Clone BS08075 Report

Search the DGRC for BS08075

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG2316-RA
Protein status:BS08075.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08075.3prime Sequence

859 bp (836 high quality bases) assembled on 2006-01-06

> BS08075.3prime
ATGGTCTAGAAAGCTTCTACGATAGAAATTGTCCTTTTTGTTCTTCATCT
GAATTCATTTTTCTAAACTGCCAGTTTCCAAGACCGTCAAACTCCAAAAT
ATGTGTGTGATATTTCCACAAAGTAGGCCTGTGTGTTATGGTTAACAAAG
TAATTCCCATTCCTTTAGCAATTTCATAAATCGAGCTTTCAACATCTATA
GATACTGCACTGGTGCATTCATCAAGAAGGGCATAGCGCGGTCTATGATA
AAACAAACGGGCTATCGCCATACGTTGTTTTTCACCTCCGGATAATATAT
CCTTCCAATCACGAACAACGTCAAAGCTATCCCGTTGAGCGATGTGCTCA
AGGCTGACCATTTTCAAAATGGATCTTAGCTCGTTTTCAGTTATATGCTT
GCGTTTCATATCTTCCCTCGTGTCAGGGTATATAATTTGATCACACAGGC
TGCCGATTGACATATATGGACGTTGGGGAATGTAAAACATACATGGAACG
TCTTTCACAGGCCTTGGTATGTGCAACTCCCCTGCGTATATAGGCCAAAG
TCCACTTAGTATTCTAAACAAGCTCGATTTTCCACATCCATTTGGCCCAG
TTATTAACAAGTGCACACCAGGCTCTATGCACAATGTAAGTTTTGGTACA
ACTATATCACAGTTAGGTGTGACCACTGGCACTGCACGAAGGCTAATTGA
CATATTTTTCGGATCATCTGAATAGATTATGCGACCCTTTGCTATTGGTT
TTCCATTACGAAACTCAATAATACCGTTCGACTGATTGGATTCCATTACA
CTTGTCTTGCAATAAACTCCCAAAGCAGTTTCCTCAAAGACATCCATCAT
ACCAGCCAC

BS08075.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-PB 2193 CG2316-RB 1351..2193 859..17 4215 100 Minus
CG2316-PG 2193 CG2316-RG 1351..2193 859..17 4215 100 Minus
CG2316-PA 2193 CG2316-RA 1351..2193 859..17 4215 100 Minus
CG2316-PE 2193 CG2316-RE 1351..2193 859..17 4215 100 Minus
CG2316-PF 1632 CG2316-RF 790..1632 859..17 4215 100 Minus
CG2316-PD 2193 CG2316-RD 1351..2193 859..17 4215 100 Minus
CG2316-PC 2193 CG2316-RC 1351..2193 859..17 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2614 CG2316-RH 1482..2324 859..17 4215 100 Minus
CG2316-RC 2773 CG2316-RC 1641..2483 859..17 4215 100 Minus
CG2316-RD 2709 CG2316-RD 1577..2419 859..17 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 185977..186504 332..859 2640 100 Plus
4 1348131 4 184669..184798 116..245 650 100 Plus
4 1348131 4 184515..184615 17..117 505 100 Plus
4 1348131 4 185827..185917 243..333 455 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:28:52 has no hits.

BS08075.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:51 Download gff for BS08075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PF 790..1632 17..859 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:43 Download gff for BS08075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PC 1351..2193 17..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:32:48 Download gff for BS08075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 1577..2419 17..859 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:47 Download gff for BS08075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 1577..2419 17..859 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:47 Download gff for BS08075.3prime
Subject Subject Range Query Range Percent Splice Strand
4 184515..184614 17..116 100 <- Plus
4 184670..184795 117..242 100 <- Plus
4 185827..185916 243..332 100 <- Plus
4 185978..186504 333..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:32:48 Download gff for BS08075.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 205141..205240 17..116 100 <- Plus
arm_4 205296..205421 117..242 100 <- Plus
arm_4 206453..206542 243..332 100 <- Plus
arm_4 206604..207130 333..859 100   Plus

