Clone BS08067 Report

Search the DGRC for BS08067

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG11905-RA
Protein status:BS08067.pep: full length peptide match
Sequenced Size:1856

Clone Sequence Records

BS08067.3prime Sequence

964 bp (772 high quality bases) assembled on 2006-01-06

> BS08067.3prime
ATGGTCTAGAAAGCTTTTAGGACTCGAACTGGCCCGTCTCCAGCCCCGCC
CCCTGATCCGCCTCCATGGTTGTTGTGCCCGTGGGTGGAGCATAGTAGAC
CGTTGGTCCTGTAGCCACTATCTTTCCCTCTCGCGGAAAACTTCTCGTCT
CCAGATCGGTGCGTGCCAGGGCATCTTTAAGGTCCACATCTGCCGGTATG
GAGATCACCTTGGCCCCGGGACCGGCGATGGTGAGACTCCGTGGATGGGT
GAGAGCATAGCCACCGGGACCAACAATCGCCGTTCCTCCGCTGCCCGCCG
TGGCCACGCCCCCGGGTCCTGCGATAGCGATGCCGCCCCTGCGAACCTTT
AGCCGCTGAATGATGATTCCTCCTTCGCGCAATGCCTGCTTTTGGGTGCT
TTCCTGAGCGGTGGCCACCTGGCTCACAGTGTGCATCAGGTGATGGCCCT
TGTGAGCAAACAAGTGCTTCTCTGAGGAGGCACTGTTGTCCAGTTCCGCG
GCTGTGTTCTCAATGGTATCCACATCATCGGCCATCCCATCGCCGGCGCC
CTCGTTTTCATCCTCCCATTTATAATCCATCGAATCGATTGAGTGATTCT
TCACAGGAACATTGCCAACAACCACAGGACCTTCTCCAGCTGTGGCCGCC
ATTGGAGGTCGGAAGGGGAGCTTGAAAATGTTTTGAAAGGCATTCTTGAT
GGCAGTCGAGGTCTGATTCTGCATCTCAGCTATATTCATTCCGGGCATGC
GGAATGGACTTAAGCGATTCCGATTGGGCAGCAAGCCACCAGATGGTGGT
AAAGTAGAACTCAACAGGACAGGCGCAGATGTAGCCTTGATATTAAGGGA
TGTGGATCCCTGNTAGATTTGCTGTTCAGCATCCTTTCCACTCAAGCGAA
CGGGTTTCGCTGTGGAACCAACCTTCTTTCTGTCAAAGAATTTAATCCCG
GTGACGAAGTGGGC

BS08067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PA 1824 CG11905-RA 908..1824 933..17 4566 99.8 Minus
CG11905-PG 1824 CG11905-RG 908..1824 933..17 4566 99.8 Minus
CG11905-PD 1824 CG11905-RD 908..1824 933..17 4566 99.8 Minus
CG11905-PA 1824 CG11905-RA 876..907 964..933 135 96.8 Minus
CG11905-PG 1824 CG11905-RG 876..907 964..933 135 96.8 Minus
CG11905-PD 1824 CG11905-RD 876..907 964..933 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RD 2251 CG11905-RD 1204..2152 964..17 4694 99.7 Minus
CG11905-RG 2069 CG11905-RG 1022..1970 964..17 4694 99.7 Minus
CG11905-RA 2192 CG11905-RA 1145..2093 964..17 4694 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16931271..16932219 17..964 4669 99.7 Plus
Blast to na_te.dros performed 2015-02-10 23:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3248..3285 885..848 111 76.3 Minus

BS08067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:34 Download gff for BS08067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-PA 876..1824 17..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:20 Download gff for BS08067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-PD 876..1824 17..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:20 Download gff for BS08067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RG 1022..1970 17..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:41 Download gff for BS08067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 1145..2093 17..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:41 Download gff for BS08067.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16931271..16932219 17..964 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:20 Download gff for BS08067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16924371..16925319 17..964 99   Plus

