Clone Sequence Records
BS08061.3prime Sequence
967 bp (793 high quality bases) assembled on 2006-01-06
> BS08061.3prime
ATGGTCTAGAAAGCTTCTAGTAGGGCTTCGAGTCCTTGGGCTTCTTCAGC
TGCACCTTGAGACGCTTGGTGCCCACCTGGAAGCCGTTCATCGCCTTTAT
GGCCACCTGGGCCGAGTCCGGATTGTCGAAGGAGACAAACCCGAAGCACT
TCGACAGGCTCGTCTGTTTGTCGATGAACACCTTGGCCGAGATCACATTG
CCGAAGGGCAGGAACGTGGAGGCCAGATCCGTATCGGTGAACTCCTGCGG
CAGATGGTAGATGAAAAGGTTGCAGCCCTCGGGTCCTTCAATCTGCTTTC
CCGCTGCGGCGGCGGCTGCGGCGCTGAGGGCAACGCTGGCCAGCGGCGAA
GTGGACAATGCACTGGCGCTCCCGAATTGCGGCAGACCGGCGGCTGTTGA
CATATATGCCGATGCCATTGGATTCGGATCGGACCAGAGCAGCGCAGCCG
TGTTGGTCAGTTGGGCGCTTCCAGGCGATGTGGCAGCGGCGGCTGCCGCG
GCGGCATTCGAGAGACTCGGCTGCGTCATGGCCGCAATGGCCGCTAGATT
CTGGACGGTCATCGGGGTCAAAAGTCCTGCGGCCGCCACAGCGCTGGTGT
CCGTCGCCGAGCTGCTCTGCTGGGCTCCCAGTCCTGTGAGGGCTTGCAAC
AACTGGTGCTGCAGTCCCACCGCCTGCAGCTGCTGCAGCAGTTGAATGGA
GGCCGGGGTAATGGCATCTGCGCCGAGAACCGGCGAAGGCTGCTGCGGCG
GATTGGGCAGGATGGGCGTGGTCACGCTGGTGGCCGTTTGGCCCAGAGGT
ATGTTGATGTTGCTGGCCAGGTTCCAGAGATTGGCCTGAATTTGCTGAAT
CTTCTTCTGCTCCTTCTCTTTTTGCGTATCGGCGAACTTGACGACCAGCG
GCGATGTGCAGCCCTCCATGATCTTGTTCTGGCTCAGGGTCACTTTAATG
GCCGAAATGGCAGCGTG
BS08061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31762-PB | 2433 | aret-RB | 1483..2433 | 967..17 | 4755 | 100 | Minus |
| CG31762-PA | 1815 | aret-RA | 865..1815 | 967..17 | 4755 | 100 | Minus |
| CG31762-PD | 1086 | aret-RD | 136..1086 | 967..17 | 4755 | 100 | Minus |
| CG31762-PC | 1851 | aret-RC | 865..1397 | 967..435 | 2665 | 100 | Minus |
| CG31762-PC | 1851 | aret-RC | 1433..1851 | 435..17 | 2095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 3510 | CG31762-RK | 1199..2150 | 967..16 | 4760 | 100 | Minus |
| aret-RJ | 2431 | CG31762-RJ | 1228..2179 | 967..16 | 4760 | 100 | Minus |
| aret-RI | 3019 | CG31762-RI | 923..1874 | 967..16 | 4760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12298813..12299111 | 941..643 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 12310680..12310951 | 287..16 | 1360 | 100 | Minus |
| 2L | 23513712 | 2L | 12299186..12299395 | 644..435 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 12304446..12304596 | 435..285 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 12396291..12396524 | 287..54 | 450 | 79.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:13 has no hits.
