Clone Sequence Records
BS08067.3prime Sequence
964 bp (772 high quality bases) assembled on 2006-01-06
> BS08067.3prime
ATGGTCTAGAAAGCTTTTAGGACTCGAACTGGCCCGTCTCCAGCCCCGCC
CCCTGATCCGCCTCCATGGTTGTTGTGCCCGTGGGTGGAGCATAGTAGAC
CGTTGGTCCTGTAGCCACTATCTTTCCCTCTCGCGGAAAACTTCTCGTCT
CCAGATCGGTGCGTGCCAGGGCATCTTTAAGGTCCACATCTGCCGGTATG
GAGATCACCTTGGCCCCGGGACCGGCGATGGTGAGACTCCGTGGATGGGT
GAGAGCATAGCCACCGGGACCAACAATCGCCGTTCCTCCGCTGCCCGCCG
TGGCCACGCCCCCGGGTCCTGCGATAGCGATGCCGCCCCTGCGAACCTTT
AGCCGCTGAATGATGATTCCTCCTTCGCGCAATGCCTGCTTTTGGGTGCT
TTCCTGAGCGGTGGCCACCTGGCTCACAGTGTGCATCAGGTGATGGCCCT
TGTGAGCAAACAAGTGCTTCTCTGAGGAGGCACTGTTGTCCAGTTCCGCG
GCTGTGTTCTCAATGGTATCCACATCATCGGCCATCCCATCGCCGGCGCC
CTCGTTTTCATCCTCCCATTTATAATCCATCGAATCGATTGAGTGATTCT
TCACAGGAACATTGCCAACAACCACAGGACCTTCTCCAGCTGTGGCCGCC
ATTGGAGGTCGGAAGGGGAGCTTGAAAATGTTTTGAAAGGCATTCTTGAT
GGCAGTCGAGGTCTGATTCTGCATCTCAGCTATATTCATTCCGGGCATGC
GGAATGGACTTAAGCGATTCCGATTGGGCAGCAAGCCACCAGATGGTGGT
AAAGTAGAACTCAACAGGACAGGCGCAGATGTAGCCTTGATATTAAGGGA
TGTGGATCCCTGNTAGATTTGCTGTTCAGCATCCTTTCCACTCAAGCGAA
CGGGTTTCGCTGTGGAACCAACCTTCTTTCTGTCAAAGAATTTAATCCCG
GTGACGAAGTGGGC
BS08067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PA | 1824 | CG11905-RA | 908..1824 | 933..17 | 4566 | 99.8 | Minus |
CG11905-PG | 1824 | CG11905-RG | 908..1824 | 933..17 | 4566 | 99.8 | Minus |
CG11905-PD | 1824 | CG11905-RD | 908..1824 | 933..17 | 4566 | 99.8 | Minus |
CG11905-PA | 1824 | CG11905-RA | 876..907 | 964..933 | 135 | 96.8 | Minus |
CG11905-PG | 1824 | CG11905-RG | 876..907 | 964..933 | 135 | 96.8 | Minus |
CG11905-PD | 1824 | CG11905-RD | 876..907 | 964..933 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RD | 2251 | CG11905-RD | 1204..2152 | 964..17 | 4694 | 99.7 | Minus |
CG11905-RG | 2069 | CG11905-RG | 1022..1970 | 964..17 | 4694 | 99.7 | Minus |
CG11905-RA | 2192 | CG11905-RA | 1145..2093 | 964..17 | 4694 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16931271..16932219 | 17..964 | 4669 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-10 23:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3248..3285 | 885..848 | 111 | 76.3 | Minus |
BS08067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:34 Download gff for
BS08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PA | 876..1824 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:20 Download gff for
BS08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PD | 876..1824 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:20 Download gff for
BS08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RG | 1022..1970 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:56:41 Download gff for
BS08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RA | 1145..2093 | 17..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:56:41 Download gff for
BS08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16931271..16932219 | 17..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:20 Download gff for
BS08067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16924371..16925319 | 17..964 | 99 | | Plus |
BS08067.5prime Sequence
859 bp (706 high quality bases) assembled on 2006-01-06
> BS08067.5prime
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGACTCAACAGCACGGTGGACTGGCCGTCGAA
ATTCACAAGCAGCGGCTGGTCAAATTTCCCGAGGACTTTGAGCCCAATGC
GGCCACTCCGTCCTCGGAAAAGGCGGACGAGGCCAAGCGCATCCTCGAGC
AGATAGCCAAGGTTAACGAGGCCTTTGGCTACGTGAAGAAGCAACCGGAG
CAGCCCAAGCTGCCACCGATCCTTGATTCCAGTCAATACCTGTTCCCCAA
GCCCGCCCATCAGCCATTTCACGCCCATCAGCACCACTTCTCGGGAAGTA
ATGGTCAGACCTTGTTAGAACCCTCAATTAGGGCGGTGAAACTCACAAGA
