Clone Sequence Records
BS08063.3prime Sequence
903 bp (822 high quality bases) assembled on 2006-01-06
> BS08063.3prime
ATGGTCTAGAAAGCTTTCACTTATTCCGGAGAAAGTAGCGATACAAAGTG
TTCTTTTGTCCGCTGGCGGTTGTGGCAGTTGCTGGGGCTCCACTGGCGAT
AGCTGCGCTTGTAGCGGCACCGGTCCCATTCGTTTGCTCAACAGCCGCCA
CCAGGGAGCTGCGCCACGATGCGATCAACTCCGTCTGCAGCTCCACGGGT
AGCTCTTTGAACACCTCGGCATCCACACCCGCTGGACAAACTATATTCGT
TAGGGCATCACACGTGGCCGTACTACTACTGCTGGTGACCACCGCTGTCG
TGGTGGGTGAGGGAAATGGCAAGGTTGTTGTGCTGGGTGCGCTCATGGCT
ATGGAGTCGTCCATGGGAGAAGGAAGCGGCGAGGATGCCGTAGAACTAGC
ATTTGAGCTCAAGCGACTGGCAGTGCGCGTCGTAACAAAGCGTAGACTGC
CGTCGATCCGTTGCAGCAACGTGTTTGGTGGCTGGACGGTGCGGAAGCGA
GGCGCAGGCGCGGACGTAGAGGTAGAAGGCGTGGTGCTCATGGGAAAGTC
TTTCTCGCTATCCCGCGAGTTGAGGCGCAGATCACAGACACGCAGTTTGC
TGGGCGAAGCTACTTCGGCGGCGGAATCTCCCACATCCGCCGCCAAGCGG
CTGCGCTTAGAAACAAGTAATCGGCCAATGCGACTCTTTTTCGGCGAGGG
TTCCACCTCAGTCTCAGAGAAGTCGCTGAAATCCGAATTGGTGGCCGCTG
ATTCGGAACCATTATCAAGTAGCATGGGCACAGGTGATGCAGTAGTGGCT
CTTCTCCTATAGAACTGATCGCTGGGTTTGAATGTTGTTGGCGAGGAGCG
GAAAGCGCACTCGTCTGATGTGGGACTCTCCGCTGTGGGACTTGTGAGAC
TCG
BS08063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7602-PB | 2214 | DNApol-iota-RB | 1328..2214 | 903..17 | 4410 | 99.8 | Minus |
| CG7602-PA | 2214 | DNApol-iota-RA | 1328..2214 | 903..17 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 3144 | CG7602-RC | 1412..2298 | 903..17 | 4420 | 99.9 | Minus |
| DNApol-iota-RA | 2622 | CG7602-RA | 1477..2363 | 903..17 | 4420 | 99.9 | Minus |
| DNApol-iota-RB | 2544 | CG7602-RB | 1399..2285 | 903..17 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8235657..8236543 | 903..17 | 4420 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:43:09 has no hits.
