Clone Sequence Records
BS08077.3prime Sequence
887 bp (862 high quality bases) assembled on 2006-01-06
> BS08077.3prime
ATGGTCTAGAAAGCTTTCAGTTCTGTTTAACAAAACGTCCGACTAGCAGG
TGATTCTTTGGCGTACACTGTTCGGGCTTTAAGCGTGTGAGAATGACCTG
GTAGCCCGCCTCCTCCGCCTGCAGCAGGCGATCGGTGTCCACCACGGACA
TGCAGTGGAGTCCTTGAAGCGTGGTTTCTGGCTTGCAGTTGGTTGTCCCC
ATCTCGTGTGCCTGATCTGCCGAGTGGGCAATGTACAAGTAGTCCTTTGT
GTCTAACACCTTTTGGAACGCTTTGCTCAATGGGTACGAAATGTGAGGCA
TGGGCTGCAGAGAACCGTAGCAGCAAGGACAGCAAACAAAATGTGCCTTG
GCTCTCCGGCACTGCTGCAAAACGATATCTGTCGCCGTTCCACACGCGTG
CAAAGAGGCCCCGATCTTGAATCCTCCGACAAAGTAATCTATGTTGCATT
GGTAAAAAACGCAGTTGGTCAAACCCAATTCGTTTGATCTTTTCTGAGCT
TGAAGCAGGGAGAAAGCTTTGTTTTCCATCACAATAATGGTACAATTTGG
CAGCTTGAGGGCCAGCAGTATGGCCAAATGCCCTGTGCCGCTGCAGAAGT
CCACAATGCGGTCGCCCGGTTGAGCCAGGGAAACCACCGCATTGGCCAAG
TTCTCTAGCTGCTGCCTCTTGCGCTCGAGTCTCTCCTTGGGCAGCGCTGA
ACTCTTAGCATGAGTGGGCTCAATCTGCTCCCAGTCGATCAGCTGCTGGC
CATAGGTGTGCTCCGAATCGGAATTAAATTGCAGTTGCAGCGAGGAAAGC
TTACTTAGAGCCGCTTCCAACTCCAACTGACTAGTGTAAATCCGATTTCT
TGGCTTGTATCGCTTGGGATCGGCTTTGTACAGACTG
BS08077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-PA | 1758 | CG10428-RA | 888..1758 | 887..17 | 4330 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1921 | CG10428-RA | 1002..1873 | 887..16 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18950054..18950925 | 887..16 | 4345 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:40:23 has no hits.
BS08077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:55 Download gff for
BS08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 888..1758 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:48 Download gff for
BS08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 888..1758 | 17..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:04 Download gff for
BS08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 1002..1876 | 11..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:00 Download gff for
BS08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 1002..1876 | 11..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:00 Download gff for
BS08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18950054..18950928 | 11..887 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:04 Download gff for
BS08077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18950054..18950928 | 11..887 | 99 | | Minus |
BS08077.5prime Sequence
946 bp (831 high quality bases) assembled on 2006-01-06
> BS08077.5prime
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAAGACCCCTCCCGGAGAACTGGGAATCCCCGACTGCGAGGC
CACCAGTCTGTACAAAGCCGATCCCAAGCGATACAAGCCAAGAAAT
BS08077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-PA | 1758 | CG10428-RA | 1..930 | 17..946 | 4650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1921 | CG10428-RA | 115..1044 | 17..946 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18949428..18949894 | 330..796 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 18949200..18949372 | 158..330 | 865 | 100 | Plus |
2L | 23513712 | 2L | 18949945..18950096 | 795..946 | 760 | 100 | Plus |
2L | 23513712 | 2L | 18948998..18949141 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:23:24 has no hits.
