 99 <- Plus
arm_3R 6613197..6613391 639..833 98   Plus

BS08052.5prime Sequence

826 bp (778 high quality bases) assembled on 2006-01-06

> BS08052.5prime
GAAGTTATCAGTCGACATGGCCAGCACAGACATTCCCATGGAGGCAGCTG
TGGAATCGGCGACCGGCATCACGCCCAATTCAAATGCGAACTCAAACAAT
GTGGCGAAGAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATCCCAATGC
CAACGCCGACGAGATGACGTCCCGCGACTATTACTTTGACTCCTATGCCC
ATTTCGGGATCCACGAGGAGATGCTCAAGGACGAAGTGCGCACCGTCACA
TACCGCAACGCCATGTACCACAACAAGCATCTGTTTCAGGGCAAGACCGT
ACTGGACGTGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCTGCCAAAG
CCGGTGCTGCTCAGGTGATTGCCGTCGACTGCTCCAACATCATTGAGTTT
GCCCGCCAAGTGGTCATTGACAACAATCTGCAGGATGTAATCACGGTTGT
CAAGGGCAAGATTGAGGAGATTGAGCTTCCAAATGGTATTGAGGGAGTGG
ACATTATTATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGAATCCATG
CTGGATACAGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGGACGGCAT
GATGTTCCCAGATAGGGGCACGCTGTATATCACGGCCATCGAGGACAGAC
AGTACAAGGACGAGAAGATCAACTGGTGGGACGATGTCTACGGCTTCGAC
ATGAGCTGCATTCGTAAGGTGGCCGTGACCGAGCCACTGGTCGACGTGGT
CGATCCCAAGCAAGTGGTATCCACATCTTGCATGGTCAAGGAGGTGGATC
TGTATACCGTGCAAAAGGCCGATCTT

BS08052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6554-PA 1131 Art1-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Art1-RA 1528 CG6554-RA 113..922 17..826 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10787087..10787388 826..525 1510 100 Minus
3R 32079331 3R 10787773..10788049 295..19 1385 100 Minus
3R 32079331 3R 10787475..10787706 525..294 1160 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:55:30 has no hits.

BS08052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:06 Download gff for BS08052.5prime
Subject Subject Range Query Range Percent Splice Strand
Art1-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:45 Download gff for BS08052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6554-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:35 Download gff for BS08052.5prime
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 113..922 17..826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:30 Download gff for BS08052.5prime
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 113..922 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:30 Download gff for BS08052.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10787087..10787387 526..826 100 <- Minus
3R 10787475..10787704 296..525 100 <- Minus
3R 10787773..10788054 12..295 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:35 Download gff for BS08052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6612809..6613109 526..826 100 <- Minus
arm_3R 6613197..6613426 296..525 100 <- Minus
arm_3R 6613495..6613776 12..295 99   Minus

BS08052.complete Sequence

1163 bp (1163 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636078

> BS08052.complete
GAAGTTATCAGTCGACATGGCCAGCACAGACATTCCCATGGAGGCAGCTG
TGGAATCGGCGACCGGCATCACGCCCAATTCAAATGCGAACTCAAACAAT
GTGGCGAAGAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATCCCAATGC
CAACGCCGACGAGATGACGTCCCGCGACTATTACTTTGACTCCTATGCCC
ATTTCGGGATCCACGAGGAGATGCTCAAGGACGAAGTGCGCACCGTCACA
TACCGCAACGCCATGTACCACAACAAGCATCTGTTTCAGGGCAAGACCGT
ACTGGACGTGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCTGCCAAAG
CCGGTGCTGCTCAGGTGATTGCCGTCGACTGCTCCAACATCATTGAGTTT
GCCCGCCAAGTGGTCATTGACAACAATCTGCAGGATGTAATCACGGTTGT
CAAGGGCAAGATTGAGGAGATTGAGCTTCCAAATGGTATTGAGGGAGTGG
ACATTATTATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGAATCCATG
CTGGATACAGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGGACGGCAT
GATGTTCCCAGATAGGGGCACGCTGTATATCACGGCCATCGAGGACAGAC
AGTACAAGGACGAGAAGATCAACTGGTGGGACGATGTCTACGGCTTCGAC
ATGAGCTGCATTCGTAAGGTGGCCGTGACCGAGCCACTGGTCGACGTGGT
CGATCCCAAGCAAGTGGTATCCACATCTTGCATGGTCAAGGAGGTGGATC
TGTATACCGTGCAAAAGGCCGATCTTAACTTCTCGTCCAAGTTCAGCCTA
TGCATCAAGCGCAACGACTTCGTGCAGGCATTAGTCACCTACTTTAATAT
AGAGTTCACCAAGTGCCACAAGCGTCTTGGGTTCAGTACGTCACCAGACT
CCACATACACGCATTGGAAGCAAACCGTGTTCTACCTCGATGACCACATG
ACGGCAAAGAAGAACGAGGAGATCACTGGCACGTTCCAGATGAAGCCCAA
CGAGCGGAACAACCGTGACCTGGACTTCGTCATCGACATTAATTTCAAGG
GCGAATTGTCTCAAATTCAGGAGTCGAACACATACCGCATGCGCTAGAAG
CTTTCTAGACCAT

BS08052.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Art1-RA 1131 CG6554-PA 1..1131 17..1147 5655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
Art1-RA 1528 CG6554-RA 113..1243 17..1147 5655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10786766..10787388 1147..525 3115 100 Minus
3R 32079331 3R 10787773..10788049 295..19 1385 100 Minus
3R 32079331 3R 10787475..10787706 525..294 1160 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:14:02 has no hits.

BS08052.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:33 Download gff for BS08052.complete
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 1..1131 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:45 Download gff for BS08052.complete
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 95..1229 17..1151 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:29 Download gff for BS08052.complete
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 113..1243 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:34 Download gff for BS08052.complete
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 95..1229 17..1151 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:21 Download gff for BS08052.complete
Subject Subject Range Query Range Percent Splice Strand
Art1-RA 113..1243 17..1147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:21 Download gff for BS08052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10786766..10787387 526..1147 100 <- Minus
3R 10787475..10787704 296..525 100 <- Minus
3R 10787773..10788050 17..295 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:29 Download gff for BS08052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6613197..6613426 296..525 100 <- Minus
arm_3R 6612488..6613109 526..1147 100 <- Minus
arm_3R 6613495..6613772 17..295 99   Minus

BS08052.pep Sequence

Translation from 16 to 1146

> BS08052.pep
MASTDIPMEAAVESATGITPNSNANSNNVAKKLPAEGSTGDNPNANADEM
TSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGC
GTGILSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIE
EIELPNGIEGVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDR
GTLYITAIEDRQYKDEKINWWDDVYGFDMSCIRKVAVTEPLVDVVDPKQV
VSTSCMVKEVDLYTVQKADLNFSSKFSLCIKRNDFVQALVTYFNIEFTKC
HKRLGFSTSPDSTYTHWKQTVFYLDDHMTAKKNEEITGTFQMKPNERNNR
DLDFVIDINFKGELSQIQESNTYRMR*

BS08052.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Art1-PA 376 CG6554-PA 1..376 1..376 1981 100 Plus
Art2-PB 355 CG3675-PB 10..335 36..362 768 46.4 Plus
Art2-PA 355 CG3675-PA 10..335 36..362 768 46.4 Plus
Art6-PA 341 CG9927-PA 19..337 56..373 705 40.6 Plus
Art3-PB 474 CG6563-PB 140..464 31..358 636 40.4 Plus