Clone BS08064 Report

Search the DGRC for BS08064

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptncd-RA
Protein status:BS08064.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08064.3prime Sequence

966 bp (793 high quality bases) assembled on 2006-01-06

> BS08064.3prime
ATGGTCTAGAAAGCTTTTATTTATCGAAACTGCCGCTGTTGTTGCTCTGT
GTGCTGCTGTTGGCCACCGAGTTGTTCAGGTAGCGATTCCGCTTGGCCTT
GGTCATTTTGCAGGAGTTTACGGAGGCCGCGAAGCGCAGCGACTTGACGG
ACTCTTGGAAACAGTCTTGGAACGGCGAGACGTTGATGAACATAAGCGTT
TTCGAGTTGCCGCCCAGCGAGGGCATCAGCAGGTGCGTCAGCTTGGAGTT
CCTGTACGGGATGTGGTCCTGCTTCTGCAGCAGCGCCAGGATTACGTTGG
TGAGCTCCGATAGCGAGCGATTGATGTTCTTTGTCTCGGTCATCCGGGTG
CTCGTCTTGGGAGACTCAGAGCCGGCCAAATCCACCAGGTTTATGGAACC
CACGGAGATCTCTTGCTTTTCGGCATGGCGTCCGATGAGCTCAAGCTTGG
TAACCGCGTGGGAACGAGAGGAGCGCTCGTTGCCAGCTGTCGAGGCGGTG
GCACGGTTCATCTTGGCCGTGTGCATGAGGTGGCGCAGGTGATTTGGATC
CAGAACCGTCTCCTCCGTTATGTTGGACACGTAGATGTCGTTCTTGTTGT
TCTTGGCCATTCGAATCTCCATGTCCTTCTGCTCGTTGCTCAGCAGATCG
TAGAGCACCTCGTTGTAGATCTCCAGAAAGGTGGCCTTGATCTCGTACTC
CCAGCCCAAGTTGCGATATCCCCGGATGGAGTCGAAGAGCAGATCCACCG
TGCGCGGTATGACGCCCACACTCTCCGGCACTCCGTCCATTGTGTAGGTC
TTGCCACTGCCCGTCTGTCCGTANGCAAAGATGCAGATATTGTAGCCATC
CAGGGCCGACTGGATGAGCGGCGAGACCATCTCGAAGATGTCCGACTGCG
AGGAGAGCGGGTGGAAGACTGGTCGAATGAGAAGATCTGCCTGGCCATCT
TGCCTTTGGGCTGTGC

BS08064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7831-PA 2103 ncd-RA 1201..2103 919..17 4496 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
ncd-RB 2720 CG7831-RB 1654..2605 966..16 4649 99.4 Minus
ncd-RA 2340 CG7831-RA 1274..2225 966..16 4649 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29804405..29805356 16..966 4624 99.3 Plus
Blast to na_te.dros performed 2015-02-10 23:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 41..148 132..30 132 62.4 Minus
TART-A 13424 TART-A 13424bp 11219..11326 132..30 132 62.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6684..6779 107..13 126 61.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6800 62..13 121 74 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6838 118..30 121 59.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6805 62..30 120 84.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2432 62..15 114 70.8 Minus
roo 9092 roo DM_ROO 9092bp 1112..1144 62..30 111 81.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2354 62..30 110 88.2 Minus

BS08064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:29 Download gff for BS08064.3prime
Subject Subject Range Query Range Percent Splice Strand
ncd-PA 1153..2103 17..966 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:15 Download gff for BS08064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7831-PA 1153..2103 17..966 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:32:28 Download gff for BS08064.3prime
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 1274..2236 8..966 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:48:33 Download gff for BS08064.3prime
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 1274..2236 8..966 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:48:33 Download gff for BS08064.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29804394..29805356 8..966 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:32:28 Download gff for BS08064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25630116..25631078 8..966 98   Plus

