Clone Sequence Records
BS08052.3prime Sequence
833 bp (789 high quality bases) assembled on 2006-01-06
> BS08052.3prime
ATGGTCTAGAAAGCTTCTAGCGCATGCGGTATGTGTTCGACTCCTGAATT
TGAGACAATTCGCCCTTGAAATTAATGTCGATGACGAAGTCCAGGTCACG
GTTGTTCCGCTCGTTGGGCTTCATCTGGAACGTGCCAGTGATCTCCTCGT
TCTTCTTTGCCGTCATGTGGTCATCGAGGTAGAACACGGTTTGCTTCCAA
TGCGTGTATGTGGAGTCTGGTGACGTACTGAACCCAAGACGCTTGTGGCA
CTTGGTGAACTCTATATTAAAGTAGGTGACTAATGCCTGCACGAAGTCGT
TGCGCTTGATGCATAGGCTGAACTTGGACGAGAAGTTAAGATCGGCCTTT
TGCACGGTATACAGATCCACCTCCTTGACCATGCAAGATGTGGATACCAC
TTGCTTGGGATCGACCACGTCGACCAGTGGCTCGGTCACGGCCACCTTAC
GAATGCAGCTCATGTCGAAGCCGTAGACATCGTCCCACCAGTTGATCTTC
TCGTCCTTGTACTGTCTGTCCTCGATGGCCGTGATATACAGCGTGCCCCT
ATCTGGGAACATCATGCCGTCCTTCTTCAGCCACTTGTCCCGAGCGTACA
ACACTGTATCCAGCATGGATTCGTAGAACAGGCAGTAACCCATCCACTCG
GAAATAATAATGTCCACTCCCTCAATACCATTTGGAAGCTCAATCTCCTC
AATCTTGCCCTTGACAACCGTGATTACATCCTGCAGATTGTTGTCAATGA
CCACTTGGCGGGCAAACTCAATGATGTTGGAGCAATCGACGGCCATCACC
TGAGCAGCACCGGCTTTGGCAGCGAACATGGAG
BS08052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6554-PA | 1131 | Art1-RA | 315..1131 | 833..17 | 4035 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art1-RA | 1528 | CG6554-RA | 427..1243 | 833..17 | 4055 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10786766..10787388 | 17..639 | 3115 | 100 | Plus |
3R | 32079331 | 3R | 10787475..10787669 | 639..833 | 945 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:52:38 has no hits.
BS08052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:05 Download gff for
BS08052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-PA | 315..1131 | 17..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:44 Download gff for
BS08052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6554-PA | 315..1131 | 17..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:09 Download gff for
BS08052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 427..1247 | 13..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:10 Download gff for
BS08052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 427..1247 | 13..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:10 Download gff for
BS08052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10786762..10787387 | 13..638 | 99 | <- | Plus |
3R | 10787475..10787669 | 639..833 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:09 Download gff for
BS08052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6612484..6613109 | 13..638 | 99 | <- | Plus |
arm_3R | 6613197..6613391 | 639..833 | 98 | | Plus |
BS08052.5prime Sequence
826 bp (778 high quality bases) assembled on 2006-01-06
> BS08052.5prime
GAAGTTATCAGTCGACATGGCCAGCACAGACATTCCCATGGAGGCAGCTG
TGGAATCGGCGACCGGCATCACGCCCAATTCAAATGCGAACTCAAACAAT
GTGGCGAAGAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATCCCAATGC
CAACGCCGACGAGATGACGTCCCGCGACTATTACTTTGACTCCTATGCCC
ATTTCGGGATCCACGAGGAGATGCTCAAGGACGAAGTGCGCACCGTCACA
TACCGCAACGCCATGTACCACAACAAGCATCTGTTTCAGGGCAAGACCGT
ACTGGACGTGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCTGCCAAAG
CCGGTGCTGCTCAGGTGATTGCCGTCGACTGCTCCAACATCATTGAGTTT
GCCCGCCAAGTGGTCATTGACAACAATCTGCAGGATGTAATCACGGTTGT
CAAGGGCAAGATTGAGGAGATTGAGCTTCCAAATGGTATTGAGGGAGTGG
ACATTATTATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGAATCCATG
CTGGATACAGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGGACGGCAT
GATGTTCCCAGATAGGGGCACGCTGTATATCACGGCCATCGAGGACAGAC
AGTACAAGGACGAGAAGATCAACTGGTGGGACGATGTCTACGGCTTCGAC
ATGAGCTGCATTCGTAAGGTGGCCGTGACCGAGCCACTGGTCGACGTGGT
CGATCCCAAGCAAGTGGTATCCACATCTTGCATGGTCAAGGAGGTGGATC
TGTATACCGTGCAAAAGGCCGATCTT
BS08052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6554-PA | 1131 | Art1-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art1-RA | 1528 | CG6554-RA | 113..922 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10787087..10787388 | 826..525 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 10787773..10788049 | 295..19 | 1385 | 100 | Minus |
3R | 32079331 | 3R | 10787475..10787706 | 525..294 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:55:30 has no hits.