BS08061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:24 Download gff for
BS08061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-PB | 1483..2433 | 17..967 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:09 Download gff for
BS08061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31762-PD | 136..1086 | 17..967 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:15:00 Download gff for
BS08061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 923..1877 | 13..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:52 Download gff for
BS08061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 923..1877 | 13..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:52 Download gff for
BS08061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12298723..12298749 | 941..967 | 100 | -> | Minus |
| 2L | 12298814..12299111 | 643..940 | 100 | -> | Minus |
| 2L | 12299188..12299394 | 436..642 | 100 | -> | Minus |
| 2L | 12304446..12304595 | 286..435 | 100 | -> | Minus |
| 2L | 12310682..12310954 | 13..285 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:15:00 Download gff for
BS08061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12298723..12298749 | 941..967 | 100 | -> | Minus |
| arm_2L | 12298814..12299111 | 643..940 | 100 | -> | Minus |
| arm_2L | 12299188..12299394 | 436..642 | 100 | -> | Minus |
| arm_2L | 12304446..12304595 | 286..435 | 100 | -> | Minus |
| arm_2L | 12310682..12310954 | 13..285 | 99 | | Minus |
BS08061.5prime Sequence
916 bp (831 high quality bases) assembled on 2006-01-06
> BS08061.5prime
GAAGTTATCAGTCGACATGTTCACCAGCCGCGCTTCGTTTTTGGCCAATC
GCCGCATGATTTTCGATTTCTCCGAGAAGAACAACGATATCTACTTGGAT
GCTTTTGGTATGAGTGATAAGAGCAGCAGTGCAACGAACAGCCTGCCGAA
TAGTCCCATACACAGCAACAACAATAATCCATCGCTGCTGAACAACAACA
ACAATAACAGCAACGGCACCAGCAGCAACAACAGCTTAAACGTTGGCAAC
AACAACAGCAATCCGAGCTTGGGCGGCAGCAACAGCAACGCACTGGTTTC
CGTAGGCAGCAACGGTATAATGTCCGCCGCCGGTTTGGTCAACAACAATA
ACAATCCGTGCAGCGCCAACCGCAATGTGGTCGCCATGGTCGACGATGAC
GCCTGCTTCCGTCTGGATACGGACGCCACGGTGACGTACGGCGAGAAGGA
ACCGGATCCGGACAACATCAAGATGTTCGTCGGCCAGGTGCCCAAGTCGA
TGGACGAGTCGCAGCTGCGCGAGATGTTCGAGGAGTACGGCGCCGTGCAC
TCGATCAACGTTCTGCGGGACAAGGCTACCGGAATTAGCAAGGGTTGCTG
CTTTGTGACATTTTATACGAGACACGCCGCCCTGAAAGCCCAGGATGCTT
TGCATAATGTTAAGACGCTAAATGGGATGTACCATCCCATTCAAATGAAG
CCCGCCGATAGCGAGAATCGCAATGAACGCAAACTCTTTGTGGGTATGCT
AAACAAGAAGCTGAACGAGAACGACGTTCGCAAGCTATTTGAAGTCCACG
GAGCCATCGAGGAGTGCACCGTCCTTCGGGACCAAACGGACAGAGCAAGG
GTTGTGCCTTCGTCACATTCGCCACCAAGCACGCTGCCATTTCGGCCATT
AAAGTGACCCTGAGCC
BS08061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31762-PA | 1815 | aret-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG31762-PC | 1851 | aret-RC | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG31762-PB | 2433 | aret-RB | 702..1438 | 100..836 | 3685 | 100 | Plus |
| CG31762-PD | 1086 | aret-RD | 1..91 | 746..836 | 455 | 100 | Plus |
| CG31762-PA | 1815 | aret-RA | 819..901 | 834..916 | 415 | 100 | Plus |
| CG31762-PC | 1851 | aret-RC | 819..901 | 834..916 | 415 | 100 | Plus |
| CG31762-PB | 2433 | aret-RB | 1437..1519 | 834..916 | 415 | 100 | Plus |
| CG31762-PD | 1086 | aret-RD | 90..172 | 834..916 | 415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RF | 3342 | CG31762-RF | 334..1234 | 17..916 | 4480 | 99.9 | Plus |
| aret-RE | 2302 | CG31762-RE | 334..1234 | 17..916 | 4480 | 99.9 | Plus |
| aret-RA | 2651 | CG31762-RA | 334..1234 | 17..916 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12271591..12272086 | 100..595 | 2480 | 100 | Plus |
| 2L | 23513712 | 2L | 12298567..12298749 | 725..906 | 865 | 99.5 | Plus |