BS08064.5prime Sequence

963 bp (801 high quality bases) assembled on 2006-01-06

> BS08064.5prime
GAAGTTATCAGTCGACATGGAATCCCGGCTACCGAAACCGTCGGGCCTGA
AGAAACCCCAAATGCCGATTAAAACCGTGCTGCCCACAGATCGAATTCGC
GCAGGATTGGGAGGTGGAGCCGCTGGAGCAGGCGCCTTCAATGTCAATGC
CAACCAGACATACTGCGGCAACTTATTGCCGCCCCTCTCAAGGGACCTCA
ACAATCTGCCCCAGGTGCTGGAGCGTCGCGGAGGAGGAGCACGTGCCGCC
TCCCCAGAGCCCATGAAGTTGGGCCACCGGGCCAAGCTGAGACGTAGCCG
TAGCGCTTGCGACATCAACGAACTGCGTGGTAACAAGCGCACTGCGGCTG
CTCCTTCATTGCCCAGCATTCCCAGCAAAGTATCCCGCCTGGGCGGTGCA
CTCACTGTTTCCAGCCAGCGACTAGTGCGTCCTGCGGCGCCTTCGTCAAT
AACAGCAACAGCTGTCAAAAGACCACCAGTAACGCGTCCTGCTCCACGGG
CTGCAGGAGGAGCAGCCGCCAAGAAACCAGCAGGAACAGGAGCAGCAGCT
TCGTCAGGAGCCGCGGCTGCTGCTCCCAAGCGCATCGCTCCCTACGACTT
CAAGGCCCGCTTCCACGATCTGCTAGAGAAGCACAAGGTGCTTAAGACAA
AGTACGAAAAGCAAACAGAGGACATGGGCGAGCTGGAGTCCATGCCTCAG
CAACTGGAGGAGACGCAGAACAAGCTTATCGAGACGGAGTCCTCGCTGAA
GAACACCCAGAGCGACAACGAGTGTCTTCAGAGGCAGGTGAAGCAGCATA
CCGCCAAAATTGAAACAATCACATCGACGCTGGGCAGGACCAAAGAGGAG
CTATCCGAGCTGCAAGCAATACATGAGAAAGTAAAAACGGAGCATGCTGC
TCTAAGCACAGAAGTGGTGCATCTGCGCCAGCGCACCGAGGAACTCCTGC
GCTGCAATGAGCA

BS08064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7831-PA 2103 ncd-RA 1..947 17..963 4735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
ncd-RB 2720 CG7831-RB 502..1448 17..963 4735 100 Plus
ncd-RA 2340 CG7831-RA 122..1068 17..963 4735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29805707..29806346 877..238 3200 100 Minus
3R 32079331 3R 29806404..29806626 239..17 1115 100 Minus
3R 32079331 3R 29805562..29805649 963..876 440 100 Minus
Blast to na_te.dros performed 2015-02-11 12:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2729..2880 416..573 136 57 Plus

BS08064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:31 Download gff for BS08064.5prime
Subject Subject Range Query Range Percent Splice Strand
ncd-PA 1..946 17..962 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:16 Download gff for BS08064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7831-PA 1..946 17..962 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:12 Download gff for BS08064.5prime
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 113..1067 9..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:53:56 Download gff for BS08064.5prime
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 113..1067 9..962 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:56 Download gff for BS08064.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29805563..29805647 878..962 100 <- Minus
3R 29805707..29806344 240..877 100 <- Minus
3R 29806404..29806632 11..239 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:12 Download gff for BS08064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25631285..25631369 878..962 100 <- Minus
arm_3R 25631429..25632066 240..877 100 <- Minus
arm_3R 25632126..25632354 11..239 98 <- Minus

