Clone Sequence Records
BS08054.3prime Sequence
944 bp (853 high quality bases) assembled on 2006-01-06
> BS08054.3prime
ATGGTCTAGAAAGCTTTTAGTGCATAGGCGAGGCCAGTCGCGTAGTTGTC
TGCATGCTGTTGCTGCGGTTGTTCGACTTGAGCCGCAGCTCGTTGACGAG
CTTAAAGAGCTGGTCCTGCTTGGATAGCAGTTCGCGGGTTCGCTGGCAGC
CATGCTGAGGAGCGCACAGACCAGGATTCCAGCGACAGTATAGGCCCTTC
CACAAGCGGACCGATCTCACGCTGGCAATCGGACGCAGCACTAGCTCGGC
GCCGTGCGTGAACGAGGGAAAGAGTGGATTCAAATACTGGTCCAGCGACG
AGTTGATGTGCGTCCACAGGGATGTTGTCTTGTGCTTGAGATCTTCGGCC
ACACGCTCGGCCTCCGTGTTGCAGAGGAAGGTGCCGAAGCGGCACGAGTA
CAGATGATCCACGATGGTTATCAGGAAGTGCTCGTTGAACTCAAATGCGT
TGTTGAACTGCTGGCTAACCTGCCAGACGCTATCGATAAATTGCAGGAAC
ACCGGAGATCTGTCTGCATCCGAGTGCTTGTTGTCGCCGTGACCAATGCG
TTGTTGGAACTTGTGGCCAAAGGAGAGCCACTCCTTCTCAATGAGAACCT
CGAAACCGCGCACTGTGCGATAGTGCGGATCGAGCAGCAACATGGAAAGA
GCAGTCAGCTGGGCTGTGCGATCCCAGCCGTCGGAGCAGTGAACTACGAC
GGAGGTGCTCATGGTCTCCACCTTGTCAACAATCCTAACGGCGCCGGCCA
GGATGCACCTAATGTGCTTTAGCCACAGTGTGTTGTCAATAGCCGTCTGC
CACTTTGAGTCGTCGGTGGTGGGGAAGCAAGCCTCCTTCACTTTGCGTAG
GCTCTCCCGCATCACGTGGATGTTGTGTATGTCGAGGAAGTTGATTTCAC
GTTCTTGTACGCGTCCTCTGACTCGTAGCCGCCGCCCTTGGCCT
BS08054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9115-PA | 1860 | myotubularin-RA | 979..1860 | 898..17 | 4410 | 100 | Minus |
| CG9115-PA | 1860 | myotubularin-RA | 932..978 | 944..898 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 2230 | CG9115-RB | 1136..2064 | 944..17 | 4620 | 99.9 | Minus |
| mtm-RA | 2067 | CG9115-RA | 1038..1966 | 944..17 | 4620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6035278..6035880 | 343..944 | 2965 | 99.8 | Plus |
| 2L | 23513712 | 2L | 6034897..6035224 | 17..344 | 1640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 11:35:02 has no hits.
BS08054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:09 Download gff for
BS08054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 932..1860 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:50 Download gff for
BS08054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 932..1860 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:28 Download gff for
BS08054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 1058..1989 | 14..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:34 Download gff for
BS08054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 1038..1969 | 14..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:34 Download gff for
BS08054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6034894..6035222 | 14..342 | 99 | <- | Plus |
| 2L | 6035278..6035880 | 343..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:28 Download gff for
BS08054.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6034894..6035222 | 14..342 | 99 | <- | Plus |
| arm_2L | 6035278..6035880 | 343..944 | 99 | | Plus |
BS08054.5prime Sequence
864 bp (807 high quality bases) assembled on 2006-01-06
> BS08054.5prime
GAAGTTATCAGTCGACATGGATCCCTCCGCGAGCCTGGCCGACAAGTTGG
CCTCCAAGACTGCCAGCAGCAACTCTCTGGACAGCAGCTCCAAGTCCAGT
TCGCTGGGCTCCAAGCACGGTGGCGGAGAAAACGGCATTCTGCGGGACAC
GCCCTTCGGCTATCTGGAGGGCGAAGAGGACCAGGACCAGAAGAACGACG
TGACCTACGTGTGTCCGTACCGCGGCCCCGTCTTCGGCGCTCTTACCATA
ACCAACTACCGTCTGTACTTCCGGTCGCTTCCCCTGCGGGATCAGGAGCC
GCCCGTCGTCGTCGACGTGCCTCTGGGCGTGATCGCGCGTGTGGAGAAGA
TTGGAGGTGCCACGTCTCGCGGTGAGAACTCGTACGGCATCGAGATTTTC
TGCAAGGACATGCGAAACCTGCGATTCGCCCACAAGCAGCAGAATCATTC
GCGGAGGACGGTGTTTGAGAAACTGCAGGCCAACGCCTTTCCGCTCTCGT
ACAGTGGGCGCCTCTTTGCATTCGCCCACGCCGCGGCCAACTCTGTGAAC
GGTAACGGAGGCTGGGACGGCTGGGCGGTATATGAACCGCTGGCGGAGCT
GCGCCGCTTGGGCGTTCCCAACGATATGTGGCGGGCGACCAAGCTAAACG
AGTCCTACGCAATTTGCGACAGCTATCCGGCCGTGTGGGCTGTGCCCAAA
GCGGCCTCCGATGATTTCCTGAGGCGCGTGGCACAGTTCCGATCGCGCTG
CCGCCTGCCGGTTTTGTCCTGGATGAACCCACGGACTCAAGCGACCATTA
CAAGGTGTTTCCAGCCGCTGGTGGGTGTAAGTGGCAAGCGAAATTCCGAC
GATGAAGCATACCT
BS08054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9115-PA | 1860 | myotubularin-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 2230 | CG9115-RB | 205..1052 | 17..864 | 4225 | 99.9 | Plus |
| mtm-RA | 2067 | CG9115-RA | 107..954 | 17..864 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6035964..6036811 | 864..17 | 4225 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:24:04 has no hits.