BS08063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:27 Download gff for
BS08063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1328..2214 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:12 Download gff for
BS08063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1328..2214 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:44:00 Download gff for
BS08063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 1399..2288 | 13..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:36 Download gff for
BS08063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 1399..2288 | 13..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:36 Download gff for
BS08063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8235657..8236546 | 13..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:44:00 Download gff for
BS08063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4061379..4062268 | 13..903 | 99 | | Minus |
BS08063.5prime Sequence
874 bp (790 high quality bases) assembled on 2006-01-06
> BS08063.5prime
GAAGTTATCAGTCGACATGGACTTCGCTAGCGTACTCGGTAAGAGCGAGG
CGCATCAGCGCACCATTATCCACCTGGACATGGACTACTTCTACGCTCAG
GTGGAGGAGATTCGGGATCCAACGTTGCGGTCGAAGGCCCTGGGCATTCA
GCAGAAGAACATCGTGGTCACCTGCAACTATGTGGCGCGGGCCAAAGGAG
TGACAAAATTGATGCTTATTGCAGAGGCACAGCGCATCTGTCCCGATTTG
GTTCTTGTCAATGGAGAAGACCTCGCCCCTTATCGGCAGATGTCGCAAAG
AATCTTTGACCTCCTGCTTAACTACACTCCCCTAGTGGAGAAGCTAGGCT
TCGATGAGAACTTTATGGATGTGACTGCACTTGTAGAACTGCGACAGGCT
CACGTTGCTGAGGCCCTGTTGAGACCACCGGTGGGTCATACGTATCCGGC
GGATGGTACTCCCTTGTCAAATTGCGATTGTGGCTGTGCCCAGCGGCTGG
CCATCGGCACTCGGATCGCCCAGGAAATCAGGGAGGAGCTCAAGCTCCGG
CTGGGAATTACCTGCTGCGCTGGAATCGCCTATAACAAGCTACTGGCCAA
GCTAGTCGGCAGTAGTCATGAGCCAAATCAGCAGACCGTTCTTGTTTCCA
CCTATGCAGAGCAGTTCATGCGGGAACTGGGCGACCTAAAGCGAGTCACT
GGGATTGGGCAGAAGACGCAGTGCCTTCTCCTGGAGGCGGGTATGTCATC
CGTCGAGCAGCTGCAGCAGTGCGACATGGACGTAATGCGGAAGAAATTTG
GATTTGAAACTGCCACCCGACTGCGAGATCTGGCCTTTGGCCGTGACACG
AGCTTAGTCCGTCCAGCGGAAACC
BS08063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7602-PB | 2214 | DNApol-iota-RB | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG7602-PA | 2214 | DNApol-iota-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 3144 | CG7602-RC | 85..941 | 17..872 | 4260 | 99.9 | Plus |
| DNApol-iota-RA | 2622 | CG7602-RA | 150..1006 | 17..872 | 4260 | 99.9 | Plus |
| DNApol-iota-RB | 2544 | CG7602-RB | 72..928 | 17..872 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8234266..8235113 | 17..864 | 4240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:36:16 has no hits.
BS08063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:28 Download gff for
BS08063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:14 Download gff for
BS08063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7602-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:37 Download gff for
BS08063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 68..930 | 13..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:45 Download gff for
BS08063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 68..930 | 13..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:45 Download gff for
BS08063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8234262..8235124 | 13..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:37 Download gff for
