Clone BS08079 Report

Search the DGRC for BS08079

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG2993-RA
Protein status:BS08079.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08079.3prime Sequence

857 bp (757 high quality bases) assembled on 2006-01-06

> BS08079.3prime
ATGGTCTAGAAAGCTTTTATGTGTCGGATTCATTGGAATCATCACTACCG
GGCGGTATGGTCGGTGTCTCATAATCGTAATAGACCGGATAACGCGGCTT
AAAGGGCTCACTTGTGGTAACATCAGCCTGAGCGGACAAAATGCTGCTCA
TGCTAACGTTGGTCAAGAACTCAGTGTCATCGCTGAACTTCTCACTTAGA
GCCATGGCGTCTTCATATGATGGCGGCATCATGGGTATATAGTCCGGCGG
ATTATCGCTATCACTGGTCACCAAAATCGCTGGCATGGCCGTTGGCCTGA
GGGCGGCAGTTGTTGGCGTTGATGAGGGCGTGGAGCTTGTGGGCGTGGGA
CTGACATTCGTTATCATATTCATATTGCTATTGGTCGGCAGTAGTCCGCC
CACAAGGCGTCCATGATTGTTGTTGTTGTTGTTGATGCTGCTGATACGTC
GCTGCTGAACTGAGGCACTTATCCGGTCCCGATCTCGATCTCGATCTCTT
TCGCGATCCACATTCATATCACGATCACGATCCCGATCCCTTTGACGCTG
CTGCGTCGACATTTGTAAATTTTGACTAACTACTTGGTGCTGTTGCTGCT
GGCGATTGAAACGCAACAGGGCCTCCGGACCATCCATGATCGGTATACTG
CCGATGGTCAGCGGAATCTTCAGCTTAAGTTTCCAGTGAAACTCCGTGGG
GTTCACGATGATCTTAATCGAATAGTTAACGCTAATGGGGCACGTGGGCT
TCACCGAAGTGGGCGGTATCGACGGCAGGTCGAGATACCCACGGTACACC
TTTCTCGACCATCTCAGCACGTTTCCGAACTGCTTCCGCGCAATCAGGTG
CTTGTCG

BS08079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-PA 1536 CG2993-RA 696..1536 857..17 4205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RA 2961 CG2993-RA 1557..2398 857..16 4210 100 Minus
CG2993-RC 3339 CG2993-RC 1557..2365 857..49 4045 100 Minus
CG2993-RB 3276 CG2993-RB 1557..2302 857..112 3730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7806912..7807540 229..857 3145 100 Plus
3R 32079331 3R 7806558..7806770 16..228 1065 100 Plus
Blast to na_te.dros performed 2015-02-10 23:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8264..8331 476..408 108 63.8 Minus

BS08079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:32:59 Download gff for BS08079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 696..1536 17..857 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:54 Download gff for BS08079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 696..1536 17..857 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:33:16 Download gff for BS08079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 1557..2398 16..857 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:42 Download gff for BS08079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 1557..2398 16..857 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:42 Download gff for BS08079.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7806558..7806770 16..228 100 <- Plus
3R 7806912..7807540 229..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:33:16 Download gff for BS08079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3632280..3632492 16..228 100 <- Plus
arm_3R 3632634..3633262 229..857 100   Plus

BS08079.5prime Sequence

942 bp (775 high quality bases) assembled on 2006-01-06

> BS08079.5prime
GAAGTTATCAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGAG
GATTCCGCTGAACATCGGCAGTATACCGATCATGGATGGTCC

BS08079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-PA 1536 CG2993-RA 1..926 17..942 4580 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RC 3339 CG2993-RC 862..1787 17..942 4600 99.8 Plus
CG2993-RB 3276 CG2993-RB 862..1787 17..942 4600 99.8 Plus
CG2993-RA 2961 CG2993-RA 862..1787 17..942 4600 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7807310..7807768 942..484 2265 99.6 Minus
3R 32079331 3R 7807972..7808328 486..130 1785 100 Minus
3R 32079331 3R 7809038..7809153 132..17 580 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:11:17 has no hits.

