Clone Sequence Records
BS08068.3prime Sequence
903 bp (856 high quality bases) assembled on 2006-01-06
> BS08068.3prime
ATGGTCTAGAAAGCTTTCACGACAGCGCCACCTCCAGACACATCATGATC
AGGAAGCCGGATACAGTGCCCCACGTGGCGATCGTTCCATTTCCGCTGGC
ATGAGCCTCCGGCAGAATGTCGTCCGACACAATGTATATCATGGCTCCGG
CCGCAAAAGACAAGGCGTATGGCAGGATCAGGTTGGCAAAGGTCACCGCC
ACGGCGCCCAGAACTCCAAAAATGGGCTCCACCATTCCGGACAGCTGTCC
GTACCACAGAGCCCGCTTCACGCTGAATCCTGCGGCATGCAGTGGCAAGC
TGACAGCCAATCCCTCGGGGAAGTTTTGAATGCCAATGCCAATGGCCAAA
TTGCGGGCGCTCTCAAATGTCGATGAGTTCGTGGAGCCAATGGCACCAAA
GCTTACGCCCACAGCCAGCCCTTCTGGAATGTTGTGGACCGTGATGGCCA
CGACCAAAAGCATAATCCTCTTCCACTGGGACAGGGCGTCCTCGGCGCGC
TGCTGCTCCTCAGGCGTGGTGTAGGTGCACTGCTCCATCTCGTTGATGCT
AGCTCCCTTCTTTCGGCGTCTCGATTCGCCGCTGTGCTGCACGCTAAGGC
AGTCGGAGAAGCTGTCCAGACTCTTTGAGGCCAACCTATCGGGGGCAACT
CCATTGCGCTTAGAGTCCTCGATGGCTATGTCCGCCTTGGCTTTTGATTG
CGTCATCTGGATCATCATGTTGGTGCTGTTAAGGCCCAGGTATGACATCA
ATTTGTCGCATCCGTAGACGAAGATCGATCCCAAGAGGAAGCCTCCAGCG
ACGGGCAGAAAGGCGTATACTCCGTACAAATGGGAACTCTCGGCCATTTC
GATGGCCGGGCTGAGGAGTGACCAAAGGAAGCTGCTATCATTACGCCAGC
TGC
BS08068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13189-PA | 1026 | CG13189-RA | 167..1026 | 876..17 | 4250 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip48C-RA | 1878 | CG13189-RA | 584..1471 | 903..17 | 4370 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11900100..11900987 | 903..17 | 4345 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:49:50 has no hits.
BS08068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:36 Download gff for
BS08068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-PA | 139..1026 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:24 Download gff for
BS08068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-PA | 139..1026 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:03:56 Download gff for
BS08068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-RA | 584..1471 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:06 Download gff for
BS08068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip48C-RA | 584..1471 | 17..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:06 Download gff for
BS08068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11900100..11900987 | 17..903 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:03:56 Download gff for
BS08068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7787605..7788492 | 17..903 | 99 | | Minus |
BS08068.5prime Sequence
856 bp (855 high quality bases) assembled on 2006-01-06
> BS08068.5prime
GAAGTTATCAGTCGACATGATTCCAGGCTATGGACCCGTCACGCAGGCTC
TGCTGGGCACCCTGCTTACCTGGGGACTGACCGCCGCTGGCGCCGCCCTA
GTGATCTTCGTCCGGGGTAACCAGCGGAGGTCTCTGGACGCCGCCCTGGG
ATTCGCAGCTGGCGTAATGATAGCAGCCTCCTTTTGGTCACTCCTCAAGC
CGGCCATCGAAATGGCCGAGAGTTCCCATTTGTACGGAGTATACGCCTTT
CTGCCCGTCGCTGGAGGCTTCCTCTTGGGATCGATCTTCGTCTACGGATG
CGACAAATTGATGTCATACCTGGGCCTTAACAGCACCAACATGATGATCC
AGATGACGCAATCAAAAGCCAAGGCGGACATAGCCATCGAGGACTCTAAG
CGCAATGGAGTTGCCCCCGATAGGTTGGCCTCAAAGAGTCTGGACAGCTT
CTCCGACTGCCTTAGCGTGCAGCACAGCGGCGAATCGAGACGCCGAAAGA
AGGGAGCTAGCATCAACGAGATGGAGCAGTGCACCTACACCACGCCTGAG
GAGCAGCAGCGCGCCGAGGACGCCCTGTCCCAGTGGAAGAGGATTATGCT
TTTGGTCGTGGCCATCACGGTCCACAACATTCCAGAAGGGCTGGCTGTGG
GCGTAAGCTTTGGTGCCATTGGCTCCACGAACTCATCGACATTTGAGAGC
GCCCGCAATTTGGCCATTGGCATTGGCATTCAAAACTTCCCCGAGGGATT
GGCTGTCAGCTTGCCACTGCATGCCGCANGATTCAGCGTGAAGCGGGCTC
TGTGGTACGGACAGCTGTCCGGAATGGTGGAGCCCATTTTTGGAGTTCTG
GGCGCC
BS08068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13189-PA | 1026 | CG13189-RA | 1..840 | 17..856 | 4181 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip48C-RA | 1878 | CG13189-RA | 446..1285 | 17..856 | 4189 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11899962..11900801 | 17..856 | 4189 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:45:11 has no hits.