BS08063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4059984..4060846 | 13..874 | 99 | | Plus |
BS08063.complete Sequence
2246 bp assembled on 2008-01-03
GenBank Submission: FJ636085
> BS08063.complete
GAAGTTATCAGTCGACATGGACTTCGCTAGCGTACTCGGTAAGAGCGAGG
CGCATCAGCGCACCATTATCCACCTGGACATGGACTACTTCTACGCTCAG
GTGGAGGAGATTCGGGATCCAACGTTGCGGTCGAAGGCCCTGGGCATTCA
GCAGAAGAACATCGTGGTCACCTGCAACTATGTGGCGCGGGCCAAAGGAG
TGACAAAATTGATGCTTATTGCAGAGGCACAGCGCATCTGTCCCGATTTG
GTTCTTGTCAATGGAGAAGACCTCGCCCCTTATCGGCAGATGTCGCAAAG
AATCTTTGACCTCCTGCTTAACTACACTCCCCTAGTGGAGAAGCTAGGCT
TCGATGAGAACTTTATGGATGTGACTGCACTTGTAGAACTGCGACAGGCT
CACGTTGCTGAGGCCCTGTTGAGACCACCGGTGGGTCATACGTATCCGGC
GGATGGTACTCCCTTGTCAAATTGCGATTGTGGCTGTGCCCAGCGGCTGG
CCATCGGCACTCGGATCGCCCAGGAAATCAGGGAGGAGCTCAAGCTCCGG
CTGGGAATTACCTGCTGCGCTGGAATCGCCTATAACAAGCTACTGGCCAA
GCTAGTCGGCAGTAGTCATGAGCCAAATCAGCAGACCGTTCTTGTTTCCA
CCTATGCAGAGCAGTTCATGCGGGAACTGGGCGACCTAAAGCGAGTCACT
GGGATTGGGCAGAAGACGCAGTGCCTTCTCCTGGAGGCGGGTATGTCATC
CGTCGAGCAGCTGCAGCAGTGCGACATGGACGTAATGCGGAAGAAATTTG
GATTTGAAACTGCCACCCGACTGCGAGATCTGGCCTTTGGCCGTGACACG
AGCTTAGTCCGTCCCAGCGGAAAACCCAAGACCATTGGAATGGAAGATGC
CTGTAAGCCAATATCCGTGCGTACCGATGTGGAGGAAAGGTTTCGCATGC
TGCTCAAGCGGCTGGTGGAGCAAGTTGCAGAGGATGGACGCGTTCCCATT
GCCATCAAGGTCGTGTTGCGCAAGTTCGACTCGCAAAAGAAGAGCAGCCA
CCGTGAGACCAAACAGGCCAACATTCTACCCTCCCTTTTTAAGACCTCCA
TGTGTCCAGGAGAAACTGGTGTGAGCAAGGTACAACTGGCGGATGGCGCC
CAGGATAAACTCCTCAAGATTGTGATGCGACTTTTTGAGCGAATTGTTGA
TATGAGCAAGCCCTTCAACATCACTCTACTAGGCCTCGCATTCTCCAAGT
TCCAGGAGCGCAAGGTTGGCTCCTCATCAATTGCTAATTTCCTGATCAAA
AAGGCGGATCTGGAGGTGCAGTCTATCACCTCACTGACAAATACGAGTCT
CACAAGTCCCACAGCGGAGAGTCCCACATCAGACGAGTGCGCCTTCCGCT
CCTCGCCAACAACATTCAAACCCAGCGATCAGTTCTATAGGAGAAGAGCC
ACTACTGCATCACCTGTGCCCATGCTACTTGATAATGGTTCCGAATCAGC
GGCCACCAATTCGGATTTCAGCGACTTCTCTGAGACTGAGGTGGAACCCT
CGCCGAAAAAGAGTCGCATTGGCCGATTACTTGTTTCTAAGCGCAGCCGC
TTGGCGGCGGATGTGGGAGATTCCGCCGCCGAAGTAGCTTCGCCCAGCAA
ACTGCGTGTCTGTGATCTGCGCCTCAACTCGCGGGATAGCGAGAAAGACT
TTCCCATGAGCACCACGCCTTCTACCTCTACGTCCGCGCCTGCGCCTCGC
TTCCGCACCGTCCAGCCACCAAACACGTTGCTGCAACGGATCGACGGCAG
TCTACGCTTTGTTACGACGCGCACTGCCAGTCGCTTGAGCTCAAATGCTA
GTTCTACGGCATCCTCGCCGCTTCCTTCTCCCATGGACGACTCCATAGCC
ATGAGCGCACCCAGCACAACAACCTTGCCATTTCCCTCACCCACCACGAC
AGCGGTGGTCACCAGCAGTAGTAGTACGGCCACGTGTGATGCCCTAACGA
ATATAGTTTGTCCAGCGGGTGTGGATGCCGAGGTGTTCAAAGAGCTACCC
GTGGAGCTGCAGACGGAGTTGATCGCATCGTGGCGCAGCTCCCTGGTGGC
GGCTGTTGAGCAAACGAATGGGACCGGTGCCGCTACAAGCGCAGCTATCG
CCAGTGGAGCCCCAGCAACTGCCACAACCGCCAGCGGACAAAAGAACACT
TTGTATCGCTACTTTCTCCGGAATAAGTGAAAGCTTTCTAGACCAT
BS08063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 2214 | CG7602-PC | 1..2214 | 17..2230 | 11070 | 100 | Plus |
| DNApol-iota-RA | 2214 | CG7602-PA | 1..2214 | 17..2230 | 11070 | 100 | Plus |
| DNApol-iota-RB | 2214 | CG7602-PB | 1..2214 | 17..2230 | 11070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 3144 | CG7602-RC | 85..2298 | 17..2230 | 11070 | 100 | Plus |
| DNApol-iota-RA | 2622 | CG7602-RA | 150..2363 | 17..2230 | 11070 | 100 | Plus |
| DNApol-iota-RB | 2544 | CG7602-RB | 72..2285 | 17..2230 | 11070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8235287..8236543 | 974..2230 | 6285 | 100 | Plus |
| 3R | 32079331 | 3R | 8234266..8235224 | 17..975 | 4795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:41:26 has no hits.
