Clone Sequence Records
BS08055.3prime Sequence
835 bp (834 high quality bases) assembled on 2006-01-06
> BS08055.3prime
ATGGTCTAGAAAGCTTTTAGTAATCCGCAGCGGTGTTAGATAGGTAGTCG
CGACGTCCTATGTTTGAAGCTTGCTTGTTCTGAACAGCCTCAAGTTTTGG
GCACTCCGTGATGCGATGGCCCAGACCACCACAGTAGGTGCAGCCATGCG
AGTCACCCAGGTCCAGGTGCTGGTGTTCGGTCTCAGGTGCCAGTTCGTCC
AAGAAGTCCGGGACCTCTTGCTTGCCCTCGATTAGCAGGTGCTTCAGGTC
GAGCAGAACCGACTGCTCGGTAGTCTTGTTTATCAGCGTCGTAGCCAATC
CCTTAGTGTTGGAACGACCTGTGCGGCCAATACGATGCACATAGTTTTCA
ATATCGTCCGGCATGTCGTAGTTAATAACGTGTTGCACGTTAGGGAAGTC
CAGGCCCTTCGATGCCACGTCGGTGGCCACCAGCACATCTTTTTTGCCCA
CGCGGTAAGCATCGACTGCCCGCGATCGTTCTTCCTGATCCTTTCCGCCG
TGAATAGCCACCGCCTCCACGCCTTTCAACAGCAGATACTCATGTATGCA
GTCTACATCCTGCTTCTTCTCAGCAAAAATGAGCACGGGCGGCGCGGTCT
TCTGTAGGCAGTCCAGCAAATATACCACCTTTGCCTCTTGCTTAACGTAC
TCAACCTGTTGGGTGACGTTCATTGACGCAGCACCTGCGCGACCCACATT
TATTGTGACAGGCTTCACGAGAGCTGATCGAGCAAAGTTCTGGATCTTTT
TTGGCATGGTGGCAGAGAATAAAAGTGTCTGTCGCTGGCCTTTGAAGAAA
GAGAATATCGTACGAACGTCCTCTTCAAATCCCAT
BS08055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14637-PA | 1860 | abs-RA | 1042..1860 | 835..17 | 4095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1995 | CG14637-RA | 1124..1943 | 835..16 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4234170..4234989 | 835..16 | 4100 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:30:00 has no hits.
BS08055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:11 Download gff for
BS08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-PA | 1042..1860 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:52 Download gff for
BS08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14637-PA | 1042..1860 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:47:02 Download gff for
BS08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 1124..1943 | 16..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:30 Download gff for
BS08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 1124..1943 | 16..835 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:30 Download gff for
BS08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4234170..4234989 | 16..835 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:47:02 Download gff for
BS08055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 59892..60711 | 16..835 | 100 | | Minus |
BS08055.5prime Sequence
829 bp (725 high quality bases) assembled on 2006-01-06
> BS08055.5prime
GAAGTTATCAGTCGACATGGCGCACGTAAAGCGGTATCGGAGGTCGTCTA
AGTCCTCGGAGGAAGGCGACCTGGACAACGAGGACTACGTGCCATACGTA
CCGGTGAAGGAGCGGAAGAAGCAGCACATGATAAAGCTGGGCAGGATCGT
GCAACTGGTTTCGGAAACGGCCCAGCCCAAGTCGTCAAGCGAGAATGAGA
ATGAAGACGACTCGCAGGGTGCGCACGATGTCGAGACCTGGGGACGCAAG
TACAACATTAGTCTGCTGGACCAGCACACAGAACTGAAGAAAATTGCCGA
GGCCAAAAAGTTGAGTGCCGTCGAAAAGCAGCTGCGAGAGGAGGAAAAGA
TTATGGAGAGCATTGCTCAGCAGAAGGCCCTTATGGGTGTGGCAGAGTTG
GCGAAGGGGATTCAGTACGAGCAGCCTATTAAAACAGCTTGGAAACCGCC
GCGTTACATTCGGGAAATGTCGGAGGAAGAGCGCGAGGCCGTTCGCCACG
AGTTGAGGATCCTAGTGGAGGGAGAAACCCCCAGCCCGCCAATTCGCAGC
TTCCGGGAAATGAAGTTCCCTAAAGGTATACTTAACGGCTTAGCGGCCAA
AGGCATTAAGAACCCGACCCCAATCCAAGTGCAAGGCCTGCCCACTGTAC
TAGCCGGCCGCGACCTAATTGGAATAGCCTTCACTGGGGTCTGGAAAAAC
