Clone BS08078 Report

Search the DGRC for BS08078

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptArpc2-RA
Protein status:BS08078.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08078.3prime Sequence

936 bp (793 high quality bases) assembled on 2006-01-06

> BS08078.3prime
ATGGTCTAGAAAGCTTTCAATCGATGCGCTTGAAAGTTCTCCCCGTTATA
GTTTTCTTCTCCGTGTTTTTGGGCTCTGGCCTTGCACGATTTAGCACCTT
GAGGAAATCCGAGGTTTTTGCTCGCATGCGCGAATGAATGTAAGCCTTTG
AACACTTAATGTGGTAGTGCAAGTAATCTCGGAACATGTGAATTAAGTTA
ATGGTATTGTCCCTTGTTTCTTTGTTGGTATGCCGAGGGAAGAGTACGAA
TGTGACATAGCCAATGTTGTCGCCCACCCTAGCGTCCGTGTTGGCCAATT
CCAATGGTGGTTCTCGGTGCGAAAAGAGCACTTGTGGTGCGGTGTGCGAG
GCACGCCGACCTTCCCTCAATTCCTGCATAAATACTTTGCCGATAATGAC
ATCGTCTTCGTCCCGGAAAATGGTACTAAAGACGACGGTGACACGATCAG
GCTTGGCTTCCACATATAAAGTCTCATCGTTGCGGTAGTTAATGACGGCA
CGCTTTTGGCCCTCTTCGCCCTGCTCCTGATAGTCAAAATACTTTTCAAA
AACCGATGCGAAACAGTTGCGCTTCAGCAGTCCGATTCTCTTTGCGATTT
GCTCGCAGTCCTCGGGAATCTCCTCCAGGTTGATAAGTACGGAAACATTG
TAGCCTTCTTCCGTGTCTGTAAGCAGACTGCCATATTCACGCTTCAGCAA
CTCGTCGGCTCCATGTTCTTGCAGCTGTTTGTAGAACTTCAGCGATATGC
TGATCCGAACTTTTGTTTTATCGCCATTCACATTGGAAATGTGATAAAGG
ACGCCGTCGAAGTCTGCTATTCGTATGTCTATCGATTCAGGCTTCAGTCC
AGCCTGGGCATTACGGTATTTGACCAGCAGCGTCTCCTCGATAATCCGAT
TATTGATTTCCAGCAGGATCATGTCGACTGATAACT

BS08078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10954-PA 906 Arc-p34-RA 1..906 922..17 4530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc2-RB 1974 CG10954-RB 537..1443 923..17 4535 100 Minus
Arpc2-RA 1941 CG10954-RA 504..1410 923..17 4535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20420897..20421117 467..247 1105 100 Minus
2L 23513712 2L 20420646..20420834 656..468 945 100 Minus
2L 23513712 2L 20422300..20422412 156..44 565 100 Minus
2L 23513712 2L 20420489..20420590 755..654 510 100 Minus
2L 23513712 2L 20420318..20420412 849..755 475 100 Minus
2L 23513712 2L 20422144..20422236 247..155 465 100 Minus
2L 23513712 2L 20417593..20417667 923..849 375 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:41:09 has no hits.

BS08078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:57 Download gff for BS08078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10954-PA 1..906 17..922 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:51 Download gff for BS08078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10954-PA 1..906 17..922 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:11 Download gff for BS08078.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc2-RA 525..1446 9..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:24 Download gff for BS08078.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc2-RA 496..1417 9..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:24 Download gff for BS08078.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20417585..20417667 849..931 96 -> Minus
2L 20420319..20420412 755..848 100 -> Minus
2L 20420490..20420589 655..754 100 -> Minus
2L 20420648..20420834 468..654 100 -> Minus
2L 20420897..20421117 247..467 100 -> Minus
2L 20422145..20422236 155..246 100 -> Minus
2L 20422302..20422411 45..154 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:11 Download gff for BS08078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20422302..20422411 45..154 100 -> Minus
arm_2L 20417585..20417667 849..931 96 -> Minus
arm_2L 20420319..20420412 755..848 100 -> Minus
arm_2L 20420490..20420589 655..754 100 -> Minus
arm_2L 20420648..20420834 468..654 100 -> Minus
arm_2L 20420897..20421117 247..467 100 -> Minus
arm_2L 20422145..20422236 155..246 100 -> Minus

