Clone BS08077 Report

Search the DGRC for BS08077

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG10428-RA
Protein status:BS08077.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08077.3prime Sequence

887 bp (862 high quality bases) assembled on 2006-01-06

> BS08077.3prime
ATGGTCTAGAAAGCTTTCAGTTCTGTTTAACAAAACGTCCGACTAGCAGG
TGATTCTTTGGCGTACACTGTTCGGGCTTTAAGCGTGTGAGAATGACCTG
GTAGCCCGCCTCCTCCGCCTGCAGCAGGCGATCGGTGTCCACCACGGACA
TGCAGTGGAGTCCTTGAAGCGTGGTTTCTGGCTTGCAGTTGGTTGTCCCC
ATCTCGTGTGCCTGATCTGCCGAGTGGGCAATGTACAAGTAGTCCTTTGT
GTCTAACACCTTTTGGAACGCTTTGCTCAATGGGTACGAAATGTGAGGCA
TGGGCTGCAGAGAACCGTAGCAGCAAGGACAGCAAACAAAATGTGCCTTG
GCTCTCCGGCACTGCTGCAAAACGATATCTGTCGCCGTTCCACACGCGTG
CAAAGAGGCCCCGATCTTGAATCCTCCGACAAAGTAATCTATGTTGCATT
GGTAAAAAACGCAGTTGGTCAAACCCAATTCGTTTGATCTTTTCTGAGCT
TGAAGCAGGGAGAAAGCTTTGTTTTCCATCACAATAATGGTACAATTTGG
CAGCTTGAGGGCCAGCAGTATGGCCAAATGCCCTGTGCCGCTGCAGAAGT
CCACAATGCGGTCGCCCGGTTGAGCCAGGGAAACCACCGCATTGGCCAAG
TTCTCTAGCTGCTGCCTCTTGCGCTCGAGTCTCTCCTTGGGCAGCGCTGA
ACTCTTAGCATGAGTGGGCTCAATCTGCTCCCAGTCGATCAGCTGCTGGC
CATAGGTGTGCTCCGAATCGGAATTAAATTGCAGTTGCAGCGAGGAAAGC
TTACTTAGAGCCGCTTCCAACTCCAACTGACTAGTGTAAATCCGATTTCT
TGGCTTGTATCGCTTGGGATCGGCTTTGTACAGACTG

BS08077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 1758 CG10428-RA 888..1758 887..17 4330 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1921 CG10428-RA 1002..1873 887..16 4345 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18950054..18950925 887..16 4345 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 18:40:23 has no hits.

BS08077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:55 Download gff for BS08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 888..1758 17..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:48 Download gff for BS08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 888..1758 17..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:04 Download gff for BS08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1002..1876 11..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:00 Download gff for BS08077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1002..1876 11..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:00 Download gff for BS08077.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18950054..18950928 11..887 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:04 Download gff for BS08077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18950054..18950928 11..887 99   Minus

BS08077.5prime Sequence

946 bp (831 high quality bases) assembled on 2006-01-06

> BS08077.5prime
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAAGACCCCTCCCGGAGAACTGGGAATCCCCGACTGCGAGGC
CACCAGTCTGTACAAAGCCGATCCCAAGCGATACAAGCCAAGAAAT

BS08077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 1758 CG10428-RA 1..930 17..946 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1921 CG10428-RA 115..1044 17..946 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18949428..18949894 330..796 2335 100 Plus
2L 23513712 2L 18949200..18949372 158..330 865 100 Plus
2L 23513712 2L 18949945..18950096 795..946 760 100 Plus
2L 23513712 2L 18948998..18949141 17..160 720 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:23:24 has no hits.

BS08077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:56 Download gff for BS08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 1..930 17..946 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:49 Download gff for BS08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-PA 1..930 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:43 Download gff for BS08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..1044 17..946 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:51 Download gff for BS08077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..1044 17..946 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:51 Download gff for BS08077.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18949947..18950096 797..946 100   Plus
2L 18948998..18949141 17..160 100 -> Plus
2L 18949203..18949372 161..330 100 -> Plus
2L 18949429..18949894 331..796 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:43 Download gff for BS08077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18948998..18949141 17..160 100 -> Plus
arm_2L 18949203..18949372 161..330 100 -> Plus
arm_2L 18949429..18949894 331..796 100 -> Plus
arm_2L 18949947..18950096 797..946 100   Plus