BS08052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:06 Download gff for
BS08052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:45 Download gff for
BS08052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6554-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:35 Download gff for
BS08052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 113..922 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:30 Download gff for
BS08052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 113..922 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:30 Download gff for
BS08052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10787087..10787387 | 526..826 | 100 | <- | Minus |
3R | 10787475..10787704 | 296..525 | 100 | <- | Minus |
3R | 10787773..10788054 | 12..295 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:35 Download gff for
BS08052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6612809..6613109 | 526..826 | 100 | <- | Minus |
arm_3R | 6613197..6613426 | 296..525 | 100 | <- | Minus |
arm_3R | 6613495..6613776 | 12..295 | 99 | | Minus |
BS08052.complete Sequence
1163 bp (1163 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636078
> BS08052.complete
GAAGTTATCAGTCGACATGGCCAGCACAGACATTCCCATGGAGGCAGCTG
TGGAATCGGCGACCGGCATCACGCCCAATTCAAATGCGAACTCAAACAAT
GTGGCGAAGAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATCCCAATGC
CAACGCCGACGAGATGACGTCCCGCGACTATTACTTTGACTCCTATGCCC
ATTTCGGGATCCACGAGGAGATGCTCAAGGACGAAGTGCGCACCGTCACA
TACCGCAACGCCATGTACCACAACAAGCATCTGTTTCAGGGCAAGACCGT
ACTGGACGTGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCTGCCAAAG
CCGGTGCTGCTCAGGTGATTGCCGTCGACTGCTCCAACATCATTGAGTTT
GCCCGCCAAGTGGTCATTGACAACAATCTGCAGGATGTAATCACGGTTGT
CAAGGGCAAGATTGAGGAGATTGAGCTTCCAAATGGTATTGAGGGAGTGG
ACATTATTATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGAATCCATG
CTGGATACAGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGGACGGCAT
GATGTTCCCAGATAGGGGCACGCTGTATATCACGGCCATCGAGGACAGAC
AGTACAAGGACGAGAAGATCAACTGGTGGGACGATGTCTACGGCTTCGAC
ATGAGCTGCATTCGTAAGGTGGCCGTGACCGAGCCACTGGTCGACGTGGT
CGATCCCAAGCAAGTGGTATCCACATCTTGCATGGTCAAGGAGGTGGATC
TGTATACCGTGCAAAAGGCCGATCTTAACTTCTCGTCCAAGTTCAGCCTA
TGCATCAAGCGCAACGACTTCGTGCAGGCATTAGTCACCTACTTTAATAT
AGAGTTCACCAAGTGCCACAAGCGTCTTGGGTTCAGTACGTCACCAGACT
CCACATACACGCATTGGAAGCAAACCGTGTTCTACCTCGATGACCACATG
ACGGCAAAGAAGAACGAGGAGATCACTGGCACGTTCCAGATGAAGCCCAA
CGAGCGGAACAACCGTGACCTGGACTTCGTCATCGACATTAATTTCAAGG
GCGAATTGTCTCAAATTCAGGAGTCGAACACATACCGCATGCGCTAGAAG
CTTTCTAGACCAT
BS08052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art1-RA | 1131 | CG6554-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art1-RA | 1528 | CG6554-RA | 113..1243 | 17..1147 | 5655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10786766..10787388 | 1147..525 | 3115 | 100 | Minus |
3R | 32079331 | 3R | 10787773..10788049 | 295..19 | 1385 | 100 | Minus |
3R | 32079331 | 3R | 10787475..10787706 | 525..294 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:14:02 has no hits.
BS08052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:33 Download gff for
BS08052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 1..1131 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:45 Download gff for
BS08052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 95..1229 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:29 Download gff for
BS08052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 113..1243 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:34 Download gff for
BS08052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 95..1229 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:21 Download gff for
BS08052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art1-RA | 113..1243 | 17..1147 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:21 Download gff for
BS08052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10786766..10787387 | 526..1147 | 100 | <- | Minus |
3R | 10787475..10787704 | 296..525 | 100 | <- | Minus |
3R | 10787773..10788050 | 17..295 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:29 Download gff for
BS08052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6613197..6613426 | 296..525 | 100 | <- | Minus |
arm_3R | 6612488..6613109 | 526..1147 | 100 | <- | Minus |
arm_3R | 6613495..6613772 | 17..295 | 99 | | Minus |
BS08052.pep Sequence
Translation from 16 to 1146
> BS08052.pep
MASTDIPMEAAVESATGITPNSNANSNNVAKKLPAEGSTGDNPNANADEM
TSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGC
GTGILSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIE
EIELPNGIEGVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDR
GTLYITAIEDRQYKDEKINWWDDVYGFDMSCIRKVAVTEPLVDVVDPKQV
VSTSCMVKEVDLYTVQKADLNFSSKFSLCIKRNDFVQALVTYFNIEFTKC
HKRLGFSTSPDSTYTHWKQTVFYLDDHMTAKKNEEITGTFQMKPNERNNR
DLDFVIDINFKGELSQIQESNTYRMR*
BS08052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art1-PA | 376 | CG6554-PA | 1..376 | 1..376 | 1981 | 100 | Plus |
Art2-PB | 355 | CG3675-PB | 10..335 | 36..362 | 768 | 46.4 | Plus |
Art2-PA | 355 | CG3675-PA | 10..335 | 36..362 | 768 | 46.4 | Plus |
Art6-PA | 341 | CG9927-PA | 19..337 | 56..373 | 705 | 40.6 | Plus |
Art3-PB | 474 | CG6563-PB | 140..464 | 31..358 | 636 | 40.4 | Plus |