Clone Sequence Records
BS08075.3prime Sequence
859 bp (836 high quality bases) assembled on 2006-01-06
> BS08075.3prime
ATGGTCTAGAAAGCTTCTACGATAGAAATTGTCCTTTTTGTTCTTCATCT
GAATTCATTTTTCTAAACTGCCAGTTTCCAAGACCGTCAAACTCCAAAAT
ATGTGTGTGATATTTCCACAAAGTAGGCCTGTGTGTTATGGTTAACAAAG
TAATTCCCATTCCTTTAGCAATTTCATAAATCGAGCTTTCAACATCTATA
GATACTGCACTGGTGCATTCATCAAGAAGGGCATAGCGCGGTCTATGATA
AAACAAACGGGCTATCGCCATACGTTGTTTTTCACCTCCGGATAATATAT
CCTTCCAATCACGAACAACGTCAAAGCTATCCCGTTGAGCGATGTGCTCA
AGGCTGACCATTTTCAAAATGGATCTTAGCTCGTTTTCAGTTATATGCTT
GCGTTTCATATCTTCCCTCGTGTCAGGGTATATAATTTGATCACACAGGC
TGCCGATTGACATATATGGACGTTGGGGAATGTAAAACATACATGGAACG
TCTTTCACAGGCCTTGGTATGTGCAACTCCCCTGCGTATATAGGCCAAAG
TCCACTTAGTATTCTAAACAAGCTCGATTTTCCACATCCATTTGGCCCAG
TTATTAACAAGTGCACACCAGGCTCTATGCACAATGTAAGTTTTGGTACA
ACTATATCACAGTTAGGTGTGACCACTGGCACTGCACGAAGGCTAATTGA
CATATTTTTCGGATCATCTGAATAGATTATGCGACCCTTTGCTATTGGTT
TTCCATTACGAAACTCAATAATACCGTTCGACTGATTGGATTCCATTACA
CTTGTCTTGCAATAAACTCCCAAAGCAGTTTCCTCAAAGACATCCATCAT
ACCAGCCAC
BS08075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2316-PB | 2193 | CG2316-RB | 1351..2193 | 859..17 | 4215 | 100 | Minus |
CG2316-PG | 2193 | CG2316-RG | 1351..2193 | 859..17 | 4215 | 100 | Minus |
CG2316-PA | 2193 | CG2316-RA | 1351..2193 | 859..17 | 4215 | 100 | Minus |
CG2316-PE | 2193 | CG2316-RE | 1351..2193 | 859..17 | 4215 | 100 | Minus |
CG2316-PF | 1632 | CG2316-RF | 790..1632 | 859..17 | 4215 | 100 | Minus |
CG2316-PD | 2193 | CG2316-RD | 1351..2193 | 859..17 | 4215 | 100 | Minus |
CG2316-PC | 2193 | CG2316-RC | 1351..2193 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2316-RH | 2614 | CG2316-RH | 1482..2324 | 859..17 | 4215 | 100 | Minus |
CG2316-RC | 2773 | CG2316-RC | 1641..2483 | 859..17 | 4215 | 100 | Minus |
CG2316-RD | 2709 | CG2316-RD | 1577..2419 | 859..17 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 185977..186504 | 332..859 | 2640 | 100 | Plus |
4 | 1348131 | 4 | 184669..184798 | 116..245 | 650 | 100 | Plus |
4 | 1348131 | 4 | 184515..184615 | 17..117 | 505 | 100 | Plus |
4 | 1348131 | 4 | 185827..185917 | 243..333 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:28:52 has no hits.