BS08077.complete Sequence

1790 bp assembled on 2007-10-17

> BS08077.complete
GAAGTTATCAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCA
CTCAAAAAGAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTG
TTTACTTACAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGT
TTCCACAAAGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCA
AAAAGGAACTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTG
CCTGCCATCCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATAC
ATTCATAGCAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAAC
CAAATGAGGAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTG
GCTCCGTCAGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGT
GGCTGTTGTCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCC
AAGAAGTAGTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCAT
AACATCTATAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGG
CAAGGTCAAGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGG
AAGAGCTGCTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATT
GCGGATATAATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGG
GCAGATGCTGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCG
ACTCTTTCGGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCG
CAAGCAATTAAGACCCCTCCCGGAGAACTGGGAATCCCCGACTGCGAGGC
CACCAGTCTGTACAAAGCCGATCCCAAGCGATACAAGCCAAGAAATCGGA
TTTACACTAGTCAGTTGGAGTTGGAAGCGGCTCTAAGTAAGCTTTCCTCG
CTGCAACTGCAATTTAATTCCGATTCGGAGCACACCTATGGCCAGCAGCT
GATCGACTGGGAGCAGATTGAGCCCACTCATGCTAAGAGTTCAGCGCTGC
CCAAGGAGAGACTCGAGCGCAAGAGGCAGCAGCTAGAGAACTTGGCCAAT
GCGGTGGTTTCCCTGGCTCAACCGGGCGACCGCATTGTGGACTTCTGCAG
CGGCACAGGGCATTTGGCCATACTGCTGGCCCTCAAGCTGCCAAATTGTA
CCATTATTGTGATGGAAAACAAAGCTTTCTCCCTGCTTCAAGCTCAGAAA
AGATCAAACGAATTGGGTTTGACCAACTGCGTTTTTTACCAATGCAACAT
AGATTACTTTGTCGGAGGATTCAAGATCGGGGCCTCTTTGCACGCGTGTG
GAACGGCGACAGATATCGTTTTGCAGCAGTGCCGGAGAGCCAAGGCACAT
TTTGTTTGCTGTCCTTGCTGCTACGGTTCTCTGCAGCCCATGCCTCACAT
TTCGTACCCATTGAGCAAAGCGTTCCAAAAGGTGTTAGACACAAAGGACT
ACTTGTACATTGCCCACTCGGCAGATCAGGCACACGAGATGGGGACAACC
AACTGCAAGCCAGAAACCACGCTTCAAGGACTCCACTGCATGTCCGTGGT
GGACACCGATCGCCTGCTGCAGGCGGAGGAGGCGGGCTACCAGGTCATTC
TCACACGCTTAAAGCCCGAACAGTGTACGCCAAAGAATCACCTGCTAGTC
GGACGTTTTGTTAAACAGAACTGAAAGCTTTCTAGACCAT

BS08077.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1758 CG10428-PA 1..1758 17..1774 8775 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-RA 1921 CG10428-RA 115..1873 17..1775 8780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18949945..18950925 795..1775 4890 99.9 Plus
2L 23513712 2L 18949428..18949894 330..796 2335 100 Plus
2L 23513712 2L 18949200..18949372 158..330 865 100 Plus
2L 23513712 2L 18948998..18949141 17..160 720 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:16:39 has no hits.

BS08077.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:08 Download gff for BS08077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 1..1758 17..1774 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:54 Download gff for BS08077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 102..1863 17..1780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:57 Download gff for BS08077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..1871 17..1773 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:25 Download gff for BS08077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 102..1858 17..1773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:31 Download gff for BS08077.complete
Subject Subject Range Query Range Percent Splice Strand
CG10428-RA 115..1871 17..1773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:31 Download gff for BS08077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18948998..18949141 17..160 100 -> Plus
2L 18949203..18949372 161..330 100 -> Plus
2L 18949429..18949894 331..796 100 -> Plus
2L 18949947..18950923 797..1773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:57 Download gff for BS08077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18948998..18949141 17..160 100 -> Plus
arm_2L 18949203..18949372 161..330 100 -> Plus
arm_2L 18949429..18949894 331..796 100 -> Plus
arm_2L 18949947..18950923 797..1773 99   Plus

BS08077.pep Sequence

Translation from 16 to 1773

> BS08077.pep
MDQLYLEIEISTQKETTIYTGVSSFLALFTYKFLKDPKNVRVNFVSTKIE
GGKIALRSSQLKKELTDRHITCRDAASLPAIQDLKLPIYEKDGNTFIAGT
CAVCRELIARQPNEELKKLLGFKGSCLLAPSEASIWTKFCEVDLVAVVSK
LHSGQVLEFVPQEVVRFEQHMNEPVRMHNIYKQAREQANQTENGGKVKRR
ERVQIKCTTPKEELLIEHRFAEGISFTIADIILYPLLRIVFQHCGQMLPH
FPLTSTWFSEIDSFGDKCARVLRDLYVPQAIKTPPGELGIPDCEATSLYK
ADPKRYKPRNRIYTSQLELEAALSKLSSLQLQFNSDSEHTYGQQLIDWEQ
IEPTHAKSSALPKERLERKRQQLENLANAVVSLAQPGDRIVDFCSGTGHL
AILLALKLPNCTIIVMENKAFSLLQAQKRSNELGLTNCVFYQCNIDYFVG
GFKIGASLHACGTATDIVLQQCRRAKAHFVCCPCCYGSLQPMPHISYPLS
KAFQKVLDTKDYLYIAHSADQAHEMGTTNCKPETTLQGLHCMSVVDTDRL
LQAEEAGYQVILTRLKPEQCTPKNHLLVGRFVKQN*

BS08077.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10428-PA 585 CG10428-PA 1..585 1..585 3061 100 Plus