Clone Sequence Records
BS08053.3prime Sequence
922 bp (873 high quality bases) assembled on 2006-01-06
> BS08053.3prime
ATGGTCTAGAAAGCTTCTAGGAAAACAATGCCTGCAGCATGATATAGACT
AATAGCACAGTCGCCAGAATAAATATTCCCAGGAGTGGGGCACCCCACAC
CAGTTGTCCAAAGATCATCGAACAACCGATCGTTGTGAGAGCGGGTATAG
AGCCCAATGGTCGTAGGCAAACTCGCGGAGGAACCAGATTTTCACATATT
TCAACGTGGCCGGAGCTTTTGTCAAACCACTGTTCCGTCATCGGAGCGTA
CAACAGTTGCCGGGCCACTTTTCCGAAGTAATCGTCGCGGACGTAGAATC
CTTGTAATTGACTACCATACTTATTGTTAATCTTTTCCGAAACGAAATGC
AGCATTCTTACCAATGCTCTAACTTCATTGGTTTGGATGGGCAGCGTGGC
GGGATCGACAGCGGCATGCAGGCTAGAAGCATTGAGCGACATTTGGTGCG
GGTTCAGCTTTGAGGTGTCCAAAGTGTCGCTGGCGTCGAAAAAGCTGAAA
TTTTGCACAGCAGGCGCAGAAGGCACAGATGGTTCCTCTGGCAGAGTTTC
ATGCATAGATAGATTCGCTTGATCAACATTAAACGTTCGACAGAATGCGT
CGATGCATTGACGCAAAACCTCCGGAATGCGACTGAACTCGCGCAGGGTC
ACTTCTTCCTGGGTGCACTCGCCAAAGATCTTCTTATAAAAGTTCTTAAG
AAATCCTTCAGACCGCTGTCTCTCCGCAATTTCATTTCGTAGCTTGGCGA
TGTCTCTGAGCACCGAGTTGCGGGCCATACTGATTAGCAACAAGAAGGTT
TCCATTTGCGTTTGCATAGTATAACTAAAAAGTTTGGCGGAGCTTATGTT
AACAGCTTGATTCCACGGAGTGCCTGGAGAAACGGATTTGTTCATTATGT
TGACTTGGCGCTGTGGCGAGTC
BS08053.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-PA | 2304 | CG6962-RA | 1399..2304 | 922..17 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2492 | CG6962-RA | 1509..2414 | 922..17 | 4530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11880453..11880767 | 576..890 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 11879780..11880084 | 17..321 | 1525 | 100 | Plus |
| 3R | 32079331 | 3R | 11880138..11880395 | 320..577 | 1290 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:42:49 has no hits.
BS08053.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:07 Download gff for
BS08053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1399..2304 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:46 Download gff for
BS08053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1399..2304 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:16:55 Download gff for
BS08053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 1509..2417 | 10..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:14 Download gff for
BS08053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 1509..2417 | 10..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:14 Download gff for
BS08053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11879777..11880082 | 10..319 | 98 | <- | Plus |
| 3R | 11880138..11880395 | 320..577 | 100 | <- | Plus |
| 3R | 11880455..11880767 | 578..890 | 100 | <- | Plus |
| 3R | 11880828..11880859 | 891..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:16:55 Download gff for
BS08053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7705860..7706117 | 320..577 | 100 | <- | Plus |
| arm_3R | 7705499..7705804 | 10..319 | 98 | <- | Plus |
| arm_3R | 7706177..7706489 | 578..890 | 100 | <- | Plus |
