Clone Sequence Records
BS08071.3prime Sequence
926 bp (905 high quality bases) assembled on 2006-01-06
> BS08071.3prime
ATGGTCTAGAAAGCTTTTAAAAGCCCCTCAAGACGTCCACTTCCTCGGGC
ATAGCGAAAATGCGAATCTCTTTTTCGGTCATCAGGTCCTGTAGCGATGC
TAGTTTCACTGGCAAAACCTTGGCGCCTTCCATCAGTAGTGACTTGTCCC
AGGGACACTCGTCCATGGCCATTATAAGGACTTCTTTGCTGCGCCTAAAC
GAGGCATTCGTTTTGGATAGGGCAATCATGTACAAGCGCCAATAGATGGA
GTTCCTGCGCAGTATGCGATAATGCTCTTCCTCCACATCCAAACGATCTA
AATTGGTCGGGAGAAAAGTCTCGACAATGCTGACCAAACGATTGCACACC
ATCTTCCTTGTGGCTTCCTTTGAAAACTTATCGTTGGTATCTACGATTCC
AAAGCGATTGTGAATCGCAACGACCAAGTGCGCCAGTGAAGCGATGCCGG
CTTTGGTGCGTATGAGCCGGCTACGCTGCTTGTGCCACATAATCGATTTT
AAGCTGGCCCACAGCTGTAGAAACACCATATTTCGTGGAAACTCTTCGAG
TCCATTCTCGAGCAGTTCATGTAGCTTGATCTTTTTGAATCCAGTATAGA
ATTCAACTTCGCCAAATACTAAAAAGGACAAACGCAGATGTAGCATCTGT
ATTTCCATGATCTGCTCCCTAAGGAAACGCTTTCTTTCGCTGTCCTTGAC
GGCCTCGGGACCAAATTCGTTATTCTGCAGGTCATTGAGCCACATTCTAG
CCTCCTTATGACGACGATTATTCAGCACTTCGATCAAACAGATAGCGCGC
AAGAGGATGAGCAATTTGTTGGGCTGGAAGTACTCCTCCAAAGACATCTC
AGCTGGCTGGGTATCGAGGGATTTCAGTTCCGCTCGCACCATTTTCTCTG
CATTTCTCAGGNCTTTCAAAACCTGG
BS08071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-PA | 2955 | CG5877-RA | 2047..2955 | 925..17 | 4526 | 99.8 | Minus |
| CG5877-PB | 2196 | CG5877-RB | 1288..2196 | 925..17 | 4526 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-RD | 3171 | CG5877-RD | 2172..3080 | 925..17 | 4534 | 99.9 | Minus |
| CG5877-RB | 2975 | CG5877-RB | 1451..2359 | 925..17 | 4534 | 99.9 | Minus |
| CG5877-RA | 3696 | CG5877-RA | 2172..3080 | 925..17 | 4534 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15295645..15296553 | 925..17 | 4534 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:34:48 has no hits.
BS08071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:42 Download gff for
BS08071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-PA | 2046..2955 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:33 Download gff for
BS08071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-PB | 1287..2196 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:27 Download gff for
BS08071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 2171..3088 | 10..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:31 Download gff for
BS08071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 2171..3088 | 10..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:31 Download gff for
BS08071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15295644..15296561 | 10..926 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:27 Download gff for
BS08071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15189677..15190594 | 10..926 | 99 | | Minus |
BS08071.5prime Sequence
883 bp (856 high quality bases) assembled on 2006-01-06
> BS08071.5prime
GAAGTTATCAGTCGACATGCTGAAGAGAAACCCATTCCAGTACACACTGT
GGAGCAACCTAATAATGATCACCCAAGGCGACATGGCTTGTTGCAACGTG
TCCGCTGTGCTCCGGATTTACGAGTACAGCATGCGCCGCATGCATGTGGG
ACACAACGATGAAATAACCCGAAGATTCATCATTAAGGAGACTGATGTGA
TAATGCTAAAACTTTTTCACAATTGCTTACTATTCCTACGCCAATCGGGC
CATACTAACTGGATGTTTGCTCTGATTCGTTTGTCTATGGAGTTGAATTT
CCCCTACCTGACGTTCGAATGCCTACAAGCACATGCAGGAAGAGAAAAAG
CATTGATTGGATTCGAGGAAGTGGTGCTGCGTTCGGGAATGCCGATGCCC
GAGATCTGGACGCGTGTGGAGCAGCTCAGACAGGCATACTGCTTCCTGCC
GTTGAAAGACAAGCTGGCTTCGTCGACTAATGTCTTCAAAAACAAGATGA
ACGCCGAACGATACTTTTGCAGCGACAAACTTGTCCCATATGTACACGCA
CTCAAGTCGCAGAATAATCGTCTGCACCTGGTGCTCGTGGTTGTTCAACT
AATGAAATTGCCCCTGATTCGCAGCGCTAGTTTGGCGGACAAATTGAATC
CTTGCATCGAGGACTTCGGCGAGTCTGAGGCCATTGAAATGCTTTTCGCT
GCCATAGTAGATAGGCACTCCTATGCAGTGGCTTCGTTGCAATATCAATT
TGATGCAGCCATGATCGACTTAGCCAGAGAGATGTCCGTGACGCCCAGCT
ACATGCCGCATCTTGTTGGCCATAAACTGTATGCGGATACCGTGAGTAAT
ATGCTACTCAAATGCGTCGAAAGTCTTATCGGC
BS08071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-PA | 2955 | CG5877-RA | 760..1614 | 17..871 | 4275 | 100 | Plus |
| CG5877-PB | 2196 | CG5877-RB | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-RD | 3171 | CG5877-RD | 885..1751 | 17..883 | 4290 | 99.8 | Plus |
| CG5877-RB | 2975 | CG5877-RB | 164..1030 | 17..883 | 4290 | 99.8 | Plus |
| CG5877-RA | 3696 | CG5877-RA | 885..1751 | 17..883 | 4290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15294358..15295212 | 17..871 | 4275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:05:33 has no hits.
