Clone Sequence Records
BS08078.3prime Sequence
936 bp (793 high quality bases) assembled on 2006-01-06
> BS08078.3prime
ATGGTCTAGAAAGCTTTCAATCGATGCGCTTGAAAGTTCTCCCCGTTATA
GTTTTCTTCTCCGTGTTTTTGGGCTCTGGCCTTGCACGATTTAGCACCTT
GAGGAAATCCGAGGTTTTTGCTCGCATGCGCGAATGAATGTAAGCCTTTG
AACACTTAATGTGGTAGTGCAAGTAATCTCGGAACATGTGAATTAAGTTA
ATGGTATTGTCCCTTGTTTCTTTGTTGGTATGCCGAGGGAAGAGTACGAA
TGTGACATAGCCAATGTTGTCGCCCACCCTAGCGTCCGTGTTGGCCAATT
CCAATGGTGGTTCTCGGTGCGAAAAGAGCACTTGTGGTGCGGTGTGCGAG
GCACGCCGACCTTCCCTCAATTCCTGCATAAATACTTTGCCGATAATGAC
ATCGTCTTCGTCCCGGAAAATGGTACTAAAGACGACGGTGACACGATCAG
GCTTGGCTTCCACATATAAAGTCTCATCGTTGCGGTAGTTAATGACGGCA
CGCTTTTGGCCCTCTTCGCCCTGCTCCTGATAGTCAAAATACTTTTCAAA
AACCGATGCGAAACAGTTGCGCTTCAGCAGTCCGATTCTCTTTGCGATTT
GCTCGCAGTCCTCGGGAATCTCCTCCAGGTTGATAAGTACGGAAACATTG
TAGCCTTCTTCCGTGTCTGTAAGCAGACTGCCATATTCACGCTTCAGCAA
CTCGTCGGCTCCATGTTCTTGCAGCTGTTTGTAGAACTTCAGCGATATGC
TGATCCGAACTTTTGTTTTATCGCCATTCACATTGGAAATGTGATAAAGG
ACGCCGTCGAAGTCTGCTATTCGTATGTCTATCGATTCAGGCTTCAGTCC
AGCCTGGGCATTACGGTATTTGACCAGCAGCGTCTCCTCGATAATCCGAT
TATTGATTTCCAGCAGGATCATGTCGACTGATAACT
BS08078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10954-PA | 906 | Arc-p34-RA | 1..906 | 922..17 | 4530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 1974 | CG10954-RB | 537..1443 | 923..17 | 4535 | 100 | Minus |
Arpc2-RA | 1941 | CG10954-RA | 504..1410 | 923..17 | 4535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20420897..20421117 | 467..247 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 20420646..20420834 | 656..468 | 945 | 100 | Minus |
2L | 23513712 | 2L | 20422300..20422412 | 156..44 | 565 | 100 | Minus |
2L | 23513712 | 2L | 20420489..20420590 | 755..654 | 510 | 100 | Minus |
2L | 23513712 | 2L | 20420318..20420412 | 849..755 | 475 | 100 | Minus |
2L | 23513712 | 2L | 20422144..20422236 | 247..155 | 465 | 100 | Minus |
2L | 23513712 | 2L | 20417593..20417667 | 923..849 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:41:09 has no hits.