GCTTGTCTTCGTGCTGCCAGTCATCATGGTTTGCCCTGGAACAGGAGTAT
AGTCTGCCTTTTGAGCGTAACGAGGGCCCCTACGGCCTGATCATTTGCCC
GTCCCGCGAACTGGCCAAGCAAACACACG
BS08055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14637-PA | 1860 | abs-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
| CG14637-PA | 1860 | abs-RA | 711..811 | 729..829 | 505 | 100 | Plus |
| CG14637-PA | 1860 | abs-RA | 670..711 | 687..728 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1995 | CG14637-RA | 83..893 | 17..829 | 4015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4233129..4233939 | 17..829 | 3965 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:11:31 has no hits.
BS08055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:12 Download gff for
BS08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-PA | 1..811 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:28:54 Download gff for
BS08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14637-PA | 1..811 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:14 Download gff for
BS08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..893 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:05 Download gff for
BS08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..893 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:05 Download gff for
BS08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4233129..4233939 | 17..829 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:14 Download gff for
BS08055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 58851..59661 | 17..829 | 99 | | Plus |
BS08055.complete Sequence
1892 bp assembled on 2008-01-03
GenBank Submission: FJ636081
> BS08055.complete
GAAGTTATCAGTCGACATGGCGCACGTAAAGCGGTATCGGAGGTCGTCTA
AGTCCTCGGAGGAAGGCGACCTGGACAACGAGGACTACGTGCCATACGTA
CCGGTGAAGGAGCGGAAGAAGCAGCACATGATAAAGCTGGGCAGGATCGT
GCAACTGGTTTCGGAAACGGCCCAGCCCAAGTCGTCAAGCGAGAATGAGA
ATGAAGACGACTCGCAGGGTGCGCACGATGTCGAGACCTGGGGACGCAAG
TACAACATTAGTCTGCTGGACCAGCACACAGAACTGAAGAAAATTGCCGA
GGCCAAAAAGTTGAGTGCCGTCGAAAAGCAGCTGCGAGAGGAGGAAAAGA
TTATGGAGAGCATTGCTCAGCAGAAGGCCCTTATGGGTGTGGCAGAGTTG
GCGAAGGGGATTCAGTACGAGCAGCCTATTAAAACAGCTTGGAAACCGCC
GCGTTACATTCGGGAAATGTCGGAGGAAGAGCGCGAGGCCGTTCGCCACG
AGTTGAGGATCCTAGTGGAGGGAGAAACCCCCAGCCCGCCAATTCGCAGC
TTCCGGGAAATGAAGTTCCCTAAAGGTATACTTAACGGCTTAGCGGCCAA
AGGCATTAAGAACCCGACCCCAATCCAAGTGCAAGGCCTGCCCACTGTAC
TAGCCGGCCGCGACCTAATTGGAATAGCCTTCACTGGGTCTGGAAAAACG
CTTGTCTTCGTGCTGCCAGTCATCATGTTTGCCCTGGAACAGGAGTATAG
TCTGCCTTTTGAGCGTAACGAGGGCCCCTACGGCCTGATCATTTGCCCGT
CCCGCGAACTGGCCAAGCAAACACACGAGATAATTCAACACTACAGCAAG
CACCTCCAGGCATGCGGAATGCCTGAGATTCGTTCCTGCCTGGCCATGGG
TGGTTTGCCGGTCAGCGAGGCCCTTGACGTCATCTCACGCGGCGTACATA
TTGTGGTGGCGACCCCTGGTCGTCTAATGGATATGCTGGACAAGAAGATC
CTTACGCTGGACATGTGCCGGTACTTGTGCATGGACGAGGCTGACCGCAT
GATTGACATGGGATTTGAAGAGGACGTTCGTACGATATTCTCTTTCTTCA
AAGGCCAGCGACAGACACTTTTATTCTCTGCCACCATGCCAAAAAAGATC
CAGAACTTTGCTCGATCAGCTCTCGTGAAGCCTGTCACAATAAATGTGGG
TCGCGCAGGTGCTGCGTCAATGAACGTCACCCAACAGGTTGAGTACGTTA
AGCAAGAGGCAAAGGTGGTATATTTGCTGGACTGCCTACAGAAGACCGCG
CCGCCCGTGCTCATTTTTGCTGAGAAGAAGCAGGATGTAGACTGCATACA
TGAGTATCTGCTGTTGAAAGGCGTGGAGGCGGTGGCTATTCACGGCGGAA