BS08054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:10 Download gff for
BS08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:51 Download gff for
BS08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9115-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:48 Download gff for
BS08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 118..974 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:56 Download gff for
BS08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 98..954 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:56 Download gff for
BS08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6035964..6036820 | 9..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:48 Download gff for
BS08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6035964..6036820 | 9..864 | 99 | | Minus |
BS08054.complete Sequence
1892 bp assembled on 2008-01-03
GenBank Submission: FJ636080
> BS08054.complete
GAAGTTATCAGTCGACATGGATCCCTCCGCGAGCCTGGCCGACAAGTTGG
CCTCCAAGACTGCCAGCAGCAACTCTCTGGACAGCAGCTCCAAGTCCAGT
TCGCTGGGCTCCAAGCACGGTGGCGGAGAAAACGGCATTCTGCGGGACAC
GCCCTTCGGCTATCTGGAGGGCGAAGAGGACCAGGACCAGAAGAACGACG
TGACCTACGTGTGTCCGTACCGCGGCCCCGTCTTCGGCGCTCTTACCATA
ACCAACTACCGTCTGTACTTCCGGTCGCTTCCCCTGCGGGATCAGGAGCC
GCCCGTCGTCGTCGACGTGCCTCTGGGCGTGATCGCGCGTGTGGAGAAGA
TTGGAGGTGCCACGTCTCGCGGTGAGAACTCGTACGGCATCGAGATTTTC
TGCAAGGACATGCGAAACCTGCGATTCGCCCACAAGCAGCAGAATCATTC
GCGGAGGACGGTGTTTGAGAAACTGCAGGCCAACGCCTTTCCGCTCTCGT
ACAGTGGGCGCCTCTTTGCATTCGCCCACGCCGCGGCCAACTCTGTGAAC
GGTAACGGAGGCTGGGACGGCTGGGCGGTATATGAACCGCTGGCGGAGCT
GCGCCGCTTGGGCGTTCCCAACGATATGTGGCGGGCGACCAAGCTAAACG
AGTCCTACGCAATTTGCGACAGCTATCCGGCCGTGTGGGCTGTGCCCAAA
GCGGCCTCCGATGATTTCCTGAGGCGCGTGGCACAGTTCCGATCGCGCTG
CCGCCTGCCGGTTTTGTCCTGGATGAACCCACGGACTCAAGCGACCATTA
CAAGGTGTTCCCAGCCGCTGGTGGGTGTAAGTGGCAAGCGAAATTCCGAC
GATGAAGCATACCTAAGCTTTATCATGGAGGCGAACGCCCAGTCAGACAA
GTTGACCATCATGGATGCGCGACCAAGCGCCAATGCGATTGCTAACAAGG
CCAAGGGCGGCGGCTACGAGTCAGAGGACGCGTACAAGAACGTGGAAATC
AACTTCCTCGACATACACAACATCCACGTGATGCGGGAGAGCCTACGCAA
AGTGAAGGAGGCTTGCTTCCCCACCACCGACGACTCAAAGTGGCAGACGG
CTATTGACAACACACTGTGGCTAAAGCACATTAGGTGCATCCTGGCCGGC
GCCGTTAGGATTGTTGACAAGGTGGAGACCATGAGCACCTCCGTCGTAGT
TCACTGCTCCGACGGCTGGGATCGCACAGCCCAGCTGACTGCTCTTTCCA
TGTTGCTGCTCGATCCGCACTATCGCACAGTGCGCGGTTTCGAGGTTCTC
ATTGAGAAGGAGTGGCTCTCCTTTGGCCACAAGTTCCAACAACGCATTGG
TCACGGCGACAACAAGCACTCGGATGCAGACAGATCTCCGGTGTTCCTGC
AATTTATCGATAGCGTCTGGCAGGTTAGCCAGCAGTTCAACAACGCATTT
GAGTTCAACGAGCACTTCCTGATAACCATCGTGGATCATCTGTACTCGTG
CCGCTTCGGCACCTTCCTCTGCAACACGGAGGCCGAGCGTGTGGCCGAAG
ATCTCAAGCACAAGACAACATCCCTGTGGACGCACATCAACTCGTCGCTG
GACCAGTATTTGAATCCACTCTTTCCCTCGTTCACGCACGGCGCCGAGCT
AGTGCTGCGTCCGATTGCCAGCGTGAGATCGGTCCGCTTGTGGAAGGGCC
TATACTGTCGCTGGAATCCTGGTCTGTGCGCTCCTCAGCATGGCTGCCAG
CGAACCCGCGAACTGCTATCCAAGCAGGACCAGCTCTTTAAGCTCGTCAA
CGAGCTGCGGCTCAAGTCGAACAACCGCAGCAACAGCATGCAGACAACTA
CGCGACTGGCCTCGCCTATGCACTAAAAGCTTTCTAGACCAT