| 2L | 23513712 | 2L | 12278836..12278919 | 593..676 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 12271265..12271347 | 17..99 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 12282513..12282562 | 676..725 | 250 | 100 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 796..881 | 220 | 86.2 | Plus |
| 2L | 23513712 | 2L | 12358120..12358243 | 452..575 | 185 | 76.6 | Plus |
Blast to na_te.dros performed 2015-02-10 23:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2540 | 137..369 | 256 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6899 | 122..289 | 239 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6919 | 191..375 | 239 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2514 | 113..289 | 235 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6848 | 163..289 | 231 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6893 | 149..313 | 222 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6946 | 122..288 | 215 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2630 | 119..375 | 207 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2394 | 202..289 | 197 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6886 | 218..375 | 173 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2452 | 215..374 | 168 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2474 | 206..375 | 167 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1615 | 163..262 | 162 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1154 | 162..235 | 153 | 70.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1142 | 209..289 | 143 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2532 | 163..235 | 141 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1496..1584 | 205..289 | 130 | 62.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2014..2104 | 162..261 | 128 | 64 | Plus |
BS08061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:26 Download gff for
BS08061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-PA | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:10 Download gff for
BS08061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31762-PC | 1..901 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:47 Download gff for
BS08061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 334..1234 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:20:20 Download gff for
BS08061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 334..1234 | 17..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:20:20 Download gff for
BS08061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12298568..12298754 | 726..914 | 97 | | Plus |
| 2L | 12271265..12271347 | 17..99 | 100 | -> | Plus |
| 2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| 2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| 2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:47 Download gff for
BS08061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| arm_2L | 12271265..12271347 | 17..99 | 100 | -> | Plus |
| arm_2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| arm_2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
| arm_2L | 12298568..12298754 | 726..914 | 97 | | Plus |
BS08061.complete Sequence
1847 bp assembled on 2008-08-14
GenBank Submission: FJ636084
> BS08061.complete
GAAGTTATCAGTCGACATGTTCACCAGCCGCGCTTCGTTTTTGGCCAATC
GCCGCATGATTTTCGATTTCTCCGAGAAGAACAACGATATCTACTTGGAT
GCTTTTGGTATGAGTGATAAGAGCAGCAGTGCAACGAACAGCCTGCCGAA
TAGTCCCATACACAGCAACAACAATAATCCATCGCTGCTGAACAACAACA
ACAATAACAGCAACGGCACCAGCAGCAACAACAGCTTAAACGTTGGCAAC
AACAACAGCAATCCGAGCTTGGGCGGCAGCAACAGCAACGCACTGGTTTC
CGTAGGCAGCAACGGTATAATGTCCGCCGCCGGTTTGGTCAACAACAATA
ACAATCCGTGCAGCGCCAACCGCAATGTGGTCGCCATGGTCGACGATGAC
GCCTGCTTCCGTCTGGATACGGACGCCACGGTGACGTACGGCGAGAAGGA
ACCGGATCCGGACAACATCAAGATGTTCGTCGGCCAGGTGCCCAAGTCGA