BS08064.complete Sequence

2135 bp assembled on 2008-01-03

GenBank Submission: FJ636086

> BS08064.complete
GAAGTTATCAGTCGACATGGAATCCCGGCTACCGAAACCGTCGGGCCTGA
AGAAACCCCAAATGCCGATTAAAACCGTGCTGCCCACAGATCGAATTCGC
GCAGGATTGGGAGGTGGAGCCGCTGGAGCAGGCGCCTTCAATGTCAATGC
CAACCAGACATACTGCGGCAACTTATTGCCGCCCCTCTCAAGGGACCTCA
ACAATCTGCCCCAGGTGCTGGAGCGTCGCGGAGGAGGAGCACGTGCCGCC
TCCCCAGAGCCCATGAAGTTGGGCCACCGGGCCAAGCTGAGACGTAGCCG
TAGCGCTTGCGACATCAACGAACTGCGTGGTAACAAGCGCACTGCGGCTG
CTCCTTCATTGCCCAGCATTCCCAGCAAAGTATCCCGCCTGGGCGGTGCA
CTCACTGTTTCCAGCCAGCGACTAGTGCGTCCTGCGGCGCCTTCGTCAAT
AACAGCAACAGCTGTCAAAAGACCACCAGTAACGCGTCCTGCTCCACGGG
CTGCAGGAGGAGCAGCCGCCAAGAAACCAGCAGGAACAGGAGCAGCAGCT
TCGTCAGGAGCCGCGGCTGCTGCTCCCAAGCGCATCGCTCCCTACGACTT
CAAGGCCCGCTTCCACGATCTGCTAGAGAAGCACAAGGTGCTTAAGACAA
AGTACGAAAAGCAAACAGAGGACATGGGCGAGCTGGAGTCCATGCCTCAG
CAACTGGAGGAGACGCAGAACAAGCTTATCGAGACGGAGTCCTCGCTGAA
GAACACCCAGAGCGACAACGAGTGTCTTCAGAGGCAGGTGAAGCAGCATA
CCGCCAAAATTGAAACAATCACATCGACGCTGGGCAGGACCAAAGAGGAG
CTATCCGAGCTGCAAGCAATACATGAGAAAGTAAAAACGGAGCATGCTGC
TCTAAGCACAGAAGTGGTGCATCTGCGCCAGCGCACCGAGGAACTCCTGC
GCTGCAATGAGCAGCAGGCCGCCGAGCTGGAGACCTGCAAAGAGCAGCTC
TTCCAGTCGAACATGGAGCGCAAAGAGCTGCACAACACGGTCATGGACCT
GCGCGGCAACATCCGGGTCTTCTGTCGAATACGACCGCCGCTGGAGTCCG
AGGAGAACCGTATGTGTTGCACCTGGACCTATCACGACGAGTCCACCGTG
GAGCTGCAGAGCATTGACGCACAGGCCAAAAGCAAGATGGGCCAGCAGAT
CTTCTCATTCGACCAGGTCTTCCACCCGCTCTCCTCGCAGTCGGACATCT
TCGAGATGGTCTCGCCGCTCATCCAGTCGGCCCTGGATGGCTACAATATC
TGCATCTTTGCCTACGGACAGACGGGCAGTGGCAAGACCTACACAATGGA
CGGAGTGCCGGAGAGTGTGGGCGTCATACCGCGCACGGTGGATCTGCTCT
TCGACTCCATCCGGGGATATCGCAACTTGGGCTGGGAGTACGAGATCAAG
GCCACCTTTCTGGAGATCTACAACGAGGTGCTCTACGATCTGCTGAGCAA
CGAGCAGAAGGACATGGAGATTCGAATGGCCAAGAACAACAAGAACGACA
TCTACGTGTCCAACATAACGGAGGAGACGGTTCTGGATCCAAATCACCTG
CGCCACCTCATGCACACGGCCAAGATGAACCGTGCCACCGCCTCGACAGC
TGGCAACGAGCGCTCCTCTCGTTCCCACGCGGTTACCAAGCTTGAGCTCA
TCGGACGCCATGCCGAAAAGCAAGAGATCTCCGTGGGTTCCATAAACCTG
GTGGATTTGGCCGGCTCTGAGTCTCCCAAGACGAGCACCCGGATGACCGA
GACAAAGAACATCAATCGCTCGCTATCGGAGCTCACCAACGTAATCCTGG
CGCTGCTGCAGAAGCAGGACCACATCCCGTACAGGAACTCCAAGCTGACG
CACCTGCTGATGCCCTCGCTGGGCGGCAACTCGAAAACGCTTATGTTCAT
CAACGTCTCGCCGTTCCAAGACTGTTTCCAAGAGTCCGTCAAGTCGCTGC
GCTTCGCGGCCTCCGTAAACTCCTGCAAAATGACCAAGGCCAAGCGGAAT
CGCTACCTGAACAACTCGGTGGCCAACAGCAGCACACAGAGCAACAACAG
CGGCAGTTTCGATAAATAAAAGCTTTCTAGACCAT