| arm_3R | 7706550..7706581 | 891..922 | 100 | | Plus |
BS08053.5prime Sequence
826 bp (825 high quality bases) assembled on 2006-01-06
> BS08053.5prime
GAAGTTATCAGTCGACATGTCGCAGACCATGCCGCCAGAAAACCTAAGCA
GCCGCCTGTTGACGGTGCTCAGTTTGCCTCTATTCGAGCGCGTGCACGAG
CTGAGCATCCTGTTCGATCGGTGCTCCTTGCGCCAAGTGCAGGAGATCTT
CCCCCACGTTGTGCACTCCATCTTCGGGATAGATGGCAATCCGTTGGGCT
GGGGCCTGCGGACCACGACGCTTGAAAACAATCCGGTGCAATTCCAAACG
CTGCACCAGTTCTTCGGCGTCTGTGGTCCCCTGATGCATGTTTGCCACCG
TCTGCTCGTCGACCAGTACAAATTCGAACTAGACATCAATCTGCTGCCGG
CGAAATTCGTTAGCCTGCTGCAGAATGGTCAGAATCCTAGTTTCTATGCA
GAACTCATCAATGTGGAGACGATGATGCACCAGGTGTCCACGCTCTCGCT
CAACGCCTTCGACTTCTATGTGATTCACTTTGTGCTATATGCCCTGCAGC
CACTACACTCTATCAATCCCATAGCCATGCAAATCCACAATGTGCGCAGC
AAAACGGTCTACTTGAAACTGGTGGCCGAGTACCTTAACAACTTCCTGCC
GCTGCTTCCCGATGCACGCATAGAACCGGTGCACTTTAGCAGCGGGGTTA
AGGCGCCACAGCCATTGCCAGCCCAAGCATTACAGCCCCAAAGACAACCG
CGCTACATTAAGATTCCCAGCTCCTATCGCAATGGTGGAAACGTGTCGGG
CGGCGGTGGCATTCCCAGTGCAAGCGTTGGCGTCGGGAACATATCACCAC
AGTCCAACAGCCCAAGTGCCAGCTCC
BS08053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-PA | 2304 | CG6962-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2492 | CG6962-RA | 110..920 | 16..826 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11881505..11881982 | 826..349 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 11882035..11882335 | 350..50 | 1505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:01:35 has no hits.
BS08053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:08 Download gff for
BS08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:48 Download gff for
BS08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:31:00 Download gff for
BS08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 106..920 | 12..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:24 Download gff for
BS08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 106..920 | 12..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:24 Download gff for
BS08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11881505..11881981 | 350..826 | 100 | <- | Minus |
| 3R | 11882036..11882335 | 50..349 | 100 | <- | Minus |
| 3R | 11882392..11882429 | 12..49 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:31:00 Download gff for
BS08053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7707227..7707703 | 350..826 | 100 | <- | Minus |
| arm_3R | 7707758..7708057 | 50..349 | 100 | <- | Minus |
| arm_3R | 7708114..7708151 | 12..49 | 94 | | Minus |
BS08053.complete Sequence
2336 bp assembled on 2008-01-03
GenBank Submission: FJ636079
> BS08053.complete
GAAGTTATCAGTCGACATGTCGCAGACCATGCCGCCAGAAAACCTAAGCA
GCCGCCTGTTGACGGTGCTCAGTTTGCCTCTATTCGAGCGCGTGCACGAG
CTGAGCATCCTGTTCGATCGGTGCTCCTTGCGCCAAGTGCAGGAGATCTT
CCCCCACGTTGTGCACTCCATCTTCGGGATAGATGGCAATCCGTTGGGCT
GGGGCCTGCGGACCACGACGCTTGAAAACAATCCGGTGCAATTCCAAACG
CTGCACCAGTTCTTCGGCGTCTGTGGTCCCCTGATGCATGTTTGCCACCG