BS08071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:43 Download gff for
BS08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-PA | 755..1626 | 10..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:34 Download gff for
BS08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-PB | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:13:28 Download gff for
BS08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 880..1751 | 10..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:05 Download gff for
BS08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 880..1751 | 10..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:05 Download gff for
BS08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15294353..15295224 | 10..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:13:28 Download gff for
BS08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15188386..15189257 | 10..883 | 99 | | Plus |
BS08071.complete Sequence
2228 bp assembled on 2008-01-03
GenBank Submission: FJ636089
> BS08071.complete
GAAGTTATCAGTCGACATGCTGAAGAGAAACCCATTCCAGTACACACTGT
GGAGCAACCTAATAATGATCACCCAAGGCGACATGGCTTGTTGCAACGTG
TCCGCTGTGCTCCGGATTTACGAGTACAGCATGCGCCGCATGCATGTGGG
ACACAACGATGAAATAACCCGAAGATTCATCATTAAGGAGACTGATGTGA
TAATGCTAAAACTTTTTCACAATTGCTTACTATTCCTACGCCAATCGGGC
CATACTAACTGGATGTTTGCTCTGATTCGTTTGTCTATGGAGTTGAATTT
CCCCTACCTGACGTTCGAATGCCTACAAGCACATGCAGGAAGAGAAAAAG
CATTGATTGGATTCGAGGAAGTGGTGCTGCGTTCGGGAATGCCGATGCCC
GAGATCTGGACGCGTGTGGAGCAGCTCAGACAGGCATACTGCTTCCTGCC
GTTGAAAGACAAGCTGGCTTCGTCGACTAATGTCTTCAAAAACAAGATGA
ACGCCGAACGATACTTTTGCAGCGACAAACTTGTCCCATATGTACACGCA
CTCAAGTCGCAGAATAATCGTCTGCACCTGGTGCTCGTGGTTGTTCAACT
AATGAAATTGCCCCTGATTCGCAGCGCTAGTTTGGCGGACAAATTGAATC
CTTGCATCGAGGACTTCGGCGAGTCTGAGGCCATTGAAATGCTTTTCGCT
GCCATAGTAGATAGGCACTCCTATGCAGTGGCTTCGTTGCAATATCAATT
TGATGCAGCCATGATCGACTTAGCCAGAGAGATGTCCGTGACGCCCAGCT
ACATGCCGCATCTTGTTGGCCATAAACTGTATGCGGATACCGTGAGTAAT
ATGCTACTCAAATGCGTCGAAGTCTTTATCGGCGAGGAGTCCAAGCGACG
ATTGTTGCTTATTCTGTATTTGCGATTCCAAAAACTATTAATAGTGCTGC
ACAAGTCCATGGGCAAGCTAACGAAAAAATTCTTTAAGGATAAACGAACA
CGGATGCGCAAACTGATCAATTTGACGGAGAACCGAAATGTTATTAGTTT
CTACACGGAACAGGCCTTGTGCGAAATTGAGGCTAAGCATTACCGACTGG
GCTTTTCCATAATTTCGAGGATCATCACAAAAAAATCGGAAGAATCCAGC
TGCATTAGTTGCGTGGACACAATGCATCTCTATTTAGTTTGTGCAGAATT
GCATATACATAGGGGCCGCATATCTAAGGCCATCGGCATACTCGTTTCAC
TGTGTTTGGAAAAACATGCCGGAGTAAAGCAGACAACTGTCTACTCCAAG
GAACAGGTTTTGAAAGGCCTGAGAAATGCAGAGAAAATGGTGCGAGCGGA
ACTGAAATCCCTCGATACCCAGCCAGCTGAGATGTCTTTGGAGGAGTACT
TCCAGCCCAACAAATTGCTCATCCTCTTGCGCGCTATCTGTTTGATCGAA
GTGCTGAATAATCGTCGTCATAAGGAGGCTAGAATGTGGCTCAATGACCT
GCAGAATAACGAATTTGGTCCCGAGGCCGTCAAGGACAGCGAAAGAAAGC
GTTTCCTTAGGGAGCAGATCATGGAAATACAGATGCTACATCTGCGTTTG
TCCTTTTTAGTATTTGGCGAAGTTGAATTCTATACTGGATTCAAAAAGAT
CAAGCTACATGAACTGCTCGAGAATGGACTCGAAGAGTTTCCACGAAATA
TGGTGTTTCTACAGCTGTGGGCCAGCTTAAAATCGATTATGTGGCACAAG
CAGCGTAGCCGGCTCATACGCACCAAAGCCGGCATCGCTTCACTGGCGCA
CTTGGTCGTTGCGATTCACAATCGCTTTGGAATCGTAGATACCAACGATA
AGTTTTCAAAGGAAGCCACAAGGAAGATGGTGTGCAATCGTTTGGTCAGC
ATTGTCGAGACTTTTCTCCCGACCAATTTAGATCGTTTGGATGTGGAGGA
AGAGCATTATCGCATACTGCGCAGGAACTCCATCTATTGGCGCTTGTACA
TGATTGCCCTATCCAAAACGAATGCCTCGTTTAGGCGCAGCAAAGAAGTC