BS08067.5prime Sequence

859 bp (706 high quality bases) assembled on 2006-01-06

> BS08067.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGACTCAACAGCACGGTGGACTGGCCGTCGAA
ATTCACAAGCAGCGGCTGGTCAAATTTCCCGAGGACTTTGAGCCCAATGC
GGCCACTCCGTCCTCGGAAAAGGCGGACGAGGCCAAGCGCATCCTCGAGC
AGATAGCCAAGGTTAACGAGGCCTTTGGCTACGTGAAGAAGCAACCGGAG
CAGCCCAAGCTGCCACCGATCCTTGATTCCAGTCAATACCTGTTCCCCAA
GCCCGCCCATCAGCCATTTCACGCCCATCAGCACCACTTCTCGGGAAGTA
ATGGTCAGACCTTGTTAGAACCCTCAATTAGGGCGGTGAAACTCACAAGA
AATGTGGCGGGCAGTTACAATGTGCCTCCCAGGTTGCGCCAGGCAATTGA
GAGCACCTCCAAGGAGGAGAAGAAAGCGCAACTCTACTTCCGACCCAAAC
AGGTGGAGGTACCGAAGCCGAGTTCCGAACAAGAAGCACAGCAGCTGCCC
GCCCACTTTGTGGTGCCCGTGCACCTGTACAAACTCAATAAAGAGGAGTA
TCTCAAGGAGCACGCCTCGCAGGAATACAAGATAAAGGGATACAAAATCA
TTGGCGATGTGGACAGCTTCTATGGCAAGGCGAAGGCTGGAAGAAAACAG
GGCAAGACGACGCCCAAGTATCACCTGTTCTTCCTGCCCCGAGAACTGGC
TCTCAATGAAGATGGCACCCCAAAAAGGGGTAATTCCACCACCATTGGTA
CGACCACCACAAAGGCTCCAGTGCCTGTGAACTTCAGGGATATCGTTTGG
ACTCCCGCG

BS08067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PA 1824 CG11905-RA 1..820 17..836 4000 99.5 Plus
CG11905-PG 1824 CG11905-RG 1..820 17..836 4000 99.5 Plus
CG11905-PD 1824 CG11905-RD 1..820 17..836 4000 99.5 Plus
CG11905-PB 1212 CG11905-RB 1..84 17..100 395 98.8 Plus
CG11905-PF 1212 CG11905-RF 1..84 17..100 395 98.8 Plus
CG11905-PC 948 CG11905-RC 1..83 17..99 390 98.7 Plus
CG11905-PE 948 CG11905-RE 1..83 17..99 390 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RD 2251 CG11905-RD 329..1172 17..859 4120 99.3 Plus
CG11905-RG 2069 CG11905-RG 147..990 17..859 4120 99.3 Plus
CG11905-RA 2192 CG11905-RA 270..1113 17..859 4120 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16932251..16933011 859..100 3695 99.3 Minus
3L 28110227 3L 16933293..16933360 99..32 325 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 23:10:53 has no hits.

BS08067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:35 Download gff for BS08067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-PG 1..844 17..859 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:22 Download gff for BS08067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-PA 1..844 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:43 Download gff for BS08067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 264..1113 11..859 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:26 Download gff for BS08067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 264..1113 11..859 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:26 Download gff for BS08067.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16932251..16933011 100..859 99 <- Minus
3L 16933293..16933360 32..99 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:43 Download gff for BS08067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16926393..16926460 32..99 98 <- Minus
arm_3L 16925351..16926111 100..859 99 <- Minus

BS08067.complete Sequence

1856 bp assembled on 2009-08-24

GenBank Submission: KX802875

> BS08067.complete
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAA
ATTCAGAAGCAGCGGCTGGTCAAATTTCCCGAGGACTTTGAGCCCAATGC
GGCCACTCCGTCCTCGGAAAAGGCGGACGAGGCCAAGCGCATCCTCGAGC
AGATAGCCAAGGTTAACGAGGCCTTTGGCTACGTGAAGAAGCAGCCGGAG
CAGCCCAAGCTGCCACCGATCCTTGATTCCAGTCAATACCTGTTCCCCAA
GCCCGCCCATCAGCCATTTCACGCCCATCAGCACCACTTCTCGGGAAGTA
ATGGTCAGACCTTGTTAGAACCCTCAATTAGGGCGGTGAAACTCACAAGA
AATGTGGCGGGCAGTTACAATGTGCCTCCCAGGTTGCGCCAGGCAATTGA
GAGCACCTCCAAGGAGGAGAAGAAAGCGCAACTCTACTTCCGACCCAAAC
AGGTGGAGGTACCGAAGCCGAGTTCCGAACAAGAAGCACAGCAGCTGCCC
GCCCACTTTGTGGTGCCCGTGCACCTGTACAAACTCAATAAGGAGGAGTA
TCTCAAGGAGCACGCCTCGCAGGAATACAAGATAAAGGGATACAAAATCA
TTGGCGATGTGGACAGCTTCTATGGCAAGGCGAAGGCTGGAAGAAAACAG
GGCAAGACGACGCCCAAGTATCACCTGTTCTTCCTGCCCCGAGAACTGGC
TCTCAATGAAGATGGCACCCCAAAAAGGGGTAATTCCACCACCATTGGTA
CGACCACCACAAAGGCTCCAGTGCCTGTGAACTTCAAGGAATATCGTTTG
GACTCCCGCGAGAAGCCCGTGCATAAGCCACAGAAGATTCAGCCCACTTC
GTCACCGGAATTAAATTCTTTGAACAGAAAGAAGGTTGGTTCCACAGCGA
AACCCGTTCGCTTGAGTGGAAAGGATGCTGAACAGCAAATCTACCAGGGA
TCCACATCCCTTAATATCAAGGCTACATCTGCGCCTGTCCTGTTGAGTTC
TACTTTACCACCATCTGGTGGCTTGCTGCCCAATCGGAATCGCTTAAGTC
CATTCCGCATGCCCGGAATGAATATAGCTGAGATGCAGAATCAGACCTCG
ACTGCCATCAAGAATGCCTTTCAAAACATTTTCAAGCTCCCCTTCCGACC
TCCAATGGCGGCCACAGCTGGAGAAGGTCCTGTGGTTGTTGGCAATGTTC
CTGTGAAGAATCACTCAATCGATTCGATGGATTATAAATGGGAGGATGAA
AACGAGGGCGCCGGCGATGGGATGGCCGATGATGTGGATACCATTGAGAA
CACAGCCGCGGAACTGGACAACAGTGCCTCCTCAGAGAAGCACTTGTTTG
CTCACAAGGGCCATCACCTGATGCACACTGTGAGCCAGGTGGCCACCGCT
CAGGAAAGCACCCAAAAGCAGGCATTGCGCGAAGGAGGAATCATCATTCA
GCGGCTAAAGGTTCGCAGGGGCGGCATCGCTATCGCAGGACCCGGGGGCG
TGGCCACGGCGGGCAGCGGAGGAACGGCGATTGTTGGTCCCGGTGGCTAT
GCTCTCACCCATCCACGGAGTCTCACCATCGCCGGTCCCGGGGCCAAGGT
GATCTCCATACCGGCAGATGTGGACCTTAAAGATGCCCTGGCACGCACCG
ATCTGGAGACGAGAAGTTTTCCGCGAGAGGGAAAGATAGTGGCTACAGGA
CCAACGGTCTACTATGCTCCACCCACGGGCACAACAACCATGGAGGCGGA
TCAGGGGGCGGGGCTGGAGACGGGCCAGTTCGAGTCCTAAAAGCTTTCTA
GACCAT