TGGACGAGTCGCAGCTGCGCGAGATGTTCGAGGAGTACGGCGCCGTGCAC
TCGATCAACGTTCTGCGGGACAAGGCTACCGGAATTAGCAAGGGTTGCTG
CTTTGTGACATTTTATACGAGACACGCCGCCCTGAAAGCCCAGGATGCTT
TGCATAATGTTAAGACGCTAAATGGGATGTACCATCCCATTCAAATGAAG
CCCGCCGATAGCGAGAATCGCAATGAACGCAAACTCTTTGTGGGTATGCT
AAACAAGAAGCTGAACGAGAACGACGTTCGCAAGCTATTTGAAGTCCACG
GAGCCATCGAGGAGTGCACCGTCCTTCGGGACCAAAACGGACAGAGCAAG
GGTTGTGCCTTCGTCACATTCGCCACCAAGCACGCTGCCATTTCGGCCAT
TAAAGTGACCCTGAGCCAGAACAAGATCATGGAGGGCTGCACATCGCCGC
TGGTCGTCAAGTTCGCCGATACGCAAAAAGAGAAGGAGCAGAAGAAGATT
CAGCAAATTCAGGCCAATCTCTGGAACCTGGCCAGCAACATCAACATACC
TCTGGGCCAAACGGCCACCAGCGTGACCACGCCCATCCTGCCCAATCCGC
CGCAGCAGCCTTCGCCGGTTCTCGGCGCAGATGCCATTACCCCGGCCTCC
ATTCAACTGCTGCAGCAGCTGCAGGCGGTGGGACTGCAGCACCAGTTGTT
GCAAGCCCTCACAGGACTGGGAGCCCAGCAGAGCAGCTCGGCGACGGACA
CCAGCGCTGTGGCGGCCGCAGGACTTTTGACCCCGATGACCGTCCAGAAT
CTAGCGGCCATTGCGGCCATGACGCAGCCGAGTCTCTCGAATGCCGCCGC
GGCAGCCGCCGCTGCCACATCGCCTGGAAGCGCCCAACTGACCAACACGG
CTGCGCTGCTCTGGTCCGATCCGAATCCAATGGCATCGGCATATATGTCA
ACAGCCGCCGGTCTGCCGCAATTCGGGAGCGCCAGTGCATTGTCCACTTC
GCCGCTGGCCAGCGTTGCCCTCAGCGCCGCAGCCGCCGCCGCAGCGGGAA
AGCAGATTGAAGGACCCGAGGGCTGCAACCTTTTCATCTACCATCTGCCG
CAGGAGTTCACCGATACGGATCTGGCCTCCACGTTCCTGCCCTTCGGCAA
TGTGATCTCGGCCAAGGTGTTCATCGACAAACAGACGAGCCTGTCGAAGT
GCTTCGGGTTTGTCTCCTTCGACAATCCGGACTCGGCCCAGGTGGCCATA
AAGGCGATGAACGGCTTCCAGGTGGGCACCAAGCGTCTCAAGGTGCAGCT
GAAGAAGCCCAAGGACTCGAAGCCCTACTAGAAGCTTTCTAGACCAT
BS08061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RE | 1815 | CG31762-PE | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| aret-RA | 1815 | CG31762-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| aret-RG | 2433 | CG31762-PG | 702..2433 | 100..1831 | 8660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RE | 2302 | CG31762-RE | 334..2149 | 17..1832 | 9080 | 100 | Plus |
| aret-RA | 2651 | CG31762-RA | 334..2149 | 17..1832 | 9080 | 100 | Plus |
| aret-RI | 3019 | CG31762-RI | 141..1874 | 99..1832 | 8670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12271591..12272086 | 100..595 | 2480 | 100 | Plus |
| 2L | 23513712 | 2L | 12298813..12299111 | 907..1205 | 1495 | 100 | Plus |
| 2L | 23513712 | 2L | 12310680..12310951 | 1561..1832 | 1360 | 100 | Plus |
| 2L | 23513712 | 2L | 12299186..12299395 | 1204..1413 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 12298567..12298749 | 725..907 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 12304446..12304596 | 1413..1563 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 12396291..12396524 | 1561..1794 | 450 | 79.5 | Plus |
| 2L | 23513712 | 2L | 12278836..12278919 | 593..676 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 12271265..12271347 | 17..99 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 12282513..12282562 | 676..725 | 250 | 100 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 796..882 | 240 | 85.1 | Plus |
| 2L | 23513712 | 2L | 12358120..12358243 | 452..575 | 185 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-27 08:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2540 | 137..369 | 256 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6919 | 191..375 | 239 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6899 | 122..289 | 239 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2514 | 113..289 | 235 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6848 | 163..289 | 231 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6893 | 149..313 | 222 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6946 | 122..288 | 215 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2630 | 119..375 | 207 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2394 | 202..289 | 197 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6886 | 218..375 | 173 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2452 | 215..374 | 168 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2474 | 206..375 | 167 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1615 | 163..262 | 162 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1154 | 162..235 | 153 | 70.