BS08075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:51 Download gff for
BS08075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-PF | 790..1632 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:43 Download gff for
BS08075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-PC | 1351..2193 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:32:48 Download gff for
BS08075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RD | 1577..2419 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:47 Download gff for
BS08075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RD | 1577..2419 | 17..859 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:47 Download gff for
BS08075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 184515..184614 | 17..116 | 100 | <- | Plus |
4 | 184670..184795 | 117..242 | 100 | <- | Plus |
4 | 185827..185916 | 243..332 | 100 | <- | Plus |
4 | 185978..186504 | 333..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:32:48 Download gff for
BS08075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 205141..205240 | 17..116 | 100 | <- | Plus |
arm_4 | 205296..205421 | 117..242 | 100 | <- | Plus |
arm_4 | 206453..206542 | 243..332 | 100 | <- | Plus |
arm_4 | 206604..207130 | 333..859 | 100 | | Plus |
BS08075.5prime Sequence
830 bp (803 high quality bases) assembled on 2006-01-06
> BS08075.5prime
GAAGTTATCAGTCGACATGAGTGTTTTATCAAAATATGTTGACCGGATTG
CAGAAAAGTGTGAACATAATGGGTTTACAAAACACGCTTTTAGCTATGCT
CTAGTAACTAGTGCTATCCTAGCACTTACCATTAAAGTTACTATCCCTTA
CGTAAAAAACGTAAATACTACGTCTAGTGTAAGGACCCAAAAAGGAAAAA
CCAATGGCCAACTTTCACCATCGACAAGAGATAGCTCAGAAGAGGATTTC
AAGCTTGCAGAGGCCGAAAAGTTATTGGTTGCACAGCAGCTTAAAAAAAA
AGCTACAAATAATTTAGTTGAGCCTGGTCTAAATAAGGAGTTTTTAAAAC
ATTTGCAAATGTTGGCCAAAATAATGATTCCTCAGGCCTTCTGCTATGAA
ACAGGATTACTAAGCGTTCATACTTTTTGCTTGATTTCTCGAACATTTCT
TAGTATTTATGTTGCCGCATTGGAGGGAGCTCTTGTTAAATTTATAGTTC
GAAAGGATATTAAGCAATTTGCCCTTGTATTGCTTAAATGGTTTGGAATT
GCTATCCCTGCTACTTTCGTTAATTCTATGATACGGTTTCTCGAAAGTAA
ACTGTCTCTGGCGTTTCGAACTCGGCTTGTGCGTCACTCATATCGGCTCT
ATTTTAAAAACCAAAATTACTACAGAGTATCAAATTTGGACGGACGCATT
GAAAACGCGGATCATAGACTTACGGAAGATATTTCTGTGTTCGCAAATTC
TGTAGCTCATTTGTATAGTAGCCTGACTAAACCATGCTTCGATCTGATGC
TTATTGGCTTGGCACTAATGAGATCGTCTA
BS08075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2316-PB | 2193 | CG2316-RB | 1..814 | 17..830 | 4070 | 100 | Plus |
CG2316-PG | 2193 | CG2316-RG | 1..814 | 17..830 | 4070 | 100 | Plus |
CG2316-PA | 2193 | CG2316-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
CG2316-PE | 2193 | CG2316-RE | 1..814 | 17..830 | 4070 | 100 | Plus |
CG2316-PD | 2193 | CG2316-RD | 1..814 | 17..830 | 4070 | 100 | Plus |
CG2316-PC | 2193 | CG2316-RC | 1..814 | 17..830 | 4070 | 100 | Plus |
CG2316-PF | 1632 | CG2316-RF | 1..253 | 578..830 | 1265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2316-RH | 2614 | CG2316-RH | 132..945 | 17..830 | 4070 | 100 | Plus |
CG2316-RC | 2773 | CG2316-RC | 291..1104 | 17..830 | 4070 | 100 | Plus |
CG2316-RD | 2709 | CG2316-RD | 227..1040 | 17..830 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 188578..189179 | 618..17 | 3010 | 100 | Minus |
4 | 1348131 | 4 | 188257..188372 | 830..715 | 580 | 100 | Minus |
4 | 1348131 | 4 | 188425..188528 | 717..614 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:04:49 has no hits.
BS08075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:52 Download gff for
BS08075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-PC | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:44 Download gff for
BS08075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:03:16 Download gff for
BS08075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RD | 213..1039 | 5..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:57 Download gff for
BS08075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RD | 213..1039 | 5..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:57 Download gff for
