Clone BS08059 Report

Search the DGRC for BS08059

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG1542-RA
Protein status:BS08059.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08059.3prime Sequence

953 bp (900 high quality bases) assembled on 2006-01-06

> BS08059.3prime
ATGGTCTAGAAAGCTTTTACTTTCTGCCCTTGGCCTTAATGCGTCGCGAT
TTGCCAAGCCGCTTGTTGACCGAAGCACCTGCCTTTACGCCCCGCTGGCG
CCTGGAGGACTTGTCGCCATCCAATCCCGCGGAGGAGGACTTTGTGTTCC
TCTTGAGGCCCTTCTTCTTGCCGCCGAAGCCGAACTTCTTGTTGCGCTTC
TTGCGATTCTCGGCTGACTGCTTCTGCTTGGACTCAAGCGCCTTGGCGTC
CTCCAGGAAGTCCAGGTTTTTCAGCTTGCCCTTGCGGAACTTCTTCAGTT
TGTCCAGCATGTCCTTCTTCTCGGCTTCGCGTTGGACCTTGGTCTGTTTG
GCCAGCATCTTGCCCATCTTGCGCTGCTCGCGGATCTGCTTGATGCGCTC
GGATTTCGCCTGTCCTTGCTGTTTGGCCATCAGGTTGGCGCGCACCTTCT
GCATGTGCTCGTCGGACTTGGCCATTTCAGCGAAGTAGTCATCGGGTCGA
CGAGTCTTTATGCCCAGCTCGTGAAGGCGGGGAATGGCCTCCAGAACAGC
ACTTTGCGCCTGTCGGTGGAAGAGCATCTCCCTCTTGAAGTCATTCAGGA
CGGGATCCTCCTCGGGCCGAATGTAGGGCAGCTTGGCGTTGCCCTTGAAG
AGATTGGCCCGCTTCTGCTCGTGCTTCTCCAGCTGTACAGCGAGTTCCGG
CGCCAGTGGAGCTAGTGTGTTGATCATGTCCAGGCGTTCCAGCCAAGGCA
GTTGCATCTTGATAGCCTCTGTCTTGGCCAGCAGTTTGGTCACATCGTTC
ACTTTGTCTCTCTGGCCATTGAATTCCACATTTAGGCCTGGTTTCAAGTC
GCCTCGCTCAAATGCCGCTTGCAGCTCGGCATCTGAGTTATCCCCTGAGT
CGTAGCCCGAGGCACTGTCCTCCATTCAAAGTCCGACATGTCGACTGATA
ACT

BS08059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 924 CG1542-RA 15..924 926..17 4550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 1207 CG1542-RA 84..1010 942..17 4610 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31213813..31214587 791..17 3875 100 Minus
3R 32079331 3R 31213670..31213755 876..791 430 100 Minus
3R 32079331 3R 31213541..31213609 942..875 295 98.6 Minus
Blast to na_te.dros performed on 2015-02-12 00:05:08 has no hits.

BS08059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:20 Download gff for BS08059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 1..924 17..939 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:03 Download gff for BS08059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 1..924 17..939 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:40:15 Download gff for BS08059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 74..1010 17..953 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:40 Download gff for BS08059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 74..1010 17..953 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:40 Download gff for BS08059.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31213531..31213609 875..953 93 -> Minus
3R 31213672..31213755 791..874 100 -> Minus
3R 31213814..31214587 17..790 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:40:15 Download gff for BS08059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27039253..27039331 875..953 93 -> Minus
arm_3R 27039394..27039477 791..874 100 -> Minus
arm_3R 27039536..27040309 17..790 100   Minus

BS08059.5prime Sequence

886 bp (791 high quality bases) assembled on 2006-01-06

> BS08059.5prime
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACNAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTCG

BS08059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 924 CG1542-RA 1..870 17..886 4331 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 1207 CG1542-RA 84..956 14..886 4354 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31213813..31214533 166..886 3594 99.9 Plus
3R 32079331 3R 31213670..31213755 81..166 430 100 Plus
3R 32079331 3R 31213541..31213609 14..82 345 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:00:22 has no hits.

BS08059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:21 Download gff for BS08059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:04 Download gff for BS08059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:29 Download gff for BS08059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 74..956 3..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:24 Download gff for BS08059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 74..956 3..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:24 Download gff for BS08059.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31213531..31213609 3..82 95 -> Plus
3R 31213672..31213755 83..166 100 -> Plus
3R 31213814..31214533 167..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:29 Download gff for BS08059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27039253..27039331 3..82 95 -> Plus
arm_3R 27039394..27039477 83..166 100 -> Plus
arm_3R 27039536..27040255 167..886 99   Plus

BS08059.complete Sequence

956 bp (956 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636082

> BS08059.complete
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTCGGTCAACAAGCGGCT
TGGCAAATCGCGACGCATTAAGGCCAAGGGCAGAAAGTAAAAGCTTTCTA
GACCAT

BS08059.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 924 CG1542-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-RA 1207 CG1542-RA 84..1010 14..940 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31213813..31214587 166..940 3875 100 Plus
3R 32079331 3R 31213670..31213755 81..166 430 100 Plus
3R 32079331 3R 31213541..31213609 14..82 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:51:44 has no hits.

BS08059.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:35 Download gff for BS08059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 1..924 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:46 Download gff for BS08059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 122..1058 3..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:58 Download gff for BS08059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 87..1008 17..938 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:36 Download gff for BS08059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 122..1058 3..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:23 Download gff for BS08059.complete
Subject Subject Range Query Range Percent Splice Strand
CG1542-RA 87..1008 17..938 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:23 Download gff for BS08059.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31213672..31213755 83..166 100 -> Plus
3R 31213544..31213609 17..82 100 -> Plus
3R 31213814..31214585 167..938 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:58 Download gff for BS08059.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27039266..27039331 17..82 100 -> Plus
arm_3R 27039394..27039477 83..166 100 -> Plus
arm_3R 27039536..27040307 167..938 100   Plus

BS08059.pep Sequence

Translation from 16 to 939

> BS08059.pep
MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV
TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG
NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD
DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT
KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN
KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR
IKAKGRK*

BS08059.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1542-PA 307 CG1542-PA 1..307 1..307 1549 100 Plus