BS08075.5prime Sequence

830 bp (803 high quality bases) assembled on 2006-01-06

> BS08075.5prime
GAAGTTATCAGTCGACATGAGTGTTTTATCAAAATATGTTGACCGGATTG
CAGAAAAGTGTGAACATAATGGGTTTACAAAACACGCTTTTAGCTATGCT
CTAGTAACTAGTGCTATCCTAGCACTTACCATTAAAGTTACTATCCCTTA
CGTAAAAAACGTAAATACTACGTCTAGTGTAAGGACCCAAAAAGGAAAAA
CCAATGGCCAACTTTCACCATCGACAAGAGATAGCTCAGAAGAGGATTTC
AAGCTTGCAGAGGCCGAAAAGTTATTGGTTGCACAGCAGCTTAAAAAAAA
AGCTACAAATAATTTAGTTGAGCCTGGTCTAAATAAGGAGTTTTTAAAAC
ATTTGCAAATGTTGGCCAAAATAATGATTCCTCAGGCCTTCTGCTATGAA
ACAGGATTACTAAGCGTTCATACTTTTTGCTTGATTTCTCGAACATTTCT
TAGTATTTATGTTGCCGCATTGGAGGGAGCTCTTGTTAAATTTATAGTTC
GAAAGGATATTAAGCAATTTGCCCTTGTATTGCTTAAATGGTTTGGAATT
GCTATCCCTGCTACTTTCGTTAATTCTATGATACGGTTTCTCGAAAGTAA
ACTGTCTCTGGCGTTTCGAACTCGGCTTGTGCGTCACTCATATCGGCTCT
ATTTTAAAAACCAAAATTACTACAGAGTATCAAATTTGGACGGACGCATT
GAAAACGCGGATCATAGACTTACGGAAGATATTTCTGTGTTCGCAAATTC
TGTAGCTCATTTGTATAGTAGCCTGACTAAACCATGCTTCGATCTGATGC
TTATTGGCTTGGCACTAATGAGATCGTCTA

BS08075.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-PB 2193 CG2316-RB 1..814 17..830 4070 100 Plus
CG2316-PG 2193 CG2316-RG 1..814 17..830 4070 100 Plus
CG2316-PA 2193 CG2316-RA 1..814 17..830 4070 100 Plus
CG2316-PE 2193 CG2316-RE 1..814 17..830 4070 100 Plus
CG2316-PD 2193 CG2316-RD 1..814 17..830 4070 100 Plus
CG2316-PC 2193 CG2316-RC 1..814 17..830 4070 100 Plus
CG2316-PF 1632 CG2316-RF 1..253 578..830 1265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2614 CG2316-RH 132..945 17..830 4070 100 Plus
CG2316-RC 2773 CG2316-RC 291..1104 17..830 4070 100 Plus
CG2316-RD 2709 CG2316-RD 227..1040 17..830 4070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 188578..189179 618..17 3010 100 Minus
4 1348131 4 188257..188372 830..715 580 100 Minus
4 1348131 4 188425..188528 717..614 505 99 Minus
Blast to na_te.dros performed on 2015-02-11 11:04:49 has no hits.

BS08075.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:52 Download gff for BS08075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PC 1..813 17..829 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:44 Download gff for BS08075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-PB 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:03:16 Download gff for BS08075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 213..1039 5..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:57 Download gff for BS08075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 213..1039 5..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:57 Download gff for BS08075.5prime
Subject Subject Range Query Range Percent Splice Strand
4 188258..188369 718..829 100 <- Minus
4 188425..188523 619..717 100 <- Minus
4 188578..189193 5..618 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:03:16 Download gff for BS08075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 208884..208995 718..829 100 <- Minus
arm_4 209051..209149 619..717 100 <- Minus
arm_4 209204..209819 5..618 99   Minus