CTTATAATGGCCATGGACGAGTGTCCCTGGGACAAGTCACTACTGATGGA
AGGCGCCAAGGTTTTGCCAGTGAAACTAGCATCGCTACAGGACCTGATGA
CCGAAAAAGAGATTCGCATTTTCGCTATGCCCGAGGAAGTGGACGTCTTG
AGGGGCTTTTAAAAGCTTTCTAGACCAT
BS08071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-RD | 2955 | CG5877-PD | 760..2955 | 17..2212 | 10980 | 100 | Plus |
| CG5877-RB | 2196 | CG5877-PB | 1..2196 | 17..2212 | 10980 | 100 | Plus |
| CG5877-RA | 2955 | CG5877-PA | 760..2955 | 17..2212 | 10980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-RD | 3171 | CG5877-RD | 885..3080 | 17..2212 | 10980 | 100 | Plus |
| CG5877-RB | 2975 | CG5877-RB | 164..2359 | 17..2212 | 10980 | 100 | Plus |
| CG5877-RA | 3696 | CG5877-RA | 885..3080 | 17..2212 | 10980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15294358..15296553 | 17..2212 | 10980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:59:00 has no hits.
BS08071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:04 Download gff for
BS08071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RB | 1..2196 | 17..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:35 Download gff for
BS08071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RB | 164..2357 | 17..2210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:44 Download gff for
BS08071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 885..3078 | 17..2210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:04 Download gff for
BS08071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RB | 159..2367 | 10..2219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:03 Download gff for
BS08071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5877-RA | 885..3078 | 17..2210 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:03 Download gff for
BS08071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15294358..15296551 | 17..2210 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:44 Download gff for
BS08071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15188391..15190584 | 17..2210 | 100 | | Plus |
BS08071.pep Sequence
Translation from 16 to 2211
> BS08071.pep
MLKRNPFQYTLWSNLIMITQGDMACCNVSAVLRIYEYSMRRMHVGHNDEI
TRRFIIKETDVIMLKLFHNCLLFLRQSGHTNWMFALIRLSMELNFPYLTF
ECLQAHAGREKALIGFEEVVLRSGMPMPEIWTRVEQLRQAYCFLPLKDKL
ASSTNVFKNKMNAERYFCSDKLVPYVHALKSQNNRLHLVLVVVQLMKLPL
IRSASLADKLNPCIEDFGESEAIEMLFAAIVDRHSYAVASLQYQFDAAMI
DLAREMSVTPSYMPHLVGHKLYADTVSNMLLKCVEVFIGEESKRRLLLIL
YLRFQKLLIVLHKSMGKLTKKFFKDKRTRMRKLINLTENRNVISFYTEQA
LCEIEAKHYRLGFSIISRIITKKSEESSCISCVDTMHLYLVCAELHIHRG
RISKAIGILVSLCLEKHAGVKQTTVYSKEQVLKGLRNAEKMVRAELKSLD
TQPAEMSLEEYFQPNKLLILLRAICLIEVLNNRRHKEARMWLNDLQNNEF
GPEAVKDSERKRFLREQIMEIQMLHLRLSFLVFGEVEFYTGFKKIKLHEL
LENGLEEFPRNMVFLQLWASLKSIMWHKQRSRLIRTKAGIASLAHLVVAI
HNRFGIVDTNDKFSKEATRKMVCNRLVSIVETFLPTNLDRLDVEEEHYRI
LRRNSIYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVL
PVKLASLQDLMTEKEIRIFAMPEEVDVLRGF*
BS08071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5877-PD | 984 | CG5877-PD | 254..984 | 1..731 | 3744 | 100 | Plus |
| CG5877-PB | 731 | CG5877-PB | 1..731 | 1..731 | 3744 | 100 | Plus |
| CG5877-PA | 984 | CG5877-PA | 254..984 | 1..731 | 3744 | 100 | Plus |