BS08078.5prime Sequence

787 bp (786 high quality bases) assembled on 2006-01-06

> BS08078.5prime
GAAGTTATCAGTCGACATGATCCTGCTGGAAATCAATAATCGGATTATCG
AGGAGACGCTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTGAAGCCT
GAATCGATAGACATACGAATAGCAGACTTCGACGGCGTCCTTTATCACAT
TTCCAATGTGAATGGCGATAAAACAAAAGTTCGGATCAGCATATCGCTGA
AGTTCTACAAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGAAGCGT
GAATATGGCAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTTTCCGT
ACTTATCAACCTGGAGGAGATTCCCGAGGACTGCGAGCAAATCGCAAAGA
GAATCGGACTGCTGAAGCGCAACTGTTTCGCATCGGTTTTTGAAAAGTAT
TTTGACTATCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTCATTAA
CTACCGCAACGATGAGACTTTATATGTGGAAGCCAAGCCTGATCGTGTCA
CCGTCGTCTTTAGTACCATTTTCCGGGACGAAGACGATGTCATTATCGGC
AAAGTATTTATGCAGGAATTGAGGGAAGGTCGGCGTGCCTCGCACACCGC
ACCACAAGTGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGCCAACA
CGGACGCTAGGGTGGGCGACAACATTGGCTATGTCACATTCGTACTCTTC
CCTCGGCATACCAACAAAGAAACAAGGGACAATACCATTAACTTAATTCA
CATGTTCCGAGATTACTTGCACTACCACATTAAGTGT

BS08078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10954-PA 906 Arc-p34-RA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc2-RB 1974 CG10954-RB 537..1308 16..787 3860 100 Plus
Arpc2-RA 1941 CG10954-RA 504..1275 16..787 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20420897..20421117 472..692 1105 100 Plus
2L 23513712 2L 20420646..20420834 283..471 945 100 Plus
2L 23513712 2L 20420489..20420590 184..285 510 100 Plus
2L 23513712 2L 20420318..20420412 90..184 475 100 Plus
2L 23513712 2L 20422144..20422236 692..784 465 100 Plus
2L 23513712 2L 20417593..20417667 16..90 375 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:31:41 has no hits.

BS08078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:58 Download gff for BS08078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10954-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:53 Download gff for BS08078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10954-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:50 Download gff for BS08078.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc2-RA 525..1304 8..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:08 Download gff for BS08078.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc2-RA 496..1275 8..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:08 Download gff for BS08078.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20417585..20417667 8..90 96 -> Plus
2L 20420319..20420412 91..184 100 -> Plus
2L 20420490..20420589 185..284 100 -> Plus
2L 20420648..20420834 285..471 100 -> Plus
2L 20420897..20421117 472..692 100 -> Plus
2L 20422145..20422238 693..787 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:50 Download gff for BS08078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20417585..20417667 8..90 96 -> Plus
arm_2L 20420319..20420412 91..184 100 -> Plus
arm_2L 20420490..20420589 185..284 100 -> Plus
arm_2L 20420648..20420834 285..471 100 -> Plus
arm_2L 20420897..20421117 472..692 100 -> Plus
arm_2L 20422145..20422238 693..787 98   Plus