BS08075.complete Sequence

2225 bp assembled on 2008-01-03

GenBank Submission: FJ636091

> BS08075.complete
GAAGTTATCAGTCGACATGAGTGTTTTATCAAAATATGTTGACCGGATTG
CAGAAAAGTGTGAACATAATGGGTTTACAAAACACGCTTTTAGCTATGCT
CTAGTAACTAGTGCTATCCTAGCACTTACCATTAAAGTTACTATCCCTTA
CGTAAAAAACGTAAATACTACGTCTAGTGTAAGGACCCAAAAAGGAAAAA
CCAATGGCCAACTTTCACCATCGACAAGAGATAGCTCAGAAGAGGATTTC
AAGCTTGCAGAGGCCGAAAAGTTATTGGTTGCACAGCAGCTTAAAAAAAA
AGCTACAAATAATTTAGTTGAGCCTGGTCTAAATAAGGAGTTTTTAAAAC
ATTTGCAAATGTTGGCCAAAATAATGATTCCTCAGGCCTTCTGCTATGAA
ACAGGATTACTAAGCGTTCATACTTTTTGCTTGATTTCTCGAACATTTCT
TAGTATTTATGTTGCCGCATTGGAGGGAGCTCTTGTTAAATTTATAGTTC
GAAAGGATATTAAGCAATTTGCCCTTGTATTGCTTAAATGGTTTGGAATT
GCTATCCCTGCTACTTTCGTTAATTCTATGATACGGTTTCTCGAAAGTAA
ACTGTCTCTGGCGTTTCGAACTCGGCTTGTGCGTCACTCATATCGGCTCT
ATTTTAAAAACCAAAATTACTACAGAGTATCAAATTTGGACGGACGCATT
GAAAACGCGGATCATAGACTTACGGAAGATATTTCTGTGTTCGCAAATTC
TGTAGCTCATTTGTATAGTAGCCTGACTAAACCATGCTTCGATCTGATGC
TTATTGGCTTGGCACTAATGAGATCGTCTAAAAAAATGAAAGCTAACATT
ATAACTGGACCAGCATTATCAATCGGGGTTATTGCCCTTACAGCCCATAT
ATTAAGAATTGTTTCACCGAAGTTCGGACAGCTGGTATCGGAAGAAGCAA
ATAGATATGGGTATTTAAGACATATACACTCCCGCATAATAACAAATGCG
GAAGAAATTGCTTTTTACGGAGGTCATAAGGTGGAAATGCAGCAGCTAAG
GCAGGCATACAACCGCCTGGTAAATCAAATGACTACAATTTTTAACCAAA
AGCTTTGGTTTATAATGCTTGAACAATTTTTTATGAAATACGTTTGGTCG
GGTACTGGAATGATTATGGTATCACTTCCAATTTTGACCGGCAGTGACGT
AGGACTTGGAACCGTTCCCAACACGGCCATATCGGAATCCCGAGTTAGCG
AACGCACTCAATATCTAACTACTGCTAGAAATTTACTAATTTCCGCAGCA
GACGCGATTGAGCGATTAATGTCTTCTTACAAGGAAATCGTGTCGCTTGC
TGGCTACACATTTAGAGTGGCTGGTATGATGGATGTCTTTGAGGAAACTG
CTTTGGGAGTTTATTGCAAGACAAGTGTAATGGAATCCAATCAGTCGAAC
GGTATTATTGAGTTTCGTAATGGAAAACCAATAGCAAAGGGTCGCATAAT
CTATTCAGATGATCCGAAAAATATGTCAATTAGCCTTCGTGCAGTGCCAG
TGGTCACACCTAACTGTGATATAGTTGTACCAAAACTTACATTGTGCATA
GAGCCTGGTGTGCACTTGTTAATAACTGGGCCAAATGGATGTGGAAAATC
GAGCTTGTTTAGAATACTAAGTGGACTTTGGCCTATATACGCAGGGGAGT
TGCACATACCAAGGCCTGTGAAAGACGTTCCATGTATGTTTTACATTCCC
CAACGTCCATATATGTCAATCGGCAGCCTGTGTGATCAAATTATATACCC
TGACACGAGGGAAGATATGAAACGCAAGCATATAACTGAAAACGAGCTAA
GATCCATTTTGAAAATGGTCAGCCTTGAGCACATCGCTCAACGGGATAGC
TTTGACGTTGTTCGTGATTGGAAGGATATATTATCCGGAGGTGAAAAACA
ACGTATGGCGATAGCCCGTTTGTTTTATCATAGACCGCGCTATGCCCTTC
TTGATGAATGCACCAGTGCAGTATCTATAGATGTTGAAAGCTCGATTTAT
GAAATTGCTAAAGGAATGGGAATTACTTTGTTAACCATAACACACAGGCC
TACTTTGTGGAAATATCACACACATATTTTGGAGTTTGACGGTCTTGGAA
ACTGGCAGTTTAGAAAAATGAATTCAGATGAAGAACAAAAAGGACAATTT
CTATCGTAGAAGCTTTCTAGACCAT