BS08063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:58 Download gff for
BS08063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RA | 1..2214 | 17..2230 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:58 Download gff for
BS08063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RA | 103..2315 | 17..2229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:00 Download gff for
BS08063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 72..2284 | 17..2229 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:58 Download gff for
BS08063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RA | 99..2319 | 13..2234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:20 Download gff for
BS08063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 72..2284 | 17..2229 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:20 Download gff for
BS08063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8234266..8235222 | 17..973 | 100 | -> | Plus |
| 3R | 8235287..8236542 | 974..2229 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:00 Download gff for
BS08063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4059988..4060944 | 17..973 | 100 | -> | Plus |
| arm_3R | 4061009..4062264 | 974..2229 | 100 | | Plus |
BS08063.pep Sequence
Translation from 16 to 2229
> BS08063.pep
MDFASVLGKSEAHQRTIIHLDMDYFYAQVEEIRDPTLRSKALGIQQKNIV
VTCNYVARAKGVTKLMLIAEAQRICPDLVLVNGEDLAPYRQMSQRIFDLL
LNYTPLVEKLGFDENFMDVTALVELRQAHVAEALLRPPVGHTYPADGTPL
SNCDCGCAQRLAIGTRIAQEIREELKLRLGITCCAGIAYNKLLAKLVGSS
HEPNQQTVLVSTYAEQFMRELGDLKRVTGIGQKTQCLLLEAGMSSVEQLQ
QCDMDVMRKKFGFETATRLRDLAFGRDTSLVRPSGKPKTIGMEDACKPIS
VRTDVEERFRMLLKRLVEQVAEDGRVPIAIKVVLRKFDSQKKSSHRETKQ
ANILPSLFKTSMCPGETGVSKVQLADGAQDKLLKIVMRLFERIVDMSKPF
NITLLGLAFSKFQERKVGSSSIANFLIKKADLEVQSITSLTNTSLTSPTA
ESPTSDECAFRSSPTTFKPSDQFYRRRATTASPVPMLLDNGSESAATNSD
FSDFSETEVEPSPKKSRIGRLLVSKRSRLAADVGDSAAEVASPSKLRVCD
LRLNSRDSEKDFPMSTTPSTSTSAPAPRFRTVQPPNTLLQRIDGSLRFVT
TRTASRLSSNASSTASSPLPSPMDDSIAMSAPSTTTLPFPSPTTTAVVTS
SSSTATCDALTNIVCPAGVDAEVFKELPVELQTELIASWRSSLVAAVEQT
NGTGAATSAAIASGAPATATTASGQKNTLYRYFLRNK*
BS08063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-PC | 737 | CG7602-PC | 1..737 | 1..737 | 3699 | 100 | Plus |
| DNApol-iota-PA | 737 | CG7602-PA | 1..737 | 1..737 | 3699 | 100 | Plus |
| DNApol-iota-PB | 737 | CG7602-PB | 1..737 | 1..737 | 3699 | 100 | Plus |
| DNApol-eta-PA | 885 | CG7143-PA | 14..346 | 13..305 | 314 | 29.1 | Plus |