AATGTGGCGGGCAGTTACAATGTGCCTCCCAGGTTGCGCCAGGCAATTGA
GAGCACCTCCAAGGAGGAGAAGAAAGCGCAACTCTACTTCCGACCCAAAC
AGGTGGAGGTACCGAAGCCGAGTTCCGAACAAGAAGCACAGCAGCTGCCC
GCCCACTTTGTGGTGCCCGTGCACCTGTACAAACTCAATAAAGAGGAGTA
TCTCAAGGAGCACGCCTCGCAGGAATACAAGATAAAGGGATACAAAATCA
TTGGCGATGTGGACAGCTTCTATGGCAAGGCGAAGGCTGGAAGAAAACAG
GGCAAGACGACGCCCAAGTATCACCTGTTCTTCCTGCCCCGAGAACTGGC
TCTCAATGAAGATGGCACCCCAAAAAGGGGTAATTCCACCACCATTGGTA
CGACCACCACAAAGGCTCCAGTGCCTGTGAACTTCAGGGATATCGTTTGG
ACTCCCGCG
BS08067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PA | 1824 | CG11905-RA | 1..820 | 17..836 | 4000 | 99.5 | Plus |
CG11905-PG | 1824 | CG11905-RG | 1..820 | 17..836 | 4000 | 99.5 | Plus |
CG11905-PD | 1824 | CG11905-RD | 1..820 | 17..836 | 4000 | 99.5 | Plus |
CG11905-PB | 1212 | CG11905-RB | 1..84 | 17..100 | 395 | 98.8 | Plus |
CG11905-PF | 1212 | CG11905-RF | 1..84 | 17..100 | 395 | 98.8 | Plus |
CG11905-PC | 948 | CG11905-RC | 1..83 | 17..99 | 390 | 98.7 | Plus |
CG11905-PE | 948 | CG11905-RE | 1..83 | 17..99 | 390 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RD | 2251 | CG11905-RD | 329..1172 | 17..859 | 4120 | 99.3 | Plus |
CG11905-RG | 2069 | CG11905-RG | 147..990 | 17..859 | 4120 | 99.3 | Plus |
CG11905-RA | 2192 | CG11905-RA | 270..1113 | 17..859 | 4120 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16932251..16933011 | 859..100 | 3695 | 99.3 | Minus |
3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:10:53 has no hits.
BS08067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:35 Download gff for
BS08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PG | 1..844 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:22 Download gff for
BS08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-PA | 1..844 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:28:43 Download gff for
BS08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RA | 264..1113 | 11..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:26 Download gff for
BS08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RA | 264..1113 | 11..859 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:26 Download gff for
BS08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16932251..16933011 | 100..859 | 99 | <- | Minus |
3L | 16933293..16933360 | 32..99 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:28:43 Download gff for
BS08067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16926393..16926460 | 32..99 | 98 | <- | Minus |
arm_3L | 16925351..16926111 | 100..859 | 99 | <- | Minus |
BS08067.complete Sequence
1856 bp assembled on 2009-08-24
GenBank Submission: KX802875
> BS08067.complete
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGACTGGCCGTCGAA
ATTCAGAAGCAGCGGCTGGTCAAATTTCCCGAGGACTTTGAGCCCAATGC
GGCCACTCCGTCCTCGGAAAAGGCGGACGAGGCCAAGCGCATCCTCGAGC
AGATAGCCAAGGTTAACGAGGCCTTTGGCTACGTGAAGAAGCAGCCGGAG
CAGCCCAAGCTGCCACCGATCCTTGATTCCAGTCAATACCTGTTCCCCAA
GCCCGCCCATCAGCCATTTCACGCCCATCAGCACCACTTCTCGGGAAGTA
ATGGTCAGACCTTGTTAGAACCCTCAATTAGGGCGGTGAAACTCACAAGA
AATGTGGCGGGCAGTTACAATGTGCCTCCCAGGTTGCGCCAGGCAATTGA
GAGCACCTCCAAGGAGGAGAAGAAAGCGCAACTCTACTTCCGACCCAAAC
AGGTGGAGGTACCGAAGCCGAGTTCCGAACAAGAAGCACAGCAGCTGCCC
GCCCACTTTGTGGTGCCCGTGCACCTGTACAAACTCAATAAGGAGGAGTA
TCTCAAGGAGCACGCCTCGCAGGAATACAAGATAAAGGGATACAAAATCA
TTGGCGATGTGGACAGCTTCTATGGCAAGGCGAAGGCTGGAAGAAAACAG
GGCAAGACGACGCCCAAGTATCACCTGTTCTTCCTGCCCCGAGAACTGGC
TCTCAATGAAGATGGCACCCCAAAAAGGGGTAATTCCACCACCATTGGTA
CGACCACCACAAAGGCTCCAGTGCCTGTGAACTTCAAGGAATATCGTTTG
GACTCCCGCGAGAAGCCCGTGCATAAGCCACAGAAGATTCAGCCCACTTC
GTCACCGGAATTAAATTCTTTGAACAGAAAGAAGGTTGGTTCCACAGCGA