BS08077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:56 Download gff for
BS08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:49 Download gff for
BS08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-PA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:43 Download gff for
BS08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..1044 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:51 Download gff for
BS08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..1044 | 17..946 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:51 Download gff for
BS08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18949947..18950096 | 797..946 | 100 | | Plus |
2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:43 Download gff for
BS08077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
arm_2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
arm_2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
arm_2L | 18949947..18950096 | 797..946 | 100 | | Plus |
BS08077.complete Sequence
1790 bp assembled on 2007-10-17
> BS08077.complete
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAAGACCCCTCCCGGAGAACTGGGAATCCCCGACTGCGAGGC
CACCAGTCTGTACAAAGCCGATCCCAAGCGATACAAGCCAAGAAATCGGA
TTTACACTAGTCAGTTGGAGTTGGAAGCGGCTCTAAGTAAGCTTTCCTCG
CTGCAACTGCAATTTAATTCCGATTCGGAGCACACCTATGGCCAGCAGCT
GATCGACTGGGAGCAGATTGAGCCCACTCATGCTAAGAGTTCAGCGCTGC
CCAAGGAGAGACTCGAGCGCAAGAGGCAGCAGCTAGAGAACTTGGCCAAT
GCGGTGGTTTCCCTGGCTCAACCGGGCGACCGCATTGTGGACTTCTGCAG
CGGCACAGGGCATTTGGCCATACTGCTGGCCCTCAAGCTGCCAAATTGTA
CCATTATTGTGATGGAAAACAAAGCTTTCTCCCTGCTTCAAGCTCAGAAA
AGATCAAACGAATTGGGTTTGACCAACTGCGTTTTTTACCAATGCAACAT
AGATTACTTTGTCGGAGGATTCAAGATCGGGGCCTCTTTGCACGCGTGTG
GAACGGCGACAGATATCGTTTTGCAGCAGTGCCGGAGAGCCAAGGCACAT
TTTGTTTGCTGTCCTTGCTGCTACGGTTCTCTGCAGCCCATGCCTCACAT
TTCGTACCCATTGAGCAAAGCGTTCCAAAAGGTGTTAGACACAAAGGACT
ACTTGTACATTGCCCACTCGGCAGATCAGGCACACGAGATGGGGACAACC
AACTGCAAGCCAGAAACCACGCTTCAAGGACTCCACTGCATGTCCGTGGT
GGACACCGATCGCCTGCTGCAGGCGGAGGAGGCGGGCTACCAGGTCATTC
TCACACGCTTAAAGCCCGAACAGTGTACGCCAAAGAATCACCTGCTAGTC
GGACGTTTTGTTAAACAGAACTGAAAGCTTTCTAGACCAT
BS08077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1758 | CG10428-PA | 1..1758 | 17..1774 | 8775 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-RA | 1921 | CG10428-RA | 115..1873 | 17..1775 | 8780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18949945..18950925 | 795..1775 | 4890 | 99.9 | Plus |
2L | 23513712 | 2L | 18949428..18949894 | 330..796 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 18949200..18949372 | 158..330 | 865 | 100 | Plus |
2L | 23513712 | 2L | 18948998..18949141 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:39 has no hits.
BS08077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:08 Download gff for
BS08077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 1..1758 | 17..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:54 Download gff for
BS08077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 102..1863 | 17..1780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:57 Download gff for
BS08077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..1871 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:25 Download gff for
BS08077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 102..1858 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:31 Download gff for
BS08077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10428-RA | 115..1871 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:31 Download gff for
BS08077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
2L | 18949947..18950923 | 797..1773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:57 Download gff for
BS08077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18948998..18949141 | 17..160 | 100 | -> | Plus |
arm_2L | 18949203..18949372 | 161..330 | 100 | -> | Plus |
arm_2L | 18949429..18949894 | 331..796 | 100 | -> | Plus |
arm_2L | 18949947..18950923 | 797..1773 | 99 | | Plus |
BS08077.pep Sequence
Translation from 16 to 1773
> BS08077.pep
MDQLYLEIEISTQKETTIYTGVSSFLALFTYKFLKDPKNVRVNFVSTKIE
GGKIALRSSQLKKELTDRHITCRDAASLPAIQDLKLPIYEKDGNTFIAGT
CAVCRELIARQPNEELKKLLGFKGSCLLAPSEASIWTKFCEVDLVAVVSK
LHSGQVLEFVPQEVVRFEQHMNEPVRMHNIYKQAREQANQTENGGKVKRR
ERVQIKCTTPKEELLIEHRFAEGISFTIADIILYPLLRIVFQHCGQMLPH
FPLTSTWFSEIDSFGDKCARVLRDLYVPQAIKTPPGELGIPDCEATSLYK
ADPKRYKPRNRIYTSQLELEAALSKLSSLQLQFNSDSEHTYGQQLIDWEQ
IEPTHAKSSALPKERLERKRQQLENLANAVVSLAQPGDRIVDFCSGTGHL
AILLALKLPNCTIIVMENKAFSLLQAQKRSNELGLTNCVFYQCNIDYFVG
GFKIGASLHACGTATDIVLQQCRRAKAHFVCCPCCYGSLQPMPHISYPLS
KAFQKVLDTKDYLYIAHSADQAHEMGTTNCKPETTLQGLHCMSVVDTDRL
LQAEEAGYQVILTRLKPEQCTPKNHLLVGRFVKQN*
BS08077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10428-PA | 585 | CG10428-PA | 1..585 | 1..585 | 3061 | 100 | Plus |