TCTGCTCGTCGACCAGTACAAATTCGAACTAGACATCAATCTGCTGCCGG
CGAAATTCGTTAGCCTGCTGCAGAATGGTCAGAATCCTAGTTTCTATGCA
GAACTCATCAATGTGGAGACGATGATGCACCAGGTGTCCACGCTCTCGCT
CAACGCCTTCGACTTCTATGTGATTCACTTTGTGCTATATGCCCTGCAGC
CACTACACTCTATCAATCCCATAGCCATGCAAATCCACAATGTGCGCAGC
AAAACGGTCTACTTGAAACTGGTGGCCGAGTACCTTAACAACTTCCTGCC
GCTGCTTCCCGATGCACGCATAGAACCGGTGCACTTTAGCAGCGGGGTTA
AGGCGCCACAGCCATTGCCAGCCCAAGCATTACAGCCCCAAAGACAACCG
CGCTACATTAAGATTCCCAGCTCCTATCGCAATGGTGGAAACGTGTCGGG
CGGCGGTGGCATTCCCAGTGCAAGCGTTGGCGTCGGGAACATATCACCAC
AGTCCAACAGCCCAAGTGCCAGCTCCAACCGGGCTTACGCATGGCGATCT
GAAAGTGTACTCCACTTTTTCGTAGACATCTGGCTGCGTTACGACATCGA
GTCGGAGCATCATTTGCCCAGCAGCGATTTTGTGCGCGGCGTACGCACCT
TGGTCAAGCAGGTGCACTTTTTTGCAAATGGCGCTCAGCACGACCACAGT
TCGCTGTGCGCGCTGCGTAAGGTATCGTTGAGTATGGTTAAGGCAAGAAT
CTACGCCTTTATTGTTGGTTTGATCGATCGTTGGCCTCTGGACAGCTCGT
TGATGGTGGTGCTGGAGCTTTGGCTCAGTTACATTCAGCCATGGAGATAC
ACCATAGCGTCGCTGAACAATAAAACACCTAGTCTTTCCTACAGGCCGCC
CATTTCGTCCTGCTTCGATGGCTTTATTATCGACAACCTTATTATGTACA
CTCACATATTTATGCAGCTACTGCCACACTTTGGGCGGTTGGACTACACT
GTGTATAGGAACGCATTTATGCTGTACCGTCTGGCCACAATCTTCTCTCA
ACATGATTTAGTAGATAAACTTCAGCGTTTTGAGGCTATACATGCAGGCA
ATTCTTTTGGCTTTGACTCGCCACAGCGCCAAGTCAACATAATGAACAAA
TCCGTTTCTCCAGGCACTCCGTGGAATCAAGCTGTTAACATAAGCTCCGC
CAAACTTTTTAGTTATACTATGCAAACGCAAATGGAAACCTTCTTGTTGC
TAATCAGTATGGCCCGCAACTCGGTGCTCAGAGACATCGCCAAGCTACGA
AATGAAATTGCGGAGAGACAGCGGTCTGAAGGATTTCTTAAGAACTTTTA
TAAGAAGATCTTTGGCGAGTGCACCCAGGAAGAAGTGACCCTGCGCGAGT
TCAGTCGCATTCCGGAGGTTTTGCGTCAATGCATCGACGCATTCTGTCGA
ACGTTTAATGTTGATCAAGCGAATCTATCTATGCATGAAACTCTGCCAGA
GGAACCATCTGTGCCTTCTGCGCCTGCTGTGCAAAATTTCAGCTTTTTCG
ACGCCAGCGACACTTTGGACACCTCAAAGCTGAACCCGCACCAAATGTCG
CTCAATGCTTCTAGCCTGCATGCCGCTGTCGATCCCGCCACGCTGCCCAT
CCAAACCAATGAAGTTAGAGCATTGGTAAGAATGCTGCATTTCGTTTCGG
AAAAGATTAACAATAAGTATGGTAGTCAATTACAAGGATTCTACGTCCGC
GACGATTACTTCGGAAAAGTGGCCCGGCAACTGTTGTACGCTCCGATGAC
GGAACAGTGGTTTGACAAAAGCTCCGGCCACGTTGAAATATGTGAAAATC
TGGTTCCTCCGCGAGTTTGCCTACGACCATTGGGCTCTATACCCGCTCTC
ACAACGATCGGTTGTTCGATGATCTTTGGACAACTGGTGTGGGGTGCCCC
ACTCCTGGGAATATTTATTCTGGCGACTGTGCTATTAGTCTATATCATGC
TGCAGGCATTGTTTTCCTAGAAGCTTTCTAGACCAT
BS08053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2304 | CG6962-PA | 1..2304 | 17..2320 | 11520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-RA | 2492 | CG6962-RA | 110..2414 | 16..2320 | 11525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11881155..11881982 | 1176..349 | 4140 | 100 | Minus |
| 3R | 32079331 | 3R | 11880453..11880767 | 1761..1447 | 1575 | 100 | Minus |
| 3R | 32079331 | 3R | 11879780..11880084 | 2320..2016 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 11882035..11882335 | 350..50 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 11880828..11881097 | 1446..1177 | 1350 | 100 | Minus |
| 3R | 32079331 | 3R | 11880138..11880395 | 2017..1760 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:16:23 has no hits.
