Clone BS08083 Report

Search the DGRC for BS08083

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCortactin-RA
Protein status:BS08083.pep: full length peptide match
Sequenced Size:1712

Clone Sequence Records

BS08083.3prime Sequence

938 bp (780 high quality bases) assembled on 2006-01-06

> BS08083.3prime
ATGGTCTCGAAAGCTTTTATGAGTTCTGTCCCACCACCTGCACGTAGTTG
GCTGGAAAGAGTCCGTAGCGGTTCTTGCACAATCCCCTCCACCACCCATC
GTCGATCTTCTCGATGTGGGTGATCACGTCATCTGGATCAAAGGATATCT
CGTCGTCATCCGCCGCCTGGTAGTCGTACAGGGCAATGGCGTGGATTCCG
GTGTCCTCCAGATAGTCGGCCAAATTGTCTGAGTTCGCGTAGATTGCCTC
CTCGGGAACGGTTGCGGTGCCACTCGGAGCAACAGCCTCTGAAACGGTTC
CATTCGTTGGTGGCAAGGGCGAGGCAGCCTTAATCTCGGCCTGGTTCTGG
TACAGTGGCTCTTCTTCAACTACTGGCTCAGGATCGGCTTGAGGTTGCGG
CTCAGGTTGGACTTGGACTTGGGCGTGGACTTCGGGTTGAGGCGTCGGCA
CATACACTGGTGATTGCGGCTCACTTCTGGGAGGCGTGTCCACGGTCTCA
ACCTCAATTTGGGGCACCACATCTGGTGGTGGAGCTGCAGCCTTGGCCAC
TGGAGCTGTTTCCGGCTCTCGAGCGGGGACCACTGTCGGAGTAGGAGCAA
CCGCAGCTGATGTTGTACTTGCCGTTGGCTCCTCCTTTGCTTCTAATTCT
ATTTTAACAGGCTGCGCCTTGGGAATGATAATGGGTTCCTTTCGTGCTGG
AGGGGTTTCAGAAACAGGCGACTGCATCTGGTTAAATGCACTGATAGCAT
TGCCAATGCCACCGGTCCGACCTGTCTGGATGGCCGCCCTGCTGCCCTTT
GGAGGCGGTGCTTCCGTