Clone Sequence Records
BS08072.3prime Sequence
931 bp (797 high quality bases) assembled on 2006-01-06
> BS08072.3prime
ATGGTCTAGAAAGCTTTCATAGCAGAGGCTCATTCTCTATCTTGACATCG
CACTCAACCATGGAGCTGTCGACATAGTCAAACGAAGTTGGTGTTTTTCG
GCTACTGATTTGGTAGCTGGAATTGGATAGATGGTACTGGGATTTCTCCA
GCTGAGTGGCAAAACTGGAATTCGGGGCTGGTGTTAGTTTGGGCATGCTG
CGCTCTAGAACGTCTTCGGGTCCCGCCGCCGCGAGCATGTGCTGATCCTC
CTCCCTGAGTTCCACCAGAACGCGCGCCATCTCCATTCGAAACTTAAGAT
TGCTAATGGCTGACAGAGACTTTACGTGCGGCATCATGCTCATCAAGAAA
CTCAAGTCCGAATCGTTCTTTAGATCGGGTTCAGTGGTAGACTTTGACGC
CTGGCTGGCGTATCCATTCAATAAGGGGACATCGTTAGACGGCGAAGTTT
TCCTCCGACGTCCTCTCTTCGAAGGCGGGGGTGGACGTGGCAGGAATTGT
TGGTGGCGCGGCAAGTGTATGGGCAATGTGGGCGATAGATCCTGATCGGA
ACGATGGGCGCCCGAGGATGAAGAATCCAAAGGCTTGATCAGCGAGCCTT
TATCCGAGCCAGAGTCCTGGGGCACTGACGGCTCCCGCTTAAATATGTCC
TCGATGATTTCAAAGTCAACAGAGTCATCATTGTCCAAATCCAAATCGAT
AGCGAAGTCAACCAGTCGGGTGGGCTCGAAGACTTCCGGCTGCTCGGTGT
TCATCACGAAGGGCTCTGGTGGAAAGGGCACCAGGCCCTCCGGATCGAAG
ATTTGGCGCATGAACTCCAGTGAGCGAAAGTATGGCCAGTGGGACATCTC
GATTCGTTTCTGCTGTATCTTGCGCACCTCTGCCCGGTAGCTGTCCCGCA
TTCCCTTGAAACGTTTCTTGCAGATCGAGAC
BS08072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-PA | 1053 | CG11723-RA | 139..1053 | 931..17 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 390..1305 | 931..16 | 4580 | 100 | Minus |
| CG11723-RA | 1707 | CG11723-RA | 390..1305 | 931..16 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2145899..2146814 | 16..931 | 4580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:52:11 has no hits.
BS08072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:44 Download gff for
BS08072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 139..1053 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:35 Download gff for
BS08072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 139..1053 | 17..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:04 Download gff for
BS08072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 390..1317 | 2..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:18:07 Download gff for
BS08072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 390..1317 | 2..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:18:07 Download gff for
BS08072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2145887..2146814 | 2..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:04 Download gff for
BS08072.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2145887..2146814 | 2..931 | 99 | | Plus |
BS08072.5prime Sequence
829 bp (800 high quality bases) assembled on 2006-01-06
> BS08072.5prime
GAAGTTATCAGTCGACATGAAATCAGATAACTACCGTCTCATACAGGAGG
TGTCCAAGCGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGC
AACCAGGACGCAGCTCTCCAGTGGGCGAGTGTCGCGCAGATAATGCAGCA
GGATGTCTCGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACC
GGGCAGAGGTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGG
CCATACTTTCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGG
CCTGGTGCCCTTTCCACCAGAGCCCTTCGTGATGAACACCGAGCAGCCGG
AAGTCTTCGAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTG
GACAATGATGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCG
GGAGCCGTCAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCA
AGCCTTTGGATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTA
TCGCCCACATTGCCCATACACTTGCCGCGCCACCAACAATTCCTGCCACG
TCCACCCCCGCCTTCGAAGAGAGGACGTCGGAGGAAAACTTCGCCGTCTA
ACGATGTCCCCTTATTGAATGGATACGCCAGCCAGGCGTCAAAGTCTACC
ACTGAACCCGATCTAAAGAACGATTCGGACTTGAGTTTCTTGATGAGCAT
GATGCCGCACGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAGTTTCGAA
TGGAGATGGCGCGCGTTCTGGTGGAACTC
BS08072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-PA | 1053 | CG11723-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 251..1064 | 16..829 | 4070 | 100 | Plus |
| CG11723-RA | 1707 | CG11723-RA | 251..1064 | 16..829 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2146140..2146814 | 829..155 | 3375 | 100 | Minus |
| 2L | 23513712 | 2L | 2146886..2147025 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:00:11 has no hits.
