Clone BS08070 Report

Search the DGRC for BS08070

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG8507-RA
Protein status:BS08070.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08070.3prime Sequence

913 bp (755 high quality bases) assembled on 2006-01-06

> BS08070.3prime
ATGGTCTAGAAAGCTTTTAAAGCTCGGTGTGCTTGAAGATGGTTTTTTCA
ATGTTCTCCTGGAGCTTCTCCACTTTGCGAGTTTGCTTCTTCAGCTGATC
CTCCATTTCCTCAAAGCGGCTGCTTTTGTCCTTCACTTTTTCGCCCTTGT
ATTTCTCCTTTTGCAAAGCATGCTCGGCATGCAAGTGACGCAGCTTTAAT
AGGCGACTTTCGAAGTGATGCAATTCGGTTTTAATGGACTCCAGTTCTTT
AACCGTAAAATTGCTAGCCTGGGCCACTCGCCATAGACCCTGGACCTTGG
GTTCAATGAAGTCCTGACTGTGTGGACCGGAGGACACCAGGCGTTCCAGC
CTATCGTAGTGATCCTTGATGCCCGTGTGATGTCCTCGCAGAGTGTTAAG
GTCGTTCTCGAAACTCTTCACGTTTTGCGCATGGGTTTTGATGTCGTTCT
CATTGACATCATTCGAAATCAGATTGTAGGTGTCCAAGTCTTCCGTGTTA
ATAGCATTTTCATGCTTGTCGGTGTCTACGGTGCCAATGTTTTCCAGCAA
GCTGTAGTACACATCCACTTTATCCTGGTGATGGTCAAACTCCTGTTTCA
AGGATTTCAATTCCTCTGCAGTAAATCCGGAAATCTCGGCCTTCTCCCAA
AGTCGGTTGAGTTTCTTGTCCTTGAAAAGACTCTTGTTTCTGTGTCGCTC
CTCGGCGTCGTGGAATTTCTTGTAGGGCTTAAGCTTCTCCGTATCCTGAG
TGTCGTCAAAATGCTCTAGCAGATCGTAGCTGCTCATGATGCCAATGAGC
TTGCGGCGCAGTTCGTCGGCCTTCAGCCCGTCTTTGTCCTTGTGCTGCGA
GTTGAGCTGCTTCAAGCGATCTCCTCCTTATCGTGGATCTTGAGTTCCAT
GTACAGTGACTTG

BS08070.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 1140 CG8507-RA 294..1140 863..17 4235 100 Minus
CG8507-PA 1140 CG8507-RA 243..293 913..863 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1384 CG8507-RA 330..1227 913..17 4465 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9792396..9792758 507..145 1815 100 Minus
3R 32079331 3R 9792121..9792334 721..508 1070 100 Minus
3R 32079331 3R 9791866..9792061 913..719 930 99.5 Minus
3R 32079331 3R 9792811..9792941 147..17 655 100 Minus
Blast to na_te.dros performed on 2015-01-31 15:42:37 has no hits.

BS08070.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:40 Download gff for BS08070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 243..1140 17..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:30 Download gff for BS08070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 243..1140 17..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:16:52 Download gff for BS08070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 330..1233 10..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:13 Download gff for BS08070.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 330..1233 10..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:13 Download gff for BS08070.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9791866..9792061 719..913 99 -> Minus
3R 9792124..9792334 508..718 100 -> Minus
3R 9792396..9792757 146..507 100 -> Minus
3R 9792813..9792947 10..145 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:16:52 Download gff for BS08070.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5618118..5618479 146..507 100 -> Minus
arm_3R 5617588..5617783 719..913 99 -> Minus
arm_3R 5617846..5618056 508..718 100 -> Minus
arm_3R 5618535..5618669 10..145 97   Minus

BS08070.5prime Sequence

956 bp (872 high quality bases) assembled on 2006-01-06

> BS08070.5prime
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGGTCA
CACAGTCAGGACTTCATTGAACCCAAGGTCCAGGGTCTATGGCGAGTGGG
CCANGCTAGCAATTTTACGGTTAAAGAACTGGAGTCCATAAAACCGAATT
GCATCA

BS08070.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 1140 CG8507-RA 1..923 17..939 4521 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1384 CG8507-RA 88..1028 17..956 4624 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9792396..9792687 666..956 1354 98.3 Plus
3R 32079331 3R 9791570..9791791 17..238 1110 100 Plus
3R 32079331 3R 9791846..9792061 239..454 1080 100 Plus
3R 32079331 3R 9792121..9792334 452..665 1070 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:02:32 has no hits.