BS08067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RD 1824 CG11905-PD 1..1824 17..1840 9120 100 Plus
CG11905-RG 1824 CG11905-PG 1..1824 17..1840 9120 100 Plus
CG11905-RA 1824 CG11905-PA 1..1824 17..1840 9120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-RD 2251 CG11905-RD 329..2152 17..1840 9120 100 Plus
CG11905-RG 2069 CG11905-RG 147..1970 17..1840 9120 100 Plus
CG11905-RA 2192 CG11905-RA 270..2093 17..1840 9120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16931271..16933011 1840..100 8705 100 Minus
3L 28110227 3L 16933293..16933360 99..32 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:30:25 has no hits.

BS08067.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:17 Download gff for BS08067.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RD 306..2127 17..1838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:36 Download gff for BS08067.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 270..2091 17..1838 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:13 Download gff for BS08067.complete
Subject Subject Range Query Range Percent Splice Strand
CG11905-RA 270..2091 17..1838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:13 Download gff for BS08067.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16931273..16933011 100..1838 100 <- Minus
3L 16933293..16933360 32..99 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:36 Download gff for BS08067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16924373..16926111 100..1838 100 <- Minus
arm_3L 16926393..16926460 32..99 100 <- Minus

BS08067.pep Sequence

Translation from 16 to 1839

> BS08067.pep
MRFLVLSTLLLASLALGQAQQHGGLAVEIQKQRLVKFPEDFEPNAATPSS
EKADEAKRILEQIAKVNEAFGYVKKQPEQPKLPPILDSSQYLFPKPAHQP
FHAHQHHFSGSNGQTLLEPSIRAVKLTRNVAGSYNVPPRLRQAIESTSKE
EKKAQLYFRPKQVEVPKPSSEQEAQQLPAHFVVPVHLYKLNKEEYLKEHA
SQEYKIKGYKIIGDVDSFYGKAKAGRKQGKTTPKYHLFFLPRELALNEDG
TPKRGNSTTIGTTTTKAPVPVNFKEYRLDSREKPVHKPQKIQPTSSPELN
SLNRKKVGSTAKPVRLSGKDAEQQIYQGSTSLNIKATSAPVLLSSTLPPS
GGLLPNRNRLSPFRMPGMNIAEMQNQTSTAIKNAFQNIFKLPFRPPMAAT
AGEGPVVVGNVPVKNHSIDSMDYKWEDENEGAGDGMADDVDTIENTAAEL
DNSASSEKHLFAHKGHHLMHTVSQVATAQESTQKQALREGGIIIQRLKVR
RGGIAIAGPGGVATAGSGGTAIVGPGGYALTHPRSLTIAGPGAKVISIPA
DVDLKDALARTDLETRSFPREGKIVATGPTVYYAPPTGTTTMEADQGAGL
ETGQFES*

BS08067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11905-PD 607 CG11905-PD 1..607 1..607 3124 100 Plus
CG11905-PG 607 CG11905-PG 1..607 1..607 3124 100 Plus
CG11905-PA 607 CG11905-PA 1..607 1..607 3124 100 Plus