BS08053.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:53 Download gff for
BS08053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 1..2304 | 17..2320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:47 Download gff for
BS08053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 112..2415 | 17..2320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:25 Download gff for
BS08053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 111..2414 | 17..2320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:54 Download gff for
BS08053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 107..2418 | 12..2327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:35 Download gff for
BS08053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6962-RA | 111..2414 | 17..2320 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:35 Download gff for
BS08053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11879780..11880082 | 2018..2320 | 100 | <- | Minus |
| 3R | 11880138..11880395 | 1760..2017 | 100 | <- | Minus |
| 3R | 11880455..11880767 | 1447..1759 | 100 | <- | Minus |
| 3R | 11880828..11881097 | 1177..1446 | 100 | <- | Minus |
| 3R | 11881155..11881981 | 350..1176 | 100 | <- | Minus |
| 3R | 11882036..11882335 | 50..349 | 100 | <- | Minus |
| 3R | 11882392..11882424 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:25 Download gff for
BS08053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7707758..7708057 | 50..349 | 100 | <- | Minus |
| arm_3R | 7708114..7708146 | 17..49 | 100 | | Minus |
| arm_3R | 7706877..7707703 | 350..1176 | 100 | <- | Minus |
| arm_3R | 7705502..7705804 | 2018..2320 | 100 | <- | Minus |
| arm_3R | 7705860..7706117 | 1760..2017 | 100 | <- | Minus |
| arm_3R | 7706177..7706489 | 1447..1759 | 100 | <- | Minus |
| arm_3R | 7706550..7706819 | 1177..1446 | 100 | <- | Minus |
BS08053.pep Sequence
Translation from 16 to 2319
> BS08053.pep
MSQTMPPENLSSRLLTVLSLPLFERVHELSILFDRCSLRQVQEIFPHVVH
SIFGIDGNPLGWGLRTTTLENNPVQFQTLHQFFGVCGPLMHVCHRLLVDQ
YKFELDINLLPAKFVSLLQNGQNPSFYAELINVETMMHQVSTLSLNAFDF
YVIHFVLYALQPLHSINPIAMQIHNVRSKTVYLKLVAEYLNNFLPLLPDA
RIEPVHFSSGVKAPQPLPAQALQPQRQPRYIKIPSSYRNGGNVSGGGGIP
SASVGVGNISPQSNSPSASSNRAYAWRSESVLHFFVDIWLRYDIESEHHL
PSSDFVRGVRTLVKQVHFFANGAQHDHSSLCALRKVSLSMVKARIYAFIV
GLIDRWPLDSSLMVVLELWLSYIQPWRYTIASLNNKTPSLSYRPPISSCF
DGFIIDNLIMYTHIFMQLLPHFGRLDYTVYRNAFMLYRLATIFSQHDLVD
KLQRFEAIHAGNSFGFDSPQRQVNIMNKSVSPGTPWNQAVNISSAKLFSY
TMQTQMETFLLLISMARNSVLRDIAKLRNEIAERQRSEGFLKNFYKKIFG
ECTQEEVTLREFSRIPEVLRQCIDAFCRTFNVDQANLSMHETLPEEPSVP
SAPAVQNFSFFDASDTLDTSKLNPHQMSLNASSLHAAVDPATLPIQTNEV
RALVRMLHFVSEKINNKYGSQLQGFYVRDDYFGKVARQLLYAPMTEQWFD
KSSGHVEICENLVPPRVCLRPLGSIPALTTIGCSMIFGQLVWGAPLLGIF
ILATVLLVYIMLQALFS*
BS08053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6962-PA | 767 | CG6962-PA | 1..767 | 1..767 | 3997 | 100 | Plus |