AACCCGTTCGCTTGAGTGGAAAGGATGCTGAACAGCAAATCTACCAGGGA
TCCACATCCCTTAATATCAAGGCTACATCTGCGCCTGTCCTGTTGAGTTC
TACTTTACCACCATCTGGTGGCTTGCTGCCCAATCGGAATCGCTTAAGTC
CATTCCGCATGCCCGGAATGAATATAGCTGAGATGCAGAATCAGACCTCG
ACTGCCATCAAGAATGCCTTTCAAAACATTTTCAAGCTCCCCTTCCGACC
TCCAATGGCGGCCACAGCTGGAGAAGGTCCTGTGGTTGTTGGCAATGTTC
CTGTGAAGAATCACTCAATCGATTCGATGGATTATAAATGGGAGGATGAA
AACGAGGGCGCCGGCGATGGGATGGCCGATGATGTGGATACCATTGAGAA
CACAGCCGCGGAACTGGACAACAGTGCCTCCTCAGAGAAGCACTTGTTTG
CTCACAAGGGCCATCACCTGATGCACACTGTGAGCCAGGTGGCCACCGCT
CAGGAAAGCACCCAAAAGCAGGCATTGCGCGAAGGAGGAATCATCATTCA
GCGGCTAAAGGTTCGCAGGGGCGGCATCGCTATCGCAGGACCCGGGGGCG
TGGCCACGGCGGGCAGCGGAGGAACGGCGATTGTTGGTCCCGGTGGCTAT
GCTCTCACCCATCCACGGAGTCTCACCATCGCCGGTCCCGGGGCCAAGGT
GATCTCCATACCGGCAGATGTGGACCTTAAAGATGCCCTGGCACGCACCG
ATCTGGAGACGAGAAGTTTTCCGCGAGAGGGAAAGATAGTGGCTACAGGA
CCAACGGTCTACTATGCTCCACCCACGGGCACAACAACCATGGAGGCGGA
TCAGGGGGCGGGGCTGGAGACGGGCCAGTTCGAGTCCTAAAAGCTTTCTA
GACCAT
BS08067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RD | 1824 | CG11905-PD | 1..1824 | 17..1840 | 9120 | 100 | Plus |
CG11905-RG | 1824 | CG11905-PG | 1..1824 | 17..1840 | 9120 | 100 | Plus |
CG11905-RA | 1824 | CG11905-PA | 1..1824 | 17..1840 | 9120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-RD | 2251 | CG11905-RD | 329..2152 | 17..1840 | 9120 | 100 | Plus |
CG11905-RG | 2069 | CG11905-RG | 147..1970 | 17..1840 | 9120 | 100 | Plus |
CG11905-RA | 2192 | CG11905-RA | 270..2093 | 17..1840 | 9120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16931271..16933011 | 1840..100 | 8705 | 100 | Minus |
3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:30:25 has no hits.
BS08067.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:17 Download gff for
BS08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RD | 306..2127 | 17..1838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:36 Download gff for
BS08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RA | 270..2091 | 17..1838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:13 Download gff for
BS08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11905-RA | 270..2091 | 17..1838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:13 Download gff for
BS08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16931273..16933011 | 100..1838 | 100 | <- | Minus |
3L | 16933293..16933360 | 32..99 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:36 Download gff for
BS08067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16924373..16926111 | 100..1838 | 100 | <- | Minus |
arm_3L | 16926393..16926460 | 32..99 | 100 | <- | Minus |
BS08067.pep Sequence
Translation from 16 to 1839
> BS08067.pep
MRFLVLSTLLLASLALGQAQQHGGLAVEIQKQRLVKFPEDFEPNAATPSS
EKADEAKRILEQIAKVNEAFGYVKKQPEQPKLPPILDSSQYLFPKPAHQP
FHAHQHHFSGSNGQTLLEPSIRAVKLTRNVAGSYNVPPRLRQAIESTSKE
EKKAQLYFRPKQVEVPKPSSEQEAQQLPAHFVVPVHLYKLNKEEYLKEHA
SQEYKIKGYKIIGDVDSFYGKAKAGRKQGKTTPKYHLFFLPRELALNEDG
TPKRGNSTTIGTTTTKAPVPVNFKEYRLDSREKPVHKPQKIQPTSSPELN
SLNRKKVGSTAKPVRLSGKDAEQQIYQGSTSLNIKATSAPVLLSSTLPPS
GGLLPNRNRLSPFRMPGMNIAEMQNQTSTAIKNAFQNIFKLPFRPPMAAT
AGEGPVVVGNVPVKNHSIDSMDYKWEDENEGAGDGMADDVDTIENTAAEL
DNSASSEKHLFAHKGHHLMHTVSQVATAQESTQKQALREGGIIIQRLKVR
RGGIAIAGPGGVATAGSGGTAIVGPGGYALTHPRSLTIAGPGAKVISIPA
DVDLKDALARTDLETRSFPREGKIVATGPTVYYAPPTGTTTMEADQGAGL
ETGQFES*
BS08067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11905-PD | 607 | CG11905-PD | 1..607 | 1..607 | 3124 | 100 | Plus |
CG11905-PG | 607 | CG11905-PG | 1..607 | 1..607 | 3124 | 100 | Plus |
CG11905-PA | 607 | CG11905-PA | 1..607 | 1..607 | 3124 | 100 | Plus |