BS08075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 188258..188369 | 718..829 | 100 | <- | Minus |
4 | 188425..188523 | 619..717 | 100 | <- | Minus |
4 | 188578..189193 | 5..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:03:16 Download gff for
BS08075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 208884..208995 | 718..829 | 100 | <- | Minus |
arm_4 | 209051..209149 | 619..717 | 100 | <- | Minus |
arm_4 | 209204..209819 | 5..618 | 99 | | Minus |
BS08075.complete Sequence
2225 bp assembled on 2008-01-03
GenBank Submission: FJ636091
> BS08075.complete
GAAGTTATCAGTCGACATGAGTGTTTTATCAAAATATGTTGACCGGATTG
CAGAAAAGTGTGAACATAATGGGTTTACAAAACACGCTTTTAGCTATGCT
CTAGTAACTAGTGCTATCCTAGCACTTACCATTAAAGTTACTATCCCTTA
CGTAAAAAACGTAAATACTACGTCTAGTGTAAGGACCCAAAAAGGAAAAA
CCAATGGCCAACTTTCACCATCGACAAGAGATAGCTCAGAAGAGGATTTC
AAGCTTGCAGAGGCCGAAAAGTTATTGGTTGCACAGCAGCTTAAAAAAAA
AGCTACAAATAATTTAGTTGAGCCTGGTCTAAATAAGGAGTTTTTAAAAC
ATTTGCAAATGTTGGCCAAAATAATGATTCCTCAGGCCTTCTGCTATGAA
ACAGGATTACTAAGCGTTCATACTTTTTGCTTGATTTCTCGAACATTTCT
TAGTATTTATGTTGCCGCATTGGAGGGAGCTCTTGTTAAATTTATAGTTC
GAAAGGATATTAAGCAATTTGCCCTTGTATTGCTTAAATGGTTTGGAATT
GCTATCCCTGCTACTTTCGTTAATTCTATGATACGGTTTCTCGAAAGTAA
ACTGTCTCTGGCGTTTCGAACTCGGCTTGTGCGTCACTCATATCGGCTCT
ATTTTAAAAACCAAAATTACTACAGAGTATCAAATTTGGACGGACGCATT
GAAAACGCGGATCATAGACTTACGGAAGATATTTCTGTGTTCGCAAATTC
TGTAGCTCATTTGTATAGTAGCCTGACTAAACCATGCTTCGATCTGATGC
TTATTGGCTTGGCACTAATGAGATCGTCTAAAAAAATGAAAGCTAACATT
ATAACTGGACCAGCATTATCAATCGGGGTTATTGCCCTTACAGCCCATAT
ATTAAGAATTGTTTCACCGAAGTTCGGACAGCTGGTATCGGAAGAAGCAA
ATAGATATGGGTATTTAAGACATATACACTCCCGCATAATAACAAATGCG
GAAGAAATTGCTTTTTACGGAGGTCATAAGGTGGAAATGCAGCAGCTAAG
GCAGGCATACAACCGCCTGGTAAATCAAATGACTACAATTTTTAACCAAA
AGCTTTGGTTTATAATGCTTGAACAATTTTTTATGAAATACGTTTGGTCG
GGTACTGGAATGATTATGGTATCACTTCCAATTTTGACCGGCAGTGACGT
AGGACTTGGAACCGTTCCCAACACGGCCATATCGGAATCCCGAGTTAGCG
AACGCACTCAATATCTAACTACTGCTAGAAATTTACTAATTTCCGCAGCA
GACGCGATTGAGCGATTAATGTCTTCTTACAAGGAAATCGTGTCGCTTGC
TGGCTACACATTTAGAGTGGCTGGTATGATGGATGTCTTTGAGGAAACTG
CTTTGGGAGTTTATTGCAAGACAAGTGTAATGGAATCCAATCAGTCGAAC
GGTATTATTGAGTTTCGTAATGGAAAACCAATAGCAAAGGGTCGCATAAT
CTATTCAGATGATCCGAAAAATATGTCAATTAGCCTTCGTGCAGTGCCAG
TGGTCACACCTAACTGTGATATAGTTGTACCAAAACTTACATTGTGCATA
GAGCCTGGTGTGCACTTGTTAATAACTGGGCCAAATGGATGTGGAAAATC
GAGCTTGTTTAGAATACTAAGTGGACTTTGGCCTATATACGCAGGGGAGT
TGCACATACCAAGGCCTGTGAAAGACGTTCCATGTATGTTTTACATTCCC
CAACGTCCATATATGTCAATCGGCAGCCTGTGTGATCAAATTATATACCC
TGACACGAGGGAAGATATGAAACGCAAGCATATAACTGAAAACGAGCTAA
GATCCATTTTGAAAATGGTCAGCCTTGAGCACATCGCTCAACGGGATAGC
TTTGACGTTGTTCGTGATTGGAAGGATATATTATCCGGAGGTGAAAAACA
ACGTATGGCGATAGCCCGTTTGTTTTATCATAGACCGCGCTATGCCCTTC
TTGATGAATGCACCAGTGCAGTATCTATAGATGTTGAAAGCTCGATTTAT
GAAATTGCTAAAGGAATGGGAATTACTTTGTTAACCATAACACACAGGCC
TACTTTGTGGAAATATCACACACATATTTTGGAGTTTGACGGTCTTGGAA
ACTGGCAGTTTAGAAAAATGAATTCAGATGAAGAACAAAAAGGACAATTT
CTATCGTAGAAGCTTTCTAGACCAT
BS08075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2316-RH | 2193 | CG2316-PH | 1..2193 | 17..2209 | 10965 | 100 | Plus |
CG2316-RC | 2193 | CG2316-PC | 1..2193 | 17..2209 | 10965 | 100 | Plus |
CG2316-RD | 2193 | CG2316-PD | 1..2193 | 17..2209 | 10965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2316-RH | 2614 | CG2316-RH | 132..2324 | 17..2209 | 10965 | 100 | Plus |
CG2316-RC | 2773 | CG2316-RC | 291..2483 | 17..2209 | 10965 | 100 | Plus |
CG2316-RD | 2709 | CG2316-RD | 227..2419 | 17..2209 | 10965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 185977..186842 | 1894..1029 | 4330 | 100 | Minus |
4 | 1348131 | 4 | 188578..189179 | 618..17 | 3010 | 100 | Minus |
4 | 1348131 | 4 | 187994..188170 | 1033..857 | 885 | 100 | Minus |
4 | 1348131 | 4 | 188229..188372 | 858..715 | 720 | 100 | Minus |
4 | 1348131 | 4 | 184669..184798 | 2110..1981 | 650 | 100 | Minus |
4 | 1348131 | 4 | 184515..184615 | 2209..2109 | 505 | 100 | Minus |
4 | 1348131 | 4 | 188425..188528 | 717..614 | 505 | 99 | Minus |
4 | 1348131 | 4 | 185827..185917 | 1983..1893 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:03:38 has no hits.