BS08078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:57 Download gff for
BS08078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 1..906 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:51 Download gff for
BS08078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 1..906 | 17..922 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:11 Download gff for
BS08078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 525..1446 | 9..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:24 Download gff for
BS08078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 496..1417 | 9..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:24 Download gff for
BS08078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20417585..20417667 | 849..931 | 96 | -> | Minus |
2L | 20420319..20420412 | 755..848 | 100 | -> | Minus |
2L | 20420490..20420589 | 655..754 | 100 | -> | Minus |
2L | 20420648..20420834 | 468..654 | 100 | -> | Minus |
2L | 20420897..20421117 | 247..467 | 100 | -> | Minus |
2L | 20422145..20422236 | 155..246 | 100 | -> | Minus |
2L | 20422302..20422411 | 45..154 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:11 Download gff for
BS08078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20422302..20422411 | 45..154 | 100 | -> | Minus |
arm_2L | 20417585..20417667 | 849..931 | 96 | -> | Minus |
arm_2L | 20420319..20420412 | 755..848 | 100 | -> | Minus |
arm_2L | 20420490..20420589 | 655..754 | 100 | -> | Minus |
arm_2L | 20420648..20420834 | 468..654 | 100 | -> | Minus |
arm_2L | 20420897..20421117 | 247..467 | 100 | -> | Minus |
arm_2L | 20422145..20422236 | 155..246 | 100 | -> | Minus |
BS08078.5prime Sequence
787 bp (786 high quality bases) assembled on 2006-01-06
> BS08078.5prime
GAAGTTATCAGTCGACATGATCCTGCTGGAAATCAATAATCGGATTATCG
AGGAGACGCTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTGAAGCCT
GAATCGATAGACATACGAATAGCAGACTTCGACGGCGTCCTTTATCACAT
TTCCAATGTGAATGGCGATAAAACAAAAGTTCGGATCAGCATATCGCTGA
AGTTCTACAAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGAAGCGT
GAATATGGCAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTTTCCGT
ACTTATCAACCTGGAGGAGATTCCCGAGGACTGCGAGCAAATCGCAAAGA
GAATCGGACTGCTGAAGCGCAACTGTTTCGCATCGGTTTTTGAAAAGTAT
TTTGACTATCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTCATTAA
CTACCGCAACGATGAGACTTTATATGTGGAAGCCAAGCCTGATCGTGTCA
CCGTCGTCTTTAGTACCATTTTCCGGGACGAAGACGATGTCATTATCGGC
AAAGTATTTATGCAGGAATTGAGGGAAGGTCGGCGTGCCTCGCACACCGC
ACCACAAGTGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGCCAACA
CGGACGCTAGGGTGGGCGACAACATTGGCTATGTCACATTCGTACTCTTC
CCTCGGCATACCAACAAAGAAACAAGGGACAATACCATTAACTTAATTCA
CATGTTCCGAGATTACTTGCACTACCACATTAAGTGT
BS08078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10954-PA | 906 | Arc-p34-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 1974 | CG10954-RB | 537..1308 | 16..787 | 3860 | 100 | Plus |
Arpc2-RA | 1941 | CG10954-RA | 504..1275 | 16..787 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20420897..20421117 | 472..692 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 20420646..20420834 | 283..471 | 945 | 100 | Plus |
2L | 23513712 | 2L | 20420489..20420590 | 184..285 | 510 | 100 | Plus |
2L | 23513712 | 2L | 20420318..20420412 | 90..184 | 475 | 100 | Plus |
2L | 23513712 | 2L | 20422144..20422236 | 692..784 | 465 | 100 | Plus |
2L | 23513712 | 2L | 20417593..20417667 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:31:41 has no hits.
BS08078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:58 Download gff for
BS08078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:53 Download gff for
BS08078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10954-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:41:50 Download gff for
BS08078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 525..1304 | 8..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:08 Download gff for
BS08078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 496..1275 | 8..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:08 Download gff for
BS08078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20417585..20417667 | 8..90 | 96 | -> | Plus |
2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
2L | 20422145..20422238 | 693..787 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:41:50 Download gff for
BS08078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20417585..20417667 | 8..90 | 96 | -> | Plus |
arm_2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
arm_2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