BS08079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:01 Download gff for BS08079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:29:56 Download gff for BS08079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-PA 1..926 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:12 Download gff for BS08079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 856..1787 9..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:33 Download gff for BS08079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 856..1787 9..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:33 Download gff for BS08079.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7809039..7809159 9..131 96   Minus
3R 7807310..7807767 485..942 99 <- Minus
3R 7807974..7808326 132..484 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:12 Download gff for BS08079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3633032..3633489 485..942 99 <- Minus
arm_3R 3633696..3634048 132..484 100 <- Minus
arm_3R 3634761..3634881 9..131 96   Minus

BS08079.complete Sequence

1568 bp (1568 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636094

> BS08079.complete
GAAGTTATCAGTCGACATGCCCATTGAGTGCCTTATATCATTTGATAATA
ATCCACAAGGTGTCTACTATGCCGGACAGGAGCTATCCGGCGTTGTTGAT
CTCAGCGTCGACGCCACGAAGCGCATTAAAGGCATCCACGTCACCGTCAG
CGGCTATGCCAAGATACGCTGGATAAAAAAGGGATATCCGCGCGACAGCG
AGCGCGCCATGTGCCGTGCCTACCGATCGTATCTGTCCTCGCGGTCCTAC
GTCCTCGGATCCTGCGCGAACAACTCGAGCATCGACTGGCCGGCCGGCGA
GTACTCGTACACCTTCCACGTGATTCTGCCCGACAATCTGCCTACGTCCT
TCGACGGCAAGTATGGCCAGATCCACTACGAGATCATAACAACGATCGAA
AGGGCCGCTCGCCACCCGAAGGTCTTTAAGCTGCCATTTACCGTAATACA
ACCGCTGGACCTGAACGCAGATGCAATTTACAGGGTTCCTCTGGAGATCC
TCGATCGGAAACGGTTCTGGAGCTTCTGCTGCCCCACAGGCCCGCTGACG
GTGAAGTTCTCGACGCCTTACTGCGGATATGCGCCCGGCCAGAAGATCCA
CTTCGTGCTGTACATCAACAACGAGTCCTCGATCGACATAATCGAATGCG
AGGTCAAGCTGAAGCAGGAGGTGAGCTACGAGTCGCACGATCCGCAGCAT
GAGTACCGCTACGACAAGCACCTGATTGCGCGGAAGCAGTTCGGAAACGT
GCTGAGATGGTCGAGAAAGGTGTACCGTGGGTATCTCGACCTGCCGTCGA
TACCGCCCACTTCGGTGAAGCCCACGTGCCCCATTAGCGTTAACTATTCG
ATTAAGATCATCGTGAACCCCACGGAGTTTCACTGGAAACTTAAGCTGAA
GATTCCGCTGACCATCGGCAGTATACCGATCATGGATGGTCCGGAGGCCC
TGTTGCGTTTCAATCGCCAGCAGCAACAGCACCAAGTAGTTAGTCAAAAT
TTACAAATGTCGACGCAGCAGCGTCAAAGGGATCGGGATCGTGATCGTGA
TATGAATGTGGATCGCGAAAGAGATCGAGATCGAGATCGGGACCGGATAA
GTGCCTCAGTTCAGCAGCGACGTATCAGCAGCATCAACAACAACAACAAC
AATCATGGACGCCTTGTGGGCGGACTACTGCCGACCAATAGCAATATGAA
TATGATAACGAATGTCAGTCCCACGCCCACAAGCTCCACGCCCTCATCAA
CGCCAACAACTGCCGCCCTCAGGCCAACGGCCATGCCAGCGATTTTGGTG
ACCAGTGATAGCGATAATCCGCCGGACTATATACCCATGATGCCGCCATC
ATATGAAGACGCCATGGCTCTAAGTGAGAAGTTCAGCGATGACACTGAGT
TCTTGACCAACGTTAGCATGAGCAGCATTTTGTCCGCTCAGGCTGATGTT
ACCACAAGTGAGCCCTTTAAGCCGCGTTATCCGGTCTATTACGATTATGA
GACACCGACCATACCGCCCGGTAGTGATGATTCCAATGAATCCGACACAT
AAAAGCTTTCTAGACCAT