AGGATCAGGAAGAACGATCGCGGGCAGTCGATGCTTACCGCGTGGGCAAA
AAAGATGTGCTGGTGGCCACCGACGTGGCATCGAAGGGCCTGGACTTCCC
TAACGTGCAACACGTTATTAACTACGACATGCCGGACGATATTGAAAACT
ATGTGCATCGTATTGGCCGCACAGGTCGTTCCAACACTAAGGGATTGGCT
ACGACGCTGATAAACAAGACTACCGAGCAGTCGGTTCTGCTCGACCTGAA
GCACCTGCTAATCGAGGGCAAGCAAGAGGTCCCGGACTTCTTGGACGAAC
TGGCACCTGAGACCGAACACCAGCACCTGGACCTGGGTGACTCGCATGGC
TGCACCTACTGTGGTGGTCTGGGCCATCGCATCACGGAGTGCCCAAAACT
TGAGGCTGTTCAGAACAAGCAAGCTTCAAACATAGGACGTCGCGACTACC
TATCTAACACCGCTGCGGATTACTAAAAGCTTTCTAGACCAT
BS08055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1860 | CG14637-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-RA | 1995 | CG14637-RA | 83..1943 | 17..1877 | 9305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4233129..4234989 | 17..1877 | 9305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:15 has no hits.
BS08055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:56 Download gff for
BS08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 1..1860 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:43 Download gff for
BS08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 87..1944 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:51 Download gff for
BS08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..1940 | 17..1874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:56 Download gff for
BS08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 87..1947 | 17..1877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:49 Download gff for
BS08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| abs-RA | 83..1940 | 17..1874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:49 Download gff for
BS08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4233129..4234986 | 17..1874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:51 Download gff for
BS08055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 58851..60708 | 17..1874 | 100 | | Plus |
BS08055.pep Sequence
Translation from 16 to 1875
> BS08055.pep
MAHVKRYRRSSKSSEEGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSE
TAQPKSSSENENEDDSQGAHDVETWGRKYNISLLDQHTELKKIAEAKKLS
AVEKQLREEEKIMESIAQQKALMGVAELAKGIQYEQPIKTAWKPPRYIRE
MSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNP
TPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFER
NEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVS
EALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGF
EEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAA
SMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLL
KGVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHV
INYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIE
GKQEVPDFLDELAPETEHQHLDLGDSHGCTYCGGLGHRITECPKLEAVQN
KQASNIGRRDYLSNTAADY*
BS08055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| abs-PA | 619 | CG14637-PA | 1..619 | 1..619 | 3186 | 100 | Plus |
| bel-PA | 798 | CG9748-PA | 280..719 | 162..588 | 758 | 38.7 | Plus |
| bel-PB | 801 | CG9748-PB | 280..719 | 162..588 | 758 | 38.7 | Plus |
| Rm62-PH | 575 | CG10279-PH | 109..539 | 148..586 | 732 | 37.9 | Plus |
| Rm62-PD | 575 | CG10279-PD | 109..539 | 148..586 | 732 | 37.9 | Plus |