BS08070.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:41 Download gff for BS08070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 1..940 17..955 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:32 Download gff for BS08070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-PA 1..940 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:26:45 Download gff for BS08070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 82..1027 10..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:04 Download gff for BS08070.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 82..1027 10..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:04 Download gff for BS08070.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9792124..9792334 455..665 100 -> Plus
3R 9792396..9792686 666..955 98   Plus
3R 9791564..9791791 10..238 98 -> Plus
3R 9791846..9792061 239..454 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:26:45 Download gff for BS08070.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5617286..5617513 10..238 98 -> Plus
arm_3R 5617568..5617783 239..454 100 -> Plus
arm_3R 5617846..5618056 455..665 100 -> Plus
arm_3R 5618118..5618408 666..955 98   Plus

BS08070.complete Sequence

1172 bp assembled on 2007-10-17

GenBank Submission: FJ636088

> BS08070.complete
GAAGTTATCAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCG
CACTTTCCGTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAG
AGCAAGAAGTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAA
GCAGGAGAAGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCA
TGGCCAAGTTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAG
CCCAAGCTCAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGA
GATCGCTTGGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGA
AGGCCGACGAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGAT
CTGCTAGAGCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTA
CAAGAAATTCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCA
AGGACAAGAAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTT
ACTGCAGAGGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGA
TAAAGTGGATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACA
CCGACAAGCATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAAT
CTGATTTCGAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAA
CGTGAAGAGTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGG
GCATCAAGGATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCA
CACAGTCAGGACTTCATTGAACCCAAGGTCCAGGGTCTATGGCGAGTGGC
CCAGGCTAGCAATTTTACGGTTAAAGAACTGGAGTCCATTAAAACCGAAT
TGCATCACTTCGAAAGTCGCCTATTAAAGCTGCGTCACTTGCATGCCGAG
CATGCTTTGCAAAAGGAGAAATACAAGGGCGAAAAAGTGAAGGACAAAAG
CAGCCGCTTTGAGGAAATGGAGGATCAGCTGAAGAAGCAAACTCGCAAAG
TGGAGAAGCTCCAGGAGAACATTGAAAAAACCATCTTCAAGCACACCGAG
CTTTAAAAGCTTTCTAGACCAT

BS08070.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1140 CG8507-PA 1..1140 17..1156 5700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-RA 1384 CG8507-RA 88..1227 17..1156 5700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9792396..9792758 666..1028 1815 100 Plus
3R 32079331 3R 9791570..9791791 17..238 1110 100 Plus
3R 32079331 3R 9791846..9792061 239..454 1080 100 Plus
3R 32079331 3R 9792121..9792334 452..665 1070 100 Plus
3R 32079331 3R 9792811..9792941 1026..1156 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:46:02 has no hits.

BS08070.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:00 Download gff for BS08070.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 1..1140 17..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:49 Download gff for BS08070.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 95..1246 10..1163 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:34:04 Download gff for BS08070.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 88..1225 17..1154 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:44 Download gff for BS08070.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 101..1238 17..1154 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:07 Download gff for BS08070.complete
Subject Subject Range Query Range Percent Splice Strand
CG8507-RA 88..1225 17..1154 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:07 Download gff for BS08070.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9792124..9792334 455..665 100 -> Plus
3R 9791846..9792061 239..454 100 -> Plus
3R 9791570..9791791 17..238 100 -> Plus
3R 9792396..9792757 666..1027 100 -> Plus
3R 9792813..9792939 1028..1154 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:34:04 Download gff for BS08070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5617292..5617513 17..238 100 -> Plus
arm_3R 5617568..5617783 239..454 100 -> Plus
arm_3R 5617846..5618056 455..665 100 -> Plus
arm_3R 5618118..5618479 666..1027 100 -> Plus
arm_3R 5618535..5618661 1028..1154 100   Plus

BS08070.pep Sequence

Translation from 16 to 1155

> BS08070.pep
MVRSALVVAAIALSVLIALQGVDADKKQSKKYSKEANDPHFQQVKQEKYD
PDFKSIQRPFRMAKLNLVWAKAQNRLTEPKLKSLYMELKIHDKEEIAWKQ
LNSQHKDKDGLKADELRRKLIGIMSSYDLLEHFDDTQDTEKLKPYKKFHD
AEERHRNKSLFKDKKLNRLWEKAEISGFTAEELKSLKQEFDHHQDKVDVY
YSLLENIGTVDTDKHENAINTEDLDTYNLISNDVNENDIKTHAQNVKSFE
NDLNTLRGHHTGIKDHYDRLERLVSSGPHSQDFIEPKVQGLWRVAQASNF
TVKELESIKTELHHFESRLLKLRHLHAEHALQKEKYKGEKVKDKSSRFEE
MEDQLKKQTRKVEKLQENIEKTIFKHTEL*

BS08070.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8507-PA 379 CG8507-PA 1..379 1..379 1965 100 Plus