BS08075.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2193 CG2316-PH 1..2193 17..2209 10965 100 Plus
CG2316-RC 2193 CG2316-PC 1..2193 17..2209 10965 100 Plus
CG2316-RD 2193 CG2316-PD 1..2193 17..2209 10965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-RH 2614 CG2316-RH 132..2324 17..2209 10965 100 Plus
CG2316-RC 2773 CG2316-RC 291..2483 17..2209 10965 100 Plus
CG2316-RD 2709 CG2316-RD 227..2419 17..2209 10965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 185977..186842 1894..1029 4330 100 Minus
4 1348131 4 188578..189179 618..17 3010 100 Minus
4 1348131 4 187994..188170 1033..857 885 100 Minus
4 1348131 4 188229..188372 858..715 720 100 Minus
4 1348131 4 184669..184798 2110..1981 650 100 Minus
4 1348131 4 184515..184615 2209..2109 505 100 Minus
4 1348131 4 188425..188528 717..614 505 99 Minus
4 1348131 4 185827..185917 1983..1893 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:03:38 has no hits.

BS08075.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:05 Download gff for BS08075.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RA 1..2193 17..2209 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:03 Download gff for BS08075.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RA 174..2366 17..2209 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:27 Download gff for BS08075.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 227..2419 17..2209 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:05 Download gff for BS08075.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RA 160..2366 5..2209 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:51 Download gff for BS08075.complete
Subject Subject Range Query Range Percent Splice Strand
CG2316-RD 227..2419 17..2209 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:51 Download gff for BS08075.complete
Subject Subject Range Query Range Percent Splice Strand
4 187997..188169 858..1030 100 <- Minus
4 188230..188369 718..857 100 <- Minus
4 188425..188523 619..717 100 <- Minus
4 184515..184614 2110..2209 100 <- Minus
4 184670..184795 1984..2109 100 <- Minus
4 185827..185916 1894..1983 100 <- Minus
4 185978..186840 1031..1893 100 <- Minus
4 188578..189179 17..618 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:27 Download gff for BS08075.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 205141..205240 2110..2209 100 <- Minus
arm_4 205296..205421 1984..2109 100 <- Minus
arm_4 206453..206542 1894..1983 100 <- Minus
arm_4 206604..207466 1031..1893 100 <- Minus
arm_4 208623..208795 858..1030 100 <- Minus
arm_4 208856..208995 718..857 100 <- Minus
arm_4 209051..209149 619..717 100 <- Minus
arm_4 209204..209805 17..618 100   Minus

BS08075.pep Sequence

Translation from 16 to 2208

> BS08075.pep
MSVLSKYVDRIAEKCEHNGFTKHAFSYALVTSAILALTIKVTIPYVKNVN
TTSSVRTQKGKTNGQLSPSTRDSSEEDFKLAEAEKLLVAQQLKKKATNNL
VEPGLNKEFLKHLQMLAKIMIPQAFCYETGLLSVHTFCLISRTFLSIYVA
ALEGALVKFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLESKLSLAF
RTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHLY
SSLTKPCFDLMLIGLALMRSSKKMKANIITGPALSIGVIALTAHILRIVS
PKFGQLVSEEANRYGYLRHIHSRIITNAEEIAFYGGHKVEMQQLRQAYNR
LVNQMTTIFNQKLWFIMLEQFFMKYVWSGTGMIMVSLPILTGSDVGLGTV
PNTAISESRVSERTQYLTTARNLLISAADAIERLMSSYKEIVSLAGYTFR
VAGMMDVFEETALGVYCKTSVMESNQSNGIIEFRNGKPIAKGRIIYSDDP
KNMSISLRAVPVVTPNCDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRI
LSGLWPIYAGELHIPRPVKDVPCMFYIPQRPYMSIGSLCDQIIYPDTRED
MKRKHITENELRSILKMVSLEHIAQRDSFDVVRDWKDILSGGEKQRMAIA
RLFYHRPRYALLDECTSAVSIDVESSIYEIAKGMGITLLTITHRPTLWKY
HTHILEFDGLGNWQFRKMNSDEEQKGQFLS*

BS08075.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2316-PH 730 CG2316-PH 1..730 1..730 3738 100 Plus
CG2316-PC 730 CG2316-PC 1..730 1..730 3738 100 Plus
CG2316-PD 730 CG2316-PD 1..730 1..730 3738 100 Plus
CG2316-PA 730 CG2316-PA 1..730 1..730 3738 100 Plus
CG2316-PG 730 CG2316-PG 1..730 1..730 3738 100 Plus