Clone Sequence Records
BS08079.3prime Sequence
857 bp (757 high quality bases) assembled on 2006-01-06
> BS08079.3prime
ATGGTCTAGAAAGCTTTTATGTGTCGGATTCATTGGAATCATCACTACCG
GGCGGTATGGTCGGTGTCTCATAATCGTAATAGACCGGATAACGCGGCTT
AAAGGGCTCACTTGTGGTAACATCAGCCTGAGCGGACAAAATGCTGCTCA
TGCTAACGTTGGTCAAGAACTCAGTGTCATCGCTGAACTTCTCACTTAGA
GCCATGGCGTCTTCATATGATGGCGGCATCATGGGTATATAGTCCGGCGG
ATTATCGCTATCACTGGTCACCAAAATCGCTGGCATGGCCGTTGGCCTGA
GGGCGGCAGTTGTTGGCGTTGATGAGGGCGTGGAGCTTGTGGGCGTGGGA
CTGACATTCGTTATCATATTCATATTGCTATTGGTCGGCAGTAGTCCGCC
CACAAGGCGTCCATGATTGTTGTTGTTGTTGTTGATGCTGCTGATACGTC
GCTGCTGAACTGAGGCACTTATCCGGTCCCGATCTCGATCTCGATCTCTT
TCGCGATCCACATTCATATCACGATCACGATCCCGATCCCTTTGACGCTG
CTGCGTCGACATTTGTAAATTTTGACTAACTACTTGGTGCTGTTGCTGCT
GGCGATTGAAACGCAACAGGGCCTCCGGACCATCCATGATCGGTATACTG
CCGATGGTCAGCGGAATCTTCAGCTTAAGTTTCCAGTGAAACTCCGTGGG
GTTCACGATGATCTTAATCGAATAGTTAACGCTAATGGGGCACGTGGGCT
TCACCGAAGTGGGCGGTATCGACGGCAGGTCGAGATACCCACGGTACACC
TTTCTCGACCATCTCAGCACGTTTCCGAACTGCTTCCGCGCAATCAGGTG
CTTGTCG
BS08079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-PA | 1536 | CG2993-RA | 696..1536 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RA | 2961 | CG2993-RA | 1557..2398 | 857..16 | 4210 | 100 | Minus |
CG2993-RC | 3339 | CG2993-RC | 1557..2365 | 857..49 | 4045 | 100 | Minus |
CG2993-RB | 3276 | CG2993-RB | 1557..2302 | 857..112 | 3730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7806912..7807540 | 229..857 | 3145 | 100 | Plus |
3R | 32079331 | 3R | 7806558..7806770 | 16..228 | 1065 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8264..8331 | 476..408 | 108 | 63.8 | Minus |
BS08079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:59 Download gff for
BS08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 696..1536 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:54 Download gff for
BS08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 696..1536 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:16 Download gff for
BS08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 1557..2398 | 16..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:42 Download gff for
BS08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 1557..2398 | 16..857 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:42 Download gff for
BS08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7806558..7806770 | 16..228 | 100 | <- | Plus |
3R | 7806912..7807540 | 229..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:16 Download gff for
BS08079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3632280..3632492 | 16..228 | 100 | <- | Plus |
arm_3R | 3632634..3633262 | 229..857 | 100 | | Plus |
BS08079.5prime Sequence
942 bp (775 high quality bases) assembled on 2006-01-06
> BS08079.5prime
GAAGTTATCAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGAG
GATTCCGCTGAACATCGGCAGTATACCGATCATGGATGGTCC
BS08079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-PA | 1536 | CG2993-RA | 1..926 | 17..942 | 4580 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RC | 3339 | CG2993-RC | 862..1787 | 17..942 | 4600 | 99.8 | Plus |
CG2993-RB | 3276 | CG2993-RB | 862..1787 | 17..942 | 4600 | 99.8 | Plus |
CG2993-RA | 2961 | CG2993-RA | 862..1787 | 17..942 | 4600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7807310..7807768 | 942..484 | 2265 | 99.6 | Minus |
3R | 32079331 | 3R | 7807972..7808328 | 486..130 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 7809038..7809153 | 132..17 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:11:17 has no hits.
