Clone Sequence Records
BS08060.3prime Sequence
892 bp (863 high quality bases) assembled on 2006-01-06
> BS08060.3prime
ATGGTCTAGAAAGCTTCTACTGCATCATCACCTCCTGGCTGGTGTCATCG
ATCTCCATGGCGGCCGGATCGTCCTTGGCGGCCTCTTCGGTGGCCATTGC
GCCGGCATTGGCGCTTTCGGCCATTACCACCTCCTCGACGGTGGCCGACG
GCGAGACGCGTGCCTCCTCCTCGGCTGGAGTATCCTCCATGGGCTGGTCG
TTGAGGGCCAAGACAGGCGGAGTTACAGCGGCGACCAAGGGCGAAGCCTG
CGAGTCATCGCCTGTCTCAGCAGGCGGCGTCTCAGCAGCGGAATCGGCAG
CGCCCAAAGGAGATTGCGGTGTGGTTGCAGCTGCCAGATCTTCCACAGCA
GGACTAGAAGCATCCTCAACCGGCGACTTCTCGACTGACTCCTGGGCTGC
CTCGGTCGCTTTGGAAGTGGTCAAGTCGTTCCTATTCTCGCTTTCTGCAT
TCGGCTCGGCAGCCTGCTTTTCATCCGAAACCGACTTCTCGGCCGCCTCA
GTTTCAGTCTTTTCCGGTTGGCTCTTCTTGGTCTCGGCCTCTGGATCGTC
CTCAGATTTGGTCTTCGGTTTCGATTCGGAGGAAGCTATCTTTTCTTCAG
CGGGTTTTTCTGCTGATGGGGCATCGTCAGTCTCAGTAGAGTCGATATCG
TCCTGCTTTTCAGTTTTAATTGGTGCATGTTTTTTCTCCTCCTTTTCGTT
TTCTGCCTTGACTTTGACAGGCTCCTGGTTTTCCCCATCGGCAGGCGGTG
TAGATTTCTTGACAACTGCCTTGTCGCCTAACTGTGCCACCTTTCCGTCC
GGTTTATCAGACTCGACGACCTCTTCCTTCTTTACAATCTCTTCTTTTGG
CTCGATTGCCACCTTTTTGTCCTCCTCCCTCTTCTTTTCCTG
BS08060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2890-PA | 1830 | PPP4R2r-RA | 955..1830 | 892..17 | 4380 | 100 | Minus |
| CG2890-PB | 1830 | PPP4R2r-RB | 955..1830 | 892..17 | 4380 | 100 | Minus |
| CG2890-PC | 1830 | PPP4R2r-RC | 955..1830 | 892..17 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-RD | 2473 | CG2890-RD | 1162..2038 | 892..16 | 4385 | 100 | Minus |
| PPP4R2r-RC | 2409 | CG2890-RC | 1098..1974 | 892..16 | 4385 | 100 | Minus |
| PPP4R2r-RB | 2397 | CG2890-RB | 1086..1962 | 892..16 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10480632..10481508 | 892..16 | 4385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:04:57 has no hits.
BS08060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:22 Download gff for
BS08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2890-PA | 955..1830 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:05 Download gff for
BS08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2890-PC | 955..1830 | 17..892 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:40:13 Download gff for
BS08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RB | 1086..1964 | 11..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:07 Download gff for
BS08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RB | 1086..1964 | 11..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:07 Download gff for
BS08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10480632..10481510 | 11..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:40:13 Download gff for
BS08060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10374665..10375543 | 11..892 | 99 | | Minus |
BS08060.5prime Sequence
881 bp (829 high quality bases) assembled on 2006-01-06
> BS08060.5prime
GAAGTTATCAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGC
AGATCCTAGAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAG
CTGGAGGAGTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAA
GTGGTCCAGCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCA
AGCACTTTAATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCG
AATGTGGACCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCG
CTTGGACCTTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGC
TACTAATCGATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGT
GCTTTGGAAAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAA
GCGTACCGAAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGG
ACCTCTCCATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGT
AACGCCGATGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCA
GAAGGCAAGCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGA
AGGCAAAACTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAA
ACGGACACAGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAA
TGACAACGATGAGACTGATTCGCCGCATGAGGCTGCCGAGATCGAGGAGC
CCGATGAAGAGGTGGATGAGGCTGATCAGGAGACCCAGACCCACCAGCAG
CCTGCTTACGGCAGTCAGAAGGAGGGCGAGC
BS08060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2890-PA | 1830 | PPP4R2r-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
| CG2890-PB | 1830 | PPP4R2r-RB | 1..825 | 17..841 | 4100 | 99.8 | Plus |
| CG2890-PC | 1830 | PPP4R2r-RC | 1..825 | 17..841 | 4100 | 99.8 | Plus |
| CG2890-PA | 1830 | PPP4R2r-RA | 830..865 | 846..881 | 180 | 100 | Plus |
| CG2890-PB | 1830 | PPP4R2r-RB | 830..865 | 846..881 | 180 | 100 | Plus |
| CG2890-PC | 1830 | PPP4R2r-RC | 830..865 | 846..881 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-RC | 2409 | CG2890-RC | 144..1008 | 17..881 | 4265 | 99.7 | Plus |
| PPP4R2r-RB | 2397 | CG2890-RB | 132..996 | 17..881 | 4265 | 99.7 | Plus |
| PPP4R2r-RA | 2426 | CG2890-RA | 161..1025 | 17..881 | 4265 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10480082..10480542 | 421..881 | 2245 | 99.1 | Plus |
| X | 23542271 | X | 10479501..10479717 | 17..233 | 1085 | 100 | Plus |
| X | 23542271 | X | 10479835..10480024 | 233..422 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:31:52 has no hits.