arm_2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
arm_2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
arm_2L | 20422145..20422238 | 693..787 | 98 | | Plus |
BS08078.complete Sequence
938 bp (938 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636093
> BS08078.complete
GAAGTTATCAGTCGACATGATCCTGCTGGAAATCAATAATCGGATTATCG
AGGAGACGCTGCTGGTCAAATACCGTAATGCCCAGGCTGGACTGAAGCCT
GAATCGATAGACATACGAATAGCAGACTTCGACGGCGTCCTTTATCACAT
TTCCAATGTGAATGGCGATAAAACAAAAGTTCGGATCAGCATATCGCTGA
AGTTCTACAAACAGCTGCAAGAACATGGAGCCGACGAGTTGCTGAAGCGT
GAATATGGCAGTCTGCTTACAGACACGGAAGAAGGCTACAATGTTTCCGT
ACTTATCAACCTGGAGGAGATTCCCGAGGACTGCGAGCAAATCGCAAAGA
GAATCGGACTGCTGAAGCGCAACTGTTTCGCATCGGTTTTTGAAAAGTAT
TTTGACTATCAGGAGCAGGGCGAAGAGGGCCAAAAGCGTGCCGTCATTAA
CTACCGCAACGATGAGACTTTATATGTGGAAGCCAAGCCTGATCGTGTCA
CCGTCGTCTTTAGTACCATTTTCCGGGACGAAGACGATGTCATTATCGGC
AAAGTATTTATGCAGGAATTGAGGGAAGGTCGGCGTGCCTCGCACACCGC
ACCACAAGTGCTCTTTTCGCACCGAGAACCACCATTGGAATTGGCCAACA
CGGACGCTAGGGTGGGCGACAACATTGGCTATGTCACATTCGTACTCTTC
CCTCGGCATACCAACAAAGAAACAAGGGACAATACCATTAACTTAATTCA
CATGTTCCGAGATTACTTGCACTACCACATTAAGTGTTCAAAGGCTTACA
TTCATTCGCGCATGCGAGCAAAAACCTCGGATTTCCTCAAGGTGCTAAAT
CGTGCAAGGCCAGAGCCCAAAAACACGGAGAAGAAAACTATAACGGGGAG
AACTTTCAAGCGCATCGATTGAAAGCTTTCTAGACCAT
BS08078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 906 | CG10954-PB | 1..906 | 17..922 | 4530 | 100 | Plus |
Arpc2-RA | 906 | CG10954-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-RB | 1974 | CG10954-RB | 537..1443 | 16..922 | 4535 | 100 | Plus |
Arpc2-RA | 1941 | CG10954-RA | 504..1410 | 16..922 | 4535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20420897..20421117 | 472..692 | 1105 | 100 | Plus |
2L | 23513712 | 2L | 20420646..20420834 | 283..471 | 945 | 100 | Plus |
2L | 23513712 | 2L | 20422300..20422412 | 783..895 | 565 | 100 | Plus |
2L | 23513712 | 2L | 20420489..20420590 | 184..285 | 510 | 100 | Plus |
2L | 23513712 | 2L | 20420318..20420412 | 90..184 | 475 | 100 | Plus |
2L | 23513712 | 2L | 20422144..20422236 | 692..784 | 465 | 100 | Plus |
2L | 23513712 | 2L | 20417593..20417667 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:58:48 has no hits.
BS08078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:40 Download gff for
BS08078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc-p34-RA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:51 Download gff for
BS08078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc-p34-RA | 525..1446 | 8..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:02 Download gff for
BS08078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 534..1438 | 17..921 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:40 Download gff for
BS08078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc-p34-RA | 525..1446 | 8..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:34 Download gff for
BS08078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc2-RA | 505..1409 | 17..921 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:34 Download gff for
BS08078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20417594..20417667 | 17..90 | 100 | -> | Plus |
2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
2L | 20422145..20422236 | 693..784 | 100 | -> | Plus |
2L | 20422302..20422411 | 785..894 | 100 | -> | Plus |
2L | 20422469..20422495 | 895..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:02 Download gff for
BS08078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20420490..20420589 | 185..284 | 100 | -> | Plus |
arm_2L | 20420319..20420412 | 91..184 | 100 | -> | Plus |
arm_2L | 20417594..20417667 | 17..90 | 100 | -> | Plus |
arm_2L | 20420648..20420834 | 285..471 | 100 | -> | Plus |
arm_2L | 20420897..20421117 | 472..692 | 100 | -> | Plus |
arm_2L | 20422145..20422236 | 693..784 | 100 | -> | Plus |
arm_2L | 20422302..20422411 | 785..894 | 100 | -> | Plus |
arm_2L | 20422469..20422495 | 895..921 | 100 | | Plus |
BS08078.pep Sequence
Translation from 16 to 921
> BS08078.pep
MILLEINNRIIEETLLVKYRNAQAGLKPESIDIRIADFDGVLYHISNVNG
DKTKVRISISLKFYKQLQEHGADELLKREYGSLLTDTEEGYNVSVLINLE
EIPEDCEQIAKRIGLLKRNCFASVFEKYFDYQEQGEEGQKRAVINYRNDE
TLYVEAKPDRVTVVFSTIFRDEDDVIIGKVFMQELREGRRASHTAPQVLF
SHREPPLELANTDARVGDNIGYVTFVLFPRHTNKETRDNTINLIHMFRDY
LHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEPKNTEKKTITGRTFKRI
D*
BS08078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc2-PB | 301 | CG10954-PB | 1..301 | 1..301 | 1554 | 100 | Plus |
Arpc2-PA | 301 | CG10954-PA | 1..301 | 1..301 | 1554 | 100 | Plus |