BS08054.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 1860 | CG9115-PB | 1..1860 | 17..1876 | 9300 | 100 | Plus |
| mtm-RA | 1860 | CG9115-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-RB | 2230 | CG9115-RB | 205..2064 | 17..1876 | 9300 | 100 | Plus |
| mtm-RA | 2067 | CG9115-RA | 107..1966 | 17..1876 | 9300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6035278..6036811 | 1550..17 | 7670 | 100 | Minus |
| 2L | 23513712 | 2L | 6034897..6035224 | 1876..1549 | 1640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:06:22 has no hits.
BS08054.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:55 Download gff for
BS08054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 1..1860 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:35 Download gff for
BS08054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 110..1967 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:07 Download gff for
BS08054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 127..1984 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:55 Download gff for
BS08054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 101..1972 | 9..1879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:36 Download gff for
BS08054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtm-RA | 107..1964 | 17..1874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:36 Download gff for
BS08054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6034899..6035222 | 1551..1874 | 100 | <- | Minus |
| 2L | 6035278..6036811 | 17..1550 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:07 Download gff for
BS08054.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6035278..6036811 | 17..1550 | 100 | | Minus |
| arm_2L | 6034899..6035222 | 1551..1874 | 100 | <- | Minus |
BS08054.pep Sequence
Translation from 16 to 1875
> BS08054.pep
MDPSASLADKLASKTASSNSLDSSSKSSSLGSKHGGGENGILRDTPFGYL
EGEEDQDQKNDVTYVCPYRGPVFGALTITNYRLYFRSLPLRDQEPPVVVD
VPLGVIARVEKIGGATSRGENSYGIEIFCKDMRNLRFAHKQQNHSRRTVF
EKLQANAFPLSYSGRLFAFAHAAANSVNGNGGWDGWAVYEPLAELRRLGV
PNDMWRATKLNESYAICDSYPAVWAVPKAASDDFLRRVAQFRSRCRLPVL
SWMNPRTQATITRCSQPLVGVSGKRNSDDEAYLSFIMEANAQSDKLTIMD
ARPSANAIANKAKGGGYESEDAYKNVEINFLDIHNIHVMRESLRKVKEAC
FPTTDDSKWQTAIDNTLWLKHIRCILAGAVRIVDKVETMSTSVVVHCSDG
WDRTAQLTALSMLLLDPHYRTVRGFEVLIEKEWLSFGHKFQQRIGHGDNK
HSDADRSPVFLQFIDSVWQVSQQFNNAFEFNEHFLITIVDHLYSCRFGTF
LCNTEAERVAEDLKHKTTSLWTHINSSLDQYLNPLFPSFTHGAELVLRPI
ASVRSVRLWKGLYCRWNPGLCAPQHGCQRTRELLSKQDQLFKLVNELRLK
SNNRSNSMQTTTRLASPMH*
BS08054.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtm-PB | 619 | CG9115-PB | 1..619 | 1..619 | 3277 | 100 | Plus |
| mtm-PA | 619 | CG9115-PA | 1..619 | 1..619 | 3277 | 100 | Plus |
| CG3530-PC | 639 | CG3530-PC | 3..452 | 106..570 | 857 | 40.3 | Plus |
| CG3530-PB | 689 | CG3530-PB | 53..502 | 106..570 | 857 | 40.3 | Plus |
| CG3530-PA | 761 | CG3530-PA | 125..574 | 106..570 | 857 | 40.3 | Plus |