BS08060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:23 Download gff for
BS08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2890-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:07 Download gff for
BS08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2890-PC | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:52 Download gff for
BS08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 152..1025 | 7..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:09 Download gff for
BS08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 152..1025 | 7..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:09 Download gff for
BS08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10479492..10479717 | 7..233 | 98 | -> | Plus |
| X | 10479836..10480024 | 234..422 | 100 | -> | Plus |
| X | 10480084..10480542 | 423..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:52 Download gff for
BS08060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10373525..10373750 | 7..233 | 98 | -> | Plus |
| arm_X | 10373869..10374057 | 234..422 | 100 | -> | Plus |
| arm_X | 10374117..10374575 | 423..881 | 99 | | Plus |
BS08060.complete Sequence
1862 bp assembled on 2008-01-03
GenBank Submission: FJ636083
> BS08060.complete
GAAGTTATCAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGC
AGATCCTAGAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAG
CTGGAGGAGTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAA
GTGGTCCAGCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCA
AGCACTTTAATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCG
AATGTGGACCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCG
CTTGGACCTTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGC
TACTAATCGATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGT
GCTTTGGAAAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAA
GCGTACCGAAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGG
ACCTCTCCATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGT
AACGCCGATGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCA
GAAGGCAAGCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGA
AGGCAAAACTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAA
ACGGACACAGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAA
TGACAACGATGAGACTGATTCGCCGCATGAGGCTGCCGAGATCGAGGAGC
CCGATGAAGAGGTGGATGAGGCTGATCAGGAGACCAAGACCACCAAGCAG
CCTGCTTACGGCAGTCAGAAGGAGGGCGAGCAGGAGGAAAGTTTCCCATC
ATCTGCCGATGACGAGGCGGAGGACCCAATGGTGAGCAAATCCATAGAAG
CTGAGAAAGAACTTGTTGCTCAGGAAAAGAAGAGGGAGGAGGACAAAAAG
GTGGCAATCGAGCCAAAAGAAGAGATTGTAAAGAAGGAAGAGGTCGTCGA
GTCTGATAAACCGGACGGAAAGGTGGCACAGTTAGGCGACAAGGCAGTTG
TCAAGAAATCTACACCGCCTGCCGATGGGGAAAACCAGGAGCCTGTCAAA
GTCAAGGCAGAAAACGAAAAGGAGGAGAAAAAACATGCACCAATTAAAAC
TGAAAAGCAGGACGATATCGACTCTACTGAGACTGACGATGCCCCATCAG
CAGAAAAACCCGCTGAAGAAAAGATAGCTTCCTCCGAATCGAAACCGAAG
ACCAAATCTGAGGACGATCCAGAGGCCGAGACCAAGAAGAGCCAACCGGA
AAAGACTGAAACTGAGGCGGCCGAGAAGTCGGTTTCGGATGAAAAGCAGG
CTGCCGAGCCGAATGCAGAAAGCGAGAATAGGAACGACTTGACCACTTCC
AAAGCGACCGAGGCAGCCCAGGAGTCAGTCGAGAAGTCGCCGGTTGAGGA
TGCTTCTAGTCCTGCTGTGGAAGATCTGGCAGCTGCAACCACACCGCAAT
CTCCTTTGGGCGCTGCCGATTCCGCTGCTGAGACGCCGCCTGCTGAGACA
GGCGATGACTCGCAGGCTTCGCCCTTGGTCGCCGCTGTAACTCCGCCTGT
CTTGGCCCTCAACGACCAGCCCATGGAGGATACTCCAGCCGAGGAGGAGG
CACGCGTCTCGCCGTCGGCCACCGTCGAGGAGGTGGTAATGGCCGAAAGC
GCCAATGCCGGCGCAATGGCCACCGAAGAGGCCGCCAAGGACGATCCGGC
