Clone Sequence Records
BS08070.3prime Sequence
913 bp (755 high quality bases) assembled on 2006-01-06
> BS08070.3prime
ATGGTCTAGAAAGCTTTTAAAGCTCGGTGTGCTTGAAGATGGTTTTTTCA
ATGTTCTCCTGGAGCTTCTCCACTTTGCGAGTTTGCTTCTTCAGCTGATC
CTCCATTTCCTCAAAGCGGCTGCTTTTGTCCTTCACTTTTTCGCCCTTGT
ATTTCTCCTTTTGCAAAGCATGCTCGGCATGCAAGTGACGCAGCTTTAAT
AGGCGACTTTCGAAGTGATGCAATTCGGTTTTAATGGACTCCAGTTCTTT
AACCGTAAAATTGCTAGCCTGGGCCACTCGCCATAGACCCTGGACCTTGG
GTTCAATGAAGTCCTGACTGTGTGGACCGGAGGACACCAGGCGTTCCAGC
CTATCGTAGTGATCCTTGATGCCCGTGTGATGTCCTCGCAGAGTGTTAAG
GTCGTTCTCGAAACTCTTCACGTTTTGCGCATGGGTTTTGATGTCGTTCT
CATTGACATCATTCGAAATCAGATTGTAGGTGTCCAAGTCTTCCGTGTTA
ATAGCATTTTCATGCTTGTCGGTGTCTACGGTGCCAATGTTTTCCAGCAA
GCTGTAGTACACATCCACTTTATCCTGGTGATGGTCAAACTCCTGTTTCA
AGGATTTCAATTCCTCTGCAGTAAATCCGGAAATCTCGGCCTTCTCCCAA
AGTCGGTTGAGTTTCTTGTCCTTGAAAAGACTCTTGTTTCTGTGTCGCTC
CTCGGCGTCGTGGAATTTCTTGTAGGGCTTAAGCTTCTCCGTATCCTGAG
TGTCGTCAAAATGCTCTAGCAGATCGTAGCTGCTCATGATGCCAATGAGC
TTGCGGCGCAGTTCGTCGGCCTTCAGCCCGTCTTTGTCCTTGTGCTGCGA
GTTGAGCTGCTTCAAGCGATCTCCTCCTTATCGTGGATCTTGAGTTCCAT
GTACAGTGACTTG
BS08070.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-PA | 1140 | CG8507-RA | 294..1140 | 863..17 | 4235 | 100 | Minus |
CG8507-PA | 1140 | CG8507-RA | 243..293 | 913..863 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1384 | CG8507-RA | 330..1227 | 913..17 | 4465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9792396..9792758 | 507..145 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 9792121..9792334 | 721..508 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 9791866..9792061 | 913..719 | 930 | 99.5 | Minus |
3R | 32079331 | 3R | 9792811..9792941 | 147..17 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:42:37 has no hits.
BS08070.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:40 Download gff for
BS08070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 243..1140 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:30 Download gff for
BS08070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 243..1140 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:16:52 Download gff for
BS08070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 330..1233 | 10..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:13 Download gff for
BS08070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 330..1233 | 10..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:13 Download gff for
BS08070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9791866..9792061 | 719..913 | 99 | -> | Minus |
3R | 9792124..9792334 | 508..718 | 100 | -> | Minus |
3R | 9792396..9792757 | 146..507 | 100 | -> | Minus |
3R | 9792813..9792947 | 10..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:16:52 Download gff for
BS08070.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5618118..5618479 | 146..507 | 100 | -> | Minus |
arm_3R | 5617588..5617783 | 719..913 | 99 | -> | Minus |
arm_3R | 5617846..5618056 | 508..718 | 100 | -> | Minus |
arm_3R | 5618535..5618669 | 10..145 | 97 | | Minus |
BS08070.5prime Sequence
956 bp (872 high quality bases) assembled on 2006-01-06
> BS08070.5prime
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGGTCA
CACAGTCAGGACTTCATTGAACCCAAGGTCCAGGGTCTATGGCGAGTGGG
CCANGCTAGCAATTTTACGGTTAAAGAACTGGAGTCCATAAAACCGAATT
GCATCA
BS08070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-PA | 1140 | CG8507-RA | 1..923 | 17..939 | 4521 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1384 | CG8507-RA | 88..1028 | 17..956 | 4624 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9792396..9792687 | 666..956 | 1354 | 98.3 | Plus |
3R | 32079331 | 3R | 9791570..9791791 | 17..238 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 9791846..9792061 | 239..454 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 9792121..9792334 | 452..665 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:02:32 has no hits.