BS08079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RA 1536 CG2993-PA 1..1536 17..1552 7680 100 Plus
CG2993-RC 1638 CG2993-PC 1..1504 17..1520 7520 100 Plus
CG2993-RB 1575 CG2993-PB 1..1441 17..1457 7205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-RA 2961 CG2993-RA 862..2398 17..1553 7685 100 Plus
CG2993-RC 3339 CG2993-RC 862..2365 17..1520 7520 100 Plus
CG2993-RB 3276 CG2993-RB 862..2302 17..1457 7205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7806912..7807768 1340..484 4285 100 Minus
3R 32079331 3R 7807972..7808328 486..130 1785 100 Minus
3R 32079331 3R 7806558..7806770 1553..1341 1065 100 Minus
3R 32079331 3R 7809038..7809153 132..17 580 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:16:48 has no hits.

BS08079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:23 Download gff for BS08079.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 1..1536 17..1552 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:32 Download gff for BS08079.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 830..2372 9..1553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:51 Download gff for BS08079.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 862..2395 17..1550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:23 Download gff for BS08079.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 830..2372 9..1553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:42 Download gff for BS08079.complete
Subject Subject Range Query Range Percent Splice Strand
CG2993-RA 862..2395 17..1550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:42 Download gff for BS08079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7806561..7806770 1341..1550 100 <- Minus
3R 7806912..7807767 485..1340 100 <- Minus
3R 7807974..7808326 132..484 100 <- Minus
3R 7809039..7809153 17..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:51 Download gff for BS08079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3632283..3632492 1341..1550 100 <- Minus
arm_3R 3632634..3633489 485..1340 100 <- Minus
arm_3R 3633696..3634048 132..484 100 <- Minus
arm_3R 3634761..3634875 17..131 100   Minus

BS08079.pep Sequence

Translation from 16 to 1551

> BS08079.pep
MPIECLISFDNNPQGVYYAGQELSGVVDLSVDATKRIKGIHVTVSGYAKI
RWIKKGYPRDSERAMCRAYRSYLSSRSYVLGSCANNSSIDWPAGEYSYTF
HVILPDNLPTSFDGKYGQIHYEIITTIERAARHPKVFKLPFTVIQPLDLN
ADAIYRVPLEILDRKRFWSFCCPTGPLTVKFSTPYCGYAPGQKIHFVLYI
NNESSIDIIECEVKLKQEVSYESHDPQHEYRYDKHLIARKQFGNVLRWSR
KVYRGYLDLPSIPPTSVKPTCPISVNYSIKIIVNPTEFHWKLKLKIPLTI
GSIPIMDGPEALLRFNRQQQQHQVVSQNLQMSTQQRQRDRDRDRDMNVDR
ERDRDRDRDRISASVQQRRISSINNNNNNHGRLVGGLLPTNSNMNMITNV
SPTPTSSTPSSTPTTAALRPTAMPAILVTSDSDNPPDYIPMMPPSYEDAM
ALSEKFSDDTEFLTNVSMSSILSAQADVTTSEPFKPRYPVYYDYETPTIP
PGSDDSNESDT*

BS08079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2993-PA 511 CG2993-PA 1..511 1..511 2711 100 Plus
CG2993-PC 545 CG2993-PC 1..501 1..501 2659 100 Plus
CG2993-PB 524 CG2993-PB 1..480 1..480 2535 100 Plus
CG14696-PA 457 CG14696-PA 9..317 9..306 475 33.5 Plus
CG1105-PA 422 CG1105-PA 6..310 5..305 439 30 Plus