CGCCATGGAGATCGATGACACCAGCCAGGAGGTGATGATGCAGTAGAAGC
TTTCTAGACCAT
BS08060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-RC | 1830 | CG2890-PC | 1..1830 | 17..1846 | 9150 | 100 | Plus |
| PPP4R2r-RB | 1830 | CG2890-PB | 1..1830 | 17..1846 | 9150 | 100 | Plus |
| PPP4R2r-RA | 1830 | CG2890-PA | 1..1830 | 17..1846 | 9150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-RC | 2409 | CG2890-RC | 144..1974 | 17..1847 | 9155 | 100 | Plus |
| PPP4R2r-RB | 2397 | CG2890-RB | 132..1962 | 17..1847 | 9155 | 100 | Plus |
| PPP4R2r-RA | 2426 | CG2890-RA | 161..1991 | 17..1847 | 9155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10480082..10481508 | 421..1847 | 7135 | 100 | Plus |
| X | 23542271 | X | 10479501..10479717 | 17..233 | 1085 | 100 | Plus |
| X | 23542271 | X | 10479835..10480024 | 233..422 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:31:42 has no hits.
BS08060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:57 Download gff for
BS08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RC | 1..1830 | 17..1846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:54 Download gff for
BS08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RC | 149..1978 | 17..1846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:08 Download gff for
BS08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 161..1990 | 17..1846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:57 Download gff for
BS08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RC | 140..1981 | 7..1852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:17 Download gff for
BS08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 161..1990 | 17..1846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:17 Download gff for
BS08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10479501..10479717 | 17..233 | 100 | -> | Plus |
| X | 10479836..10480024 | 234..422 | 100 | -> | Plus |
| X | 10480084..10481507 | 423..1846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:08 Download gff for
BS08060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10373534..10373750 | 17..233 | 100 | -> | Plus |
| arm_X | 10373869..10374057 | 234..422 | 100 | -> | Plus |
| arm_X | 10374117..10375540 | 423..1846 | 100 | | Plus |
BS08060.pep Sequence
Translation from 16 to 1845
> BS08060.pep
MVTMENSDEIMQILERFTDLKQKEIPKELEEYLQYVAKTGDTIFKWSSLK
YLFREKLLSVIKHFNEDSPRLEEIPNYPNVDPFNYETMKSSLLERLDLFN
AAPFTVQRLCELLIDPRKQYSRIDKFMRALEKNILVVSTIDPGRKRTESE
NGDSLDSVVNGDLSMEVNIDIEMENNNGNADEGSSPGAGSAGCAQKASCP
RSDDNDQPKAKKAKLEIDGEERSEASDETDTEVATRVKNEKDEKNDNDET
DSPHEAAEIEEPDEEVDEADQETKTTKQPAYGSQKEGEQEESFPSSADDE
AEDPMVSKSIEAEKELVAQEKKREEDKKVAIEPKEEIVKKEEVVESDKPD
GKVAQLGDKAVVKKSTPPADGENQEPVKVKAENEKEEKKHAPIKTEKQDD
IDSTETDDAPSAEKPAEEKIASSESKPKTKSEDDPEAETKKSQPEKTETE
AAEKSVSDEKQAAEPNAESENRNDLTTSKATEAAQESVEKSPVEDASSPA
VEDLAAATTPQSPLGAADSAAETPPAETGDDSQASPLVAAVTPPVLALND
QPMEDTPAEEEARVSPSATVEEVVMAESANAGAMATEEAAKDDPAAMEID
DTSQEVMMQ*
BS08060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-PC | 609 | CG2890-PC | 1..609 | 1..609 | 3071 | 100 | Plus |
| PPP4R2r-PB | 609 | CG2890-PB | 1..609 | 1..609 | 3071 | 100 | Plus |
| PPP4R2r-PA | 609 | CG2890-PA | 1..609 | 1..609 | 3071 | 100 | Plus |
| PPP4R2r-PD | 522 | CG2890-PD | 1..522 | 88..609 | 2616 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 325..809 | 148..605 | 248 | 19.5 | Plus |