BS08070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:41 Download gff for
BS08070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 1..940 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:32 Download gff for
BS08070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-PA | 1..940 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:26:45 Download gff for
BS08070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 82..1027 | 10..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:04 Download gff for
BS08070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 82..1027 | 10..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:04 Download gff for
BS08070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9792124..9792334 | 455..665 | 100 | -> | Plus |
3R | 9792396..9792686 | 666..955 | 98 | | Plus |
3R | 9791564..9791791 | 10..238 | 98 | -> | Plus |
3R | 9791846..9792061 | 239..454 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:26:45 Download gff for
BS08070.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5617286..5617513 | 10..238 | 98 | -> | Plus |
arm_3R | 5617568..5617783 | 239..454 | 100 | -> | Plus |
arm_3R | 5617846..5618056 | 455..665 | 100 | -> | Plus |
arm_3R | 5618118..5618408 | 666..955 | 98 | | Plus |
BS08070.complete Sequence
1172 bp assembled on 2007-10-17
GenBank Submission: FJ636088
> BS08070.complete
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCA
CACAGTCAGGACTTCATTGAACCCAAGGTCCAGGGTCTATGGCGAGTGGC
CCAGGCTAGCAATTTTACGGTTAAAGAACTGGAGTCCATTAAAACCGAAT
TGCATCACTTCGAAAGTCGCCTATTAAAGCTGCGTCACTTGCATGCCGAG
CATGCTTTGCAAAAGGAGAAATACAAGGGCGAAAAAGTGAAGGACAAAAG
CAGCCGCTTTGAGGAAATGGAGGATCAGCTGAAGAAGCAAACTCGCAAAG
TGGAGAAGCTCCAGGAGAACATTGAAAAAACCATCTTCAAGCACACCGAG
CTTTAAAAGCTTTCTAGACCAT
BS08070.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1140 | CG8507-PA | 1..1140 | 17..1156 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-RA | 1384 | CG8507-RA | 88..1227 | 17..1156 | 5700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9792396..9792758 | 666..1028 | 1815 | 100 | Plus |
3R | 32079331 | 3R | 9791570..9791791 | 17..238 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 9791846..9792061 | 239..454 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 9792121..9792334 | 452..665 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 9792811..9792941 | 1026..1156 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:46:02 has no hits.
BS08070.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:00 Download gff for
BS08070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 1..1140 | 17..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:49 Download gff for
BS08070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 95..1246 | 10..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:34:04 Download gff for
BS08070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 88..1225 | 17..1154 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:44 Download gff for
BS08070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 101..1238 | 17..1154 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:07 Download gff for
BS08070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8507-RA | 88..1225 | 17..1154 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:07 Download gff for
BS08070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9792124..9792334 | 455..665 | 100 | -> | Plus |
3R | 9791846..9792061 | 239..454 | 100 | -> | Plus |
3R | 9791570..9791791 | 17..238 | 100 | -> | Plus |
3R | 9792396..9792757 | 666..1027 | 100 | -> | Plus |
3R | 9792813..9792939 | 1028..1154 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:34:04 Download gff for
BS08070.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5617292..5617513 | 17..238 | 100 | -> | Plus |
arm_3R | 5617568..5617783 | 239..454 | 100 | -> | Plus |
arm_3R | 5617846..5618056 | 455..665 | 100 | -> | Plus |
arm_3R | 5618118..5618479 | 666..1027 | 100 | -> | Plus |
arm_3R | 5618535..5618661 | 1028..1154 | 100 | | Plus |
BS08070.pep Sequence
Translation from 16 to 1155
> BS08070.pep
MVRSALVVAAIALSVLIALQGVDADKKQSKKYSKEANDPHFQQVKQEKYD
PDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKIHDKEEIAWKQ
LNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHD
AEERHRNKSLFKDKKLNRLWEKAEISGFTAEELKSLKQEFDHHQDKVDVY
YSLLENIGTVDTDKHENAINTEDLDTYNLISNDVNENDIKTHAQNVKSFE
NDLNTLRGHHTGIKDHYDRLERLVSSGPHSQDFIEPKVQGLWRVAQASNF
TVKELESIKTELHHFESRLLKLRHLHAEHALQKEKYKGEKVKDKSSRFEE
MEDQLKKQTRKVEKLQENIEKTIFKHTEL*
BS08070.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8507-PA | 379 | CG8507-PA | 1..379 | 1..379 | 1965 | 100 | Plus |