BS08064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
ncd-RB 2103 CG7831-PB 1..2103 17..2119 10515 100 Plus
ncd-RA 2103 CG7831-PA 1..2103 17..2119 10515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
ncd-RB 2720 CG7831-RB 502..2605 17..2120 10520 100 Plus
ncd-RA 2340 CG7831-RA 122..2225 17..2120 10520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29804405..29805649 2120..876 6225 100 Minus
3R 32079331 3R 29805707..29806346 877..238 3200 100 Minus
3R 32079331 3R 29806404..29806626 239..17 1115 100 Minus
Blast to na_te.dros performed 2014-11-28 01:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2729..2880 416..573 136 57 Plus
TART-A 13424 TART-A 13424bp 41..148 2004..2106 132 62.4 Plus
TART-A 13424 TART-A 13424bp 11219..11326 2004..2106 132 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6684..6779 2029..2123 126 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6838 2018..2106 121 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6800 2074..2123 121 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6805 2074..2106 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2432 2074..2121 114 70.8 Plus

BS08064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:08:59 Download gff for BS08064.complete
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 1..2103 17..2119 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:14 Download gff for BS08064.complete
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 502..2596 17..2111 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:23 Download gff for BS08064.complete
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 122..2216 17..2111 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:08:59 Download gff for BS08064.complete
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 493..2616 9..2128 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:51 Download gff for BS08064.complete
Subject Subject Range Query Range Percent Splice Strand
ncd-RA 122..2216 17..2111 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:51 Download gff for BS08064.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29804414..29805647 878..2111 100 <- Minus
3R 29805707..29806344 240..877 100 <- Minus
3R 29806404..29806626 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:23 Download gff for BS08064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25630136..25631369 878..2111 100 <- Minus
arm_3R 25631429..25632066 240..877 100 <- Minus
arm_3R 25632126..25632348 17..239 100   Minus

BS08064.pep Sequence

Translation from 16 to 2118

> BS08064.pep
MESRLPKPSGLKKPQMPIKTVLPTDRIRAGLGGGAAGAGAFNVNANQTYC
GNLLPPLSRDLNNLPQVLERRGGGARAASPEPMKLGHRAKLRRSRSACDI
NELRGNKRTAAAPSLPSIPSKVSRLGGALTVSSQRLVRPAAPSSITATAV
KRPPVTRPAPRAAGGAAAKKPAGTGAAASSGAAAAAPKRIAPYDFKARFH
DLLEKHKVLKTKYEKQTEDMGELESMPQQLEETQNKLIETESSLKNTQSD
NECLQRQVKQHTAKIETITSTLGRTKEELSELQAIHEKVKTEHAALSTEV
VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIR
VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQ
VFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES
VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM
EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS
SRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNIN
RSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF
QDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANSSTQSNNSGSFDK
*

BS08064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
ncd-PB 700 CG7831-PB 1..700 1..700 3568 100 Plus
ncd-PA 700 CG7831-PA 1..700 1..700 3568 100 Plus
Klp68D-PB 784 CG7293-PB 24..343 351..669 518 37.6 Plus
Klp68D-PA 784 CG7293-PA 24..343 351..669 518 37.6 Plus
Klp64D-PA 677 CG10642-PA 20..347 348..665 469 35.8 Plus