BS08078.complete Sequence

938 bp (938 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636093

> BS08078.complete
GAAGTTATCAGTCGACATGATCCTGCTGGAAATCAATAATCGGATTATCG
AGGAGACGCTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTGAAGCCT
GAATCGATAGACATACGAATAGCAGACTTCGACGGCGTCCTTTATCACAT
TTCCAATGTGAATGGCGATAAAACAAAAGTTCGGATCAGCATATCGCTGA
AGTTCTACAAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGAAGCGT
GAATATGGCAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTTTCCGT
ACTTATCAACCTGGAGGAGATTCCCGAGGACTGCGAGCAAATCGCAAAGA
GAATCGGACTGCTGAAGCGCAACTGTTTCGCATCGGTTTTTGAAAAGTAT
TTTGACTATCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTCATTAA
CTACCGCAACGATGAGACTTTATATGTGGAAGCCAAGCCTGATCGTGTCA
CCGTCGTCTTTAGTACCATTTTCCGGGACGAAGACGATGTCATTATCGGC
AAAGTATTTATGCAGGAATTGAGGGAAGGTCGGCGTGCCTCGCACACCGC
ACCACAAGTGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGCCAACA
CGGACGCTAGGGTGGGCGACAACATTGGCTATGTCACATTCGTACTCTTC
CCTCGGCATACCAACAAAGAAACAAGGGACAATACCATTAACTTAATTCA
CATGTTCCGAGATTACTTGCACTACCACATTAAGTGTTCAAAGGCTTACA
TTCATTCGCGCATGCGAGCAAAAACCTCGGATTTCCTCAAGGTGCTAAAT
CGTGCAAGGCCAGAGCCCAAAAACACGGAGAAGAAAACTATAACGGGGAG
AACTTTCAAGCGCATCGATTGAAAGCTTTCTAGACCAT

BS08078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc2-RB 906 CG10954-PB 1..906 17..922 4530 100 Plus
Arpc2-RA 906 CG10954-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc2-RB 1974 CG10954-RB 537..1443 16..922 4535 100 Plus
Arpc2-RA 1941 CG10954-RA 504..1410 16..922 4535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20420897..20421117 472..692 1105 100 Plus
2L 23513712 2L 20420646..20420834 283..471 945 100 Plus
2L 23513712 2L 20422300..20422412 783..895 565 100 Plus
2L 23513712 2L 20420489..20420590 184..285 510 100 Plus
2L 23513712 2L 20420318..20420412 90..184 475 100 Plus
2L 23513712 2L 20422144..20422236 692..784 465 100 Plus
2L 23513712 2L 20417593..20417667 16..90 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:58:48 has no hits.

BS08078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:40 Download gff for BS08078.complete
Subject Subject Range Query Range Percent Splice Strand
Arc-p34-RA 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:51 Download gff for BS08078.complete
Subject Subject Range Query Range Percent Splice Strand
Arc-p34-RA 525..1446 8..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:02 Download gff for BS08078.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc2-RA 534..1438 17..921 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:40 Download gff for BS08078.complete
Subject Subject Range Query Range Percent Splice Strand
Arc-p34-RA 525..1446 8..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:34 Download gff for BS08078.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc2-RA 505..1409 17..921 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:34 Download gff for BS08078.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20417594..20417667 17..90 100 -> Plus
2L 20420319..20420412 91..184 100 -> Plus
2L 20420490..20420589 185..284 100 -> Plus
2L 20420648..20420834 285..471 100 -> Plus
2L 20420897..20421117 472..692 100 -> Plus
2L 20422145..20422236 693..784 100 -> Plus
2L 20422302..20422411 785..894 100 -> Plus
2L 20422469..20422495 895..921 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:02 Download gff for BS08078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20420490..20420589 185..284 100 -> Plus
arm_2L 20420319..20420412 91..184 100 -> Plus
arm_2L 20417594..20417667 17..90 100 -> Plus
arm_2L 20420648..20420834 285..471 100 -> Plus
arm_2L 20420897..20421117 472..692 100 -> Plus
arm_2L 20422145..20422236 693..784 100 -> Plus
arm_2L 20422302..20422411 785..894 100 -> Plus
arm_2L 20422469..20422495 895..921 100   Plus

BS08078.pep Sequence

Translation from 16 to 921

> BS08078.pep
MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNG
DKTKVRISISLKFYKQLQEHGADELLKREYGSLLTDTEEGYNVSVLINLE
EIPEDCEQIAKRIGLLKRNCFASVFEKYFDYQEQGEEGQKRAVINYRNDE
TLYVEAKPDRVTVVFSTIFRDEDDVIIGKVFMQELREGRRASHTAPQVLF
SHREPPLELANTDARVGDNIGYVTFVLFPRHTNKETRDNTINLIHMFRDY
LHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEPKNTEKKTITGRTFKRI
D*

BS08078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc2-PB 301 CG10954-PB 1..301 1..301 1554 100 Plus
Arpc2-PA 301 CG10954-PA 1..301 1..301 1554 100 Plus