Clone Sequence Records
BS08059.3prime Sequence
953 bp (900 high quality bases) assembled on 2006-01-06
> BS08059.3prime
ATGGTCTAGAAAGCTTTTACTTTCTGCCCTTGGCCTTAATGCGTCGCGAT
TTGCCAAGCCGCTTGTTGACCGAAGCACCTGCCTTTACGCCCCGCTGGCG
CCTGGAGGACTTGTCGCCATCCAATCCCGCGGAGGAGGACTTTGTGTTCC
TCTTGAGGCCCTTCTTCTTGCCGCCGAAGCCGAACTTCTTGTTGCGCTTC
TTGCGATTCTCGGCTGACTGCTTCTGCTTGGACTCAAGCGCCTTGGCGTC
CTCCAGGAAGTCCAGGTTTTTCAGCTTGCCCTTGCGGAACTTCTTCAGTT
TGTCCAGCATGTCCTTCTTCTCGGCTTCGCGTTGGACCTTGGTCTGTTTG
GCCAGCATCTTGCCCATCTTGCGCTGCTCGCGGATCTGCTTGATGCGCTC
GGATTTCGCCTGTCCTTGCTGTTTGGCCATCAGGTTGGCGCGCACCTTCT
GCATGTGCTCGTCGGACTTGGCCATTTCAGCGAAGTAGTCATCGGGTCGA
CGAGTCTTTATGCCCAGCTCGTGAAGGCGGGGAATGGCCTCCAGAACAGC
ACTTTGCGCCTGTCGGTGGAAGAGCATCTCCCTCTTGAAGTCATTCAGGA
CGGGATCCTCCTCGGGCCGAATGTAGGGCAGCTTGGCGTTGCCCTTGAAG
AGATTGGCCCGCTTCTGCTCGTGCTTCTCCAGCTGTACAGCGAGTTCCGG
CGCCAGTGGAGCTAGTGTGTTGATCATGTCCAGGCGTTCCAGCCAAGGCA
GTTGCATCTTGATAGCCTCTGTCTTGGCCAGCAGTTTGGTCACATCGTTC
ACTTTGTCTCTCTGGCCATTGAATTCCACATTTAGGCCTGGTTTCAAGTC
GCCTCGCTCAAATGCCGCTTGCAGCTCGGCATCTGAGTTATCCCCTGAGT
CGTAGCCCGAGGCACTGTCCTCCATTCAAAGTCCGACATGTCGACTGATA
ACT
BS08059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-PA | 924 | CG1542-RA | 15..924 | 926..17 | 4550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 1207 | CG1542-RA | 84..1010 | 942..17 | 4610 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31213813..31214587 | 791..17 | 3875 | 100 | Minus |
3R | 32079331 | 3R | 31213670..31213755 | 876..791 | 430 | 100 | Minus |
3R | 32079331 | 3R | 31213541..31213609 | 942..875 | 295 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:05:08 has no hits.
BS08059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:20 Download gff for
BS08059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 1..924 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:03 Download gff for
BS08059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 1..924 | 17..939 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:40:15 Download gff for
BS08059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 74..1010 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:40 Download gff for
BS08059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 74..1010 | 17..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:40 Download gff for
BS08059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31213531..31213609 | 875..953 | 93 | -> | Minus |
3R | 31213672..31213755 | 791..874 | 100 | -> | Minus |
3R | 31213814..31214587 | 17..790 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:40:15 Download gff for
BS08059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27039253..27039331 | 875..953 | 93 | -> | Minus |
arm_3R | 27039394..27039477 | 791..874 | 100 | -> | Minus |
arm_3R | 27039536..27040309 | 17..790 | 100 | | Minus |
BS08059.5prime Sequence
886 bp (791 high quality bases) assembled on 2006-01-06
> BS08059.5prime
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACNAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTCG
BS08059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-PA | 924 | CG1542-RA | 1..870 | 17..886 | 4331 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 1207 | CG1542-RA | 84..956 | 14..886 | 4354 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31213813..31214533 | 166..886 | 3594 | 99.9 | Plus |
3R | 32079331 | 3R | 31213670..31213755 | 81..166 | 430 | 100 | Plus |
3R | 32079331 | 3R | 31213541..31213609 | 14..82 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:00:22 has no hits.