BS08075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:05 Download gff for
BS08075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RA | 1..2193 | 17..2209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:03 Download gff for
BS08075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RA | 174..2366 | 17..2209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:27 Download gff for
BS08075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RD | 227..2419 | 17..2209 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:05 Download gff for
BS08075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RA | 160..2366 | 5..2209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:51 Download gff for
BS08075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2316-RD | 227..2419 | 17..2209 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:51 Download gff for
BS08075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 187997..188169 | 858..1030 | 100 | <- | Minus |
4 | 188230..188369 | 718..857 | 100 | <- | Minus |
4 | 188425..188523 | 619..717 | 100 | <- | Minus |
4 | 184515..184614 | 2110..2209 | 100 | <- | Minus |
4 | 184670..184795 | 1984..2109 | 100 | <- | Minus |
4 | 185827..185916 | 1894..1983 | 100 | <- | Minus |
4 | 185978..186840 | 1031..1893 | 100 | <- | Minus |
4 | 188578..189179 | 17..618 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:27 Download gff for
BS08075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 205141..205240 | 2110..2209 | 100 | <- | Minus |
arm_4 | 205296..205421 | 1984..2109 | 100 | <- | Minus |
arm_4 | 206453..206542 | 1894..1983 | 100 | <- | Minus |
arm_4 | 206604..207466 | 1031..1893 | 100 | <- | Minus |
arm_4 | 208623..208795 | 858..1030 | 100 | <- | Minus |
arm_4 | 208856..208995 | 718..857 | 100 | <- | Minus |
arm_4 | 209051..209149 | 619..717 | 100 | <- | Minus |
arm_4 | 209204..209805 | 17..618 | 100 | | Minus |
BS08075.pep Sequence
Translation from 16 to 2208
> BS08075.pep
MSVLSKYVDRIAEKCEHNGFTKHAFSYALVTSAILALTIKVTIPYVKNVN
TTSSVRTQKGKTNGQLSPSTRDSSEEDFKLAEAEKLLVAQQLKKKATNNL
VEPGLNKEFLKHLQMLAKIMIPQAFCYETGLLSVHTFCLISRTFLSIYVA
ALEGALVKFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLESKLSLAF
RTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHRLTEDISVFANSVAHLY
SSLTKPCFDLMLIGLALMRSSKKMKANIITGPALSIGVIALTAHILRIVS
PKFGQLVSEEANRYGYLRHIHSRIITNAEEIAFYGGHKVEMQQLRQAYNR
LVNQMTTIFNQKLWFIMLEQFFMKYVWSGTGMIMVSLPILTGSDVGLGTV
PNTAISESRVSERTQYLTTARNLLISAADAIERLMSSYKEIVSLAGYTFR
VAGMMDVFEETALGVYCKTSVMESNQSNGIIEFRNGKPIAKGRIIYSDDP
KNMSISLRAVPVVTPNCDIVVPKLTLCIEPGVHLLITGPNGCGKSSLFRI
LSGLWPIYAGELHIPRPVKDVPCMFYIPQRPYMSIGSLCDQIIYPDTRED
MKRKHITENELRSILKMVSLEHIAQRDSFDVVRDWKDILSGGEKQRMAIA
RLFYHRPRYALLDECTSAVSIDVESSIYEIAKGMGITLLTITHRPTLWKY
HTHILEFDGLGNWQFRKMNSDEEQKGQFLS*
BS08075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2316-PH | 730 | CG2316-PH | 1..730 | 1..730 | 3738 | 100 | Plus |
CG2316-PC | 730 | CG2316-PC | 1..730 | 1..730 | 3738 | 100 | Plus |
CG2316-PD | 730 | CG2316-PD | 1..730 | 1..730 | 3738 | 100 | Plus |
CG2316-PA | 730 | CG2316-PA | 1..730 | 1..730 | 3738 | 100 | Plus |
CG2316-PG | 730 | CG2316-PG | 1..730 | 1..730 | 3738 | 100 | Plus |