BS08068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:37 Download gff for
BS08068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:25 Download gff for
BS08068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:23 Download gff for
BS08068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-RA | 446..1285 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:29 Download gff for
BS08068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip48C-RA | 446..1285 | 17..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:29 Download gff for
BS08068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11899962..11900801 | 17..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:23 Download gff for
BS08068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7787467..7788306 | 17..856 | 99 | | Plus |
BS08068.complete Sequence
1058 bp (1058 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636087
> BS08068.complete
GAAGTTATCAGTCGACATGATTCCAGGCTATGGACCCGTCACGCAGGCTC
TGCTGGGCACCCTGCTTACCTGGGGACTGACCGCCGCTGGCGCCGCCCTA
GTGATCTTCGTCCGGGGTAACCAGCGGAGGTCTCTGGACGCCGCCCTGGG
ATTCGCAGCTGGCGTAATGATAGCAGCCTCCTTTTGGTCACTCCTCAAGC
CGGCCATCGAAATGGCCGAGAGTTCCCATTTGTACGGAGTATACGCCTTT
CTGCCCGTCGCTGGAGGCTTCCTCTTGGGATCGATCTTCGTCTACGGATG
CGACAAATTGATGTCATACCTGGGCCTTAACAGCACCAACATGATGATCC
AGATGACGCAATCAAAAGCCAAGGCGGACATAGCCATCGAGGACTCTAAG
CGCAATGGAGTTGCCCCCGATAGGTTGGCCTCAAAGAGTCTGGACAGCTT
CTCCGACTGCCTTAGCGTGCAGCACAGCGGCGAATCGAGACGCCGAAAGA
AGGGAGCTAGCATCAACGAGATGGAGCAGTGCACCTACACCACGCCTGAG
GAGCAGCAGCGCGCCGAGGACGCCCTGTCCCAGTGGAAGAGGATTATGCT
TTTGGTCGTGGCCATCACGGTCCACAACATTCCAGAAGGGCTGGCTGTGG
GCGTAAGCTTTGGTGCCATTGGCTCCACGAACTCATCGACATTTGAGAGC
GCCCGCAATTTGGCCATTGGCATTGGCATTCAAAACTTCCCCGAGGGATT
GGCTGTCAGCTTGCCACTGCATGCCGCAGGATTCAGCGTGAAGCGGGCTC
TGTGGTACGGACAGCTGTCCGGAATGGTGGAGCCCATTTTTGGAGTTCTG
GGCGCCGTGGCGGTGACCTTTGCCAACCTGATCCTGCCATACGCCTTGTC
TTTTGCGGCCGGAGCCATGATATACATTGTGTCGGACGACATTCTGCCGG
AGGCTCATGCCAGCGGAAATGGAACGATCGCCACGTGGGGCACTGTATCC
GGCTTCCTGATCATGATGTGTCTGGAGGTGGCGCTGTCGTGAAAGCTTTC
TAGACCAT
BS08068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip48C-RA | 1026 | CG13189-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip48C-RA | 1878 | CG13189-RA | 446..1471 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11899962..11900987 | 17..1042 | 5130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:50:32 has no hits.
BS08068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:37 Download gff for
BS08068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:48 Download gff for
BS08068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-RA | 444..1469 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:35 Download gff for
BS08068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-RA | 446..1470 | 17..1041 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:37 Download gff for
BS08068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13189-RA | 444..1469 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:21 Download gff for
BS08068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip48C-RA | 446..1470 | 17..1041 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:21 Download gff for
BS08068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11899962..11900986 | 17..1041 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:35 Download gff for
BS08068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7787467..7788491 | 17..1041 | 100 | | Plus |
BS08068.pep Sequence
Translation from 16 to 1041
> BS08068.pep
MIPGYGPVTQALLGTLLTWGLTAAGAALVIFVRGNQRRSLDAALGFAAGV
MIAASFWSLLKPAIEMAESSHLYGVYAFLPVAGGFLLGSIFVYGCDKLMS
YLGLNSTNMMIQMTQSKAKADIAIEDSKRNGVAPDRLASKSLDSFSDCLS
VQHSGESRRRKKGASINEMEQCTYTTPEEQQRAEDALSQWKRIMLLVVAI
TVHNIPEGLAVGVSFGAIGSTNSSTFESARNLAIGIGIQNFPEGLAVSLP
LHAAGFSVKRALWYGQLSGMVEPIFGVLGAVAVTFANLILPYALSFAAGA
MIYIVSDDILPEAHASGNGTIATWGTVSGFLIMMCLEVALS*
BS08068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip48C-PA | 341 | CG13189-PA | 1..341 | 1..341 | 1719 | 100 | Plus |