BS08079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:01 Download gff for
BS08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:56 Download gff for
BS08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:12 Download gff for
BS08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 856..1787 | 9..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:33 Download gff for
BS08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 856..1787 | 9..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:33 Download gff for
BS08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7809039..7809159 | 9..131 | 96 | | Minus |
3R | 7807310..7807767 | 485..942 | 99 | <- | Minus |
3R | 7807974..7808326 | 132..484 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:12 Download gff for
BS08079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3633032..3633489 | 485..942 | 99 | <- | Minus |
arm_3R | 3633696..3634048 | 132..484 | 100 | <- | Minus |
arm_3R | 3634761..3634881 | 9..131 | 96 | | Minus |
BS08079.complete Sequence
1568 bp (1568 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636094
> BS08079.complete
GAAGTTATCAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGAA
GATTCCGCTGACCATCGGCAGTATACCGATCATGGATGGTCCGGAGGCCC
TGTTGCGTTTCAATCGCCAGCAGCAACAGCACCAAGTAGTTAGTCAAAAT
TTACAAATGTCGACGCAGCAGCGTCAAAGGGATCGGGATCGTGATCGTGA
TATGAATGTGGATCGCGAAAGAGATCGAGATCGAGATCGGGACCGGATAA
GTGCCTCAGTTCAGCAGCGACGTATCAGCAGCATCAACAACAACAACAAC
AATCATGGACGCCTTGTGGGCGGACTACTGCCGACCAATAGCAATATGAA
TATGATAACGAATGTCAGTCCCACGCCCACAAGCTCCACGCCCTCATCAA
CGCCAACAACTGCCGCCCTCAGGCCAACGGCCATGCCAGCGATTTTGGTG
ACCAGTGATAGCGATAATCCGCCGGACTATATACCCATGATGCCGCCATC
ATATGAAGACGCCATGGCTCTAAGTGAGAAGTTCAGCGATGACACTGAGT
TCTTGACCAACGTTAGCATGAGCAGCATTTTGTCCGCTCAGGCTGATGTT
ACCACAAGTGAGCCCTTTAAGCCGCGTTATCCGGTCTATTACGATTATGA
GACACCGACCATACCGCCCGGTAGTGATGATTCCAATGAATCCGACACAT
AAAAGCTTTCTAGACCAT
BS08079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RA | 1536 | CG2993-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
CG2993-RC | 1638 | CG2993-PC | 1..1504 | 17..1520 | 7520 | 100 | Plus |
CG2993-RB | 1575 | CG2993-PB | 1..1441 | 17..1457 | 7205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-RA | 2961 | CG2993-RA | 862..2398 | 17..1553 | 7685 | 100 | Plus |
CG2993-RC | 3339 | CG2993-RC | 862..2365 | 17..1520 | 7520 | 100 | Plus |
CG2993-RB | 3276 | CG2993-RB | 862..2302 | 17..1457 | 7205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7806912..7807768 | 1340..484 | 4285 | 100 | Minus |
3R | 32079331 | 3R | 7807972..7808328 | 486..130 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 7806558..7806770 | 1553..1341 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 7809038..7809153 | 132..17 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:48 has no hits.
BS08079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:23 Download gff for
BS08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 1..1536 | 17..1552 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:32 Download gff for
BS08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 830..2372 | 9..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:51 Download gff for
BS08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 862..2395 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:23 Download gff for
BS08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 830..2372 | 9..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:42 Download gff for
BS08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2993-RA | 862..2395 | 17..1550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:42 Download gff for
BS08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7806561..7806770 | 1341..1550 | 100 | <- | Minus |
3R | 7806912..7807767 | 485..1340 | 100 | <- | Minus |
3R | 7807974..7808326 | 132..484 | 100 | <- | Minus |
3R | 7809039..7809153 | 17..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:51 Download gff for
BS08079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3632283..3632492 | 1341..1550 | 100 | <- | Minus |
arm_3R | 3632634..3633489 | 485..1340 | 100 | <- | Minus |
arm_3R | 3633696..3634048 | 132..484 | 100 | <- | Minus |
arm_3R | 3634761..3634875 | 17..131 | 100 | | Minus |
BS08079.pep Sequence
Translation from 16 to 1551
> BS08079.pep
MPIECLISFDNNPQGVYYAGQELSGVVDLSVDATKRIKGIHVTVSGYAKI
RWIKKGYPRDSERAMCRAYRSYLSSRSYVLGSCANNSSIDWPAGEYSYTF
HVILPDNLPTSFDGKYGQIHYEIITTIERAARHPKVFKLPFTVIQPLDLN
ADAIYRVPLEILDRKRFWSFCCPTGPLTVKFSTPYCGYAPGQKIHFVLYI
NNESSIDIIECEVKLKQEVSYESHDPQHEYRYDKHLIARKQFGNVLRWSR
KVYRGYLDLPSIPPTSVKPTCPISVNYSIKIIVNPTEFHWKLKLKIPLTI
GSIPIMDGPEALLRFNRQQQQHQVVSQNLQMSTQQRQRDRDRDRDMNVDR
ERDRDRDRDRISASVQQRRISSINNNNNNHGRLVGGLLPTNSNMNMITNV
SPTPTSSTPSSTPTTAALRPTAMPAILVTSDSDNPPDYIPMMPPSYEDAM
ALSEKFSDDTEFLTNVSMSSILSAQADVTTSEPFKPRYPVYYDYETPTIP
PGSDDSNESDT*
BS08079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2993-PA | 511 | CG2993-PA | 1..511 | 1..511 | 2711 | 100 | Plus |
CG2993-PC | 545 | CG2993-PC | 1..501 | 1..501 | 2659 | 100 | Plus |
CG2993-PB | 524 | CG2993-PB | 1..480 | 1..480 | 2535 | 100 | Plus |
CG14696-PA | 457 | CG14696-PA | 9..317 | 9..306 | 475 | 33.5 | Plus |
CG1105-PA | 422 | CG1105-PA | 6..310 | 5..305 | 439 | 30 | Plus |