BS08059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:21 Download gff for
BS08059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:04 Download gff for
BS08059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:29 Download gff for
BS08059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 74..956 | 3..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:24 Download gff for
BS08059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 74..956 | 3..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:24 Download gff for
BS08059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31213531..31213609 | 3..82 | 95 | -> | Plus |
3R | 31213672..31213755 | 83..166 | 100 | -> | Plus |
3R | 31213814..31214533 | 167..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:29 Download gff for
BS08059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27039253..27039331 | 3..82 | 95 | -> | Plus |
arm_3R | 27039394..27039477 | 83..166 | 100 | -> | Plus |
arm_3R | 27039536..27040255 | 167..886 | 99 | | Plus |
BS08059.complete Sequence
956 bp (956 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636082
> BS08059.complete
GAAGTTATCAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGG
GCTACGACTCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAG
CGAGGCGACTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGA
CAAAGTGAACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGA
TGCAACTGCCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCA
CTGGCGCCGGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGC
CAATCTCTTCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGG
ATCCCGTCCTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCG
CAAAGTGCTGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAA
GACTCGTCGACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGC
ACATGCAGAAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCG
AAATCCGAGCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGAT
GCTGGCCAAACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGC
TGGACAAACTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTC
CTGGAGGACGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAA
TCGCAAGAAGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCC
TCAAGAGGAACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCC
TCCAGGCGCCAGCGGGGCGTAAAGGCAGGTGCTTCGGTCAACAAGCGGCT
TGGCAAATCGCGACGCATTAAGGCCAAGGGCAGAAAGTAAAAGCTTTCTA
GACCAT
BS08059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 924 | CG1542-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-RA | 1207 | CG1542-RA | 84..1010 | 14..940 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31213813..31214587 | 166..940 | 3875 | 100 | Plus |
3R | 32079331 | 3R | 31213670..31213755 | 81..166 | 430 | 100 | Plus |
3R | 32079331 | 3R | 31213541..31213609 | 14..82 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:44 has no hits.
BS08059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:35 Download gff for
BS08059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:46 Download gff for
BS08059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 122..1058 | 3..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:58 Download gff for
BS08059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 87..1008 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:36 Download gff for
BS08059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 122..1058 | 3..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:23 Download gff for
BS08059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1542-RA | 87..1008 | 17..938 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:23 Download gff for
BS08059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31213672..31213755 | 83..166 | 100 | -> | Plus |
3R | 31213544..31213609 | 17..82 | 100 | -> | Plus |
3R | 31213814..31214585 | 167..938 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:58 Download gff for
BS08059.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27039266..27039331 | 17..82 | 100 | -> | Plus |
arm_3R | 27039394..27039477 | 83..166 | 100 | -> | Plus |
arm_3R | 27039536..27040307 | 167..938 | 100 | | Plus |
BS08059.pep Sequence
Translation from 16 to 939
> BS08059.pep
MSDFEMEDSASGYDSGDNSDAELQAAFERGDLKPGLNVEFNGQRDKVNDV
TKLLAKTEAIKMQLPWLERLDMINTLAPLAPELAVQLEKHEQKRANLFKG
NAKLPYIRPEEDPVLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPD
DYFAEMAKSDEHMQKVRANLMAKQQGQAKSERIKQIREQRKMGKMLAKQT
KVQREAEKKDMLDKLKKFRKGKLKNLDFLEDAKALESKQKQSAENRKKRN
KKFGFGGKKKGLKRNTKSSSAGLDGDKSSRRQRGVKAGASVNKRLGKSRR
IKAKGRK*
BS08059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1542-PA | 307 | CG1542-PA | 1..307 | 1..307 | 1549 | 100 | Plus |