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1142 | 209..289 | 143 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2532 | 163..235 | 141 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1496..1584 | 205..289 | 130 | 62.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2014..2104 | 162..261 | 128 | 64 | Plus |
BS08061.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:20 Download gff for
BS08061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 330..2148 | 17..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:21 Download gff for
BS08061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 339..2148 | 22..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:05 Download gff for
BS08061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 335..2144 | 22..1831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:00 Download gff for
BS08061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 339..2148 | 22..1831 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:00 Download gff for
BS08061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12271270..12271347 | 22..99 | 100 | -> | Plus |
| 2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| 2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| 2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
| 2L | 12298568..12298749 | 726..907 | 100 | -> | Plus |
| 2L | 12298814..12299111 | 908..1205 | 100 | -> | Plus |
| 2L | 12299188..12299394 | 1206..1412 | 100 | -> | Plus |
| 2L | 12304446..12304595 | 1413..1562 | 100 | -> | Plus |
| 2L | 12310682..12310950 | 1563..1831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:21 Download gff for
BS08061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12304446..12304595 | 1413..1562 | 100 | -> | Plus |
| arm_2L | 12271270..12271347 | 22..99 | 100 | -> | Plus |
| arm_2L | 12271591..12272084 | 100..593 | 100 | -> | Plus |
| arm_2L | 12278837..12278919 | 594..676 | 100 | -> | Plus |
| arm_2L | 12282514..12282562 | 677..725 | 100 | -> | Plus |
| arm_2L | 12298568..12298749 | 726..907 | 100 | -> | Plus |
| arm_2L | 12298814..12299111 | 908..1205 | 100 | -> | Plus |
| arm_2L | 12299188..12299394 | 1206..1412 | 100 | -> | Plus |
| arm_2L | 12310682..12310950 | 1563..1831 | 100 | | Plus |
BS08061.pep Sequence
Translation from 16 to 1830
> BS08061.pep
MFTSRASFLANRRMIFDFSEKNNDIYLDAFGMSDKSSSATNSLPNSPIHS
NNNNPSLLNNNNNNSNGTSSNNSLNVGNNNSNPSLGGSNSNALVSVGSNG
IMSAAGLVNNNNNPCSANRNVVAMVDDDACFRLDTDATVTYGEKEPDPDN
IKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFY
TRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLN
ENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLS
QNKIMEGCTSPLVVKFADTQKEKEQKKIQQIQANLWNLASNINIPLGQTA
TSVTTPILPNPPQQPSPVLGADAITPASIQLLQQLQAVGLQHQLLQALTG
LGAQQSSSATDTSAVAAAGLLTPMTVQNLAAIAAMTQPSLSNAAAAAAAA
TSPGSAQLTNTAALLWSDPNPMASAYMSTAAGLPQFGSASALSTSPLASV
ALSAAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAK
VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKKPKD
SKPY*
BS08061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-PE | 604 | CG31762-PE | 1..604 | 1..604 | 3073 | 100 | Plus |
| aret-PA | 604 | CG31762-PA | 1..604 | 1..604 | 3073 | 100 | Plus |
| aret-PF | 620 | CG31762-PF | 1..620 | 1..604 | 3033 | 97.3 | Plus |
| aret-PG | 810 | CG31762-PG | 235..810 | 29..604 | 2930 | 100 | Plus |
| aret-PB | 810 | CG31762-PB | 235..810 | 29..604 | 2930 | 100 | Plus |