BS08072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:45 Download gff for
BS08072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:37 Download gff for
BS08072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:24 Download gff for
BS08072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 248..1064 | 13..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:00:51 Download gff for
BS08072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 248..1064 | 13..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:00:51 Download gff for
BS08072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2146140..2146813 | 156..829 | 100 | <- | Minus |
| 2L | 2146886..2147028 | 13..155 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:24 Download gff for
BS08072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2146140..2146813 | 156..829 | 100 | <- | Minus |
| arm_2L | 2146886..2147028 | 13..155 | 99 | | Minus |
BS08072.complete Sequence
1085 bp (1085 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636090
> BS08072.complete
GAAGTTATCAGTCGACATGAAATCAGATAACTACCGTCTCATACAGGAGG
TGTCCAAGCGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGC
AACCAGGACGCAGCTCTCCAGTGGGCGAGTGTCGCGCAGATAATGCAGCA
GGATGTCTCGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACC
GGGCAGAGGTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGG
CCATACTTTCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGG
CCTGGTGCCCTTTCCACCAGAGCCCTTCGTGATGAACACCGAGCAGCCGG
AAGTCTTCGAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTG
GACAATGATGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCG
GGAGCCGTCAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCA
AGCCTTTGGATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTA
TCGCCCACATTGCCCATACACTTGCCGCGCCACCAACAATTCCTGCCACG
TCCACCCCCGCCTTCGAAGAGAGGACGTCGGAGGAAAACTTCGCCGTCTA
ACGATGTCCCCTTATTGAATGGATACGCCAGCCAGGCGTCAAAGTCTACC
ACTGAACCCGATCTAAAGAACGATTCGGACTTGAGTTTCTTGATGAGCAT
GATGCCGCACGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAGTTTCGAA
TGGAGATGGCGCGCGTTCTGGTGGAACTCAGGGAGGAGGATCAGCACATG
CTCGCGGCGGCGGGACCCGAAGACGTTCTAGAGCGCAGCATGCCCAAACT
AACACCAGCCCCGAATTCCAGTTTTGCCACTCAGCTGGAGAAATCCCAGT
ACCATCTATCCAATTCCAGCTACCAAATCAGTAGCCGAAAAACACCAACT
TCGTTTGACTATGTCGACAGCTCCATGGTTGAGTGCGATGTCAAGATAGA
GAATGAGCCTCTGCTATGAAAGCTTTCTAGACCAT
BS08072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1053 | CG11723-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| CG11723-RA | 1053 | CG11723-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 251..1305 | 16..1070 | 5275 | 100 | Plus |
| CG11723-RA | 1707 | CG11723-RA | 251..1305 | 16..1070 | 5275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2145899..2146814 | 1070..155 | 4580 | 100 | Minus |
| 2L | 23513712 | 2L | 2146886..2147025 | 155..16 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:24:34 has no hits.
BS08072.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:38 Download gff for
BS08072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 1..1053 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:50 Download gff for
BS08072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 260..1329 | 13..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:38 Download gff for
BS08072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 252..1303 | 17..1068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:39 Download gff for
BS08072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 260..1329 | 13..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:59 Download gff for
BS08072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 252..1303 | 17..1068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:59 Download gff for
BS08072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2145901..2146813 | 156..1068 | 100 | <- | Minus |
| 2L | 2146886..2147024 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:38 Download gff for
BS08072.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2145901..2146813 | 156..1068 | 100 | <- | Minus |
| arm_2L | 2146886..2147024 | 17..155 | 100 | | Minus |
BS08072.pep Sequence
Translation from 16 to 1068
> BS08072.pep
MKSDNYRLIQEVSKRRCLWDTNMSISYRNQDAALQWASVAQIMQQDVSIC
KKRFKGMRDSYRAEVRKIQQKRIEMSHWPYFRSLEFMRQIFDPEGLVPFP
PEPFVMNTEQPEVFEPTRLVDFAIDLDLDNDDSVDFEIIEDIFKREPSVP
QDSGSDKGSLIKPLDSSSSGAHRSDQDLSPTLPIHLPRHQQFLPRPPPPS
KRGRRRKTSPSNDVPLLNGYASQASKSTTEPDLKNDSDLSFLMSMMPHVK
SLSAISNLKFRMEMARVLVELREEDQHMLAAAGPEDVLERSMPKLTPAPN
SSFATQLEKSQYHLSNSSYQISSRKTPTSFDYVDSSMVECDVKIENEPLL
*
BS08072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-PB | 350 | CG11723-PB | 1..350 | 1..350 | 1814 | 100 | Plus |
| CG11723-PA | 350 | CG11723-PA | 1..350 | 1..350 | 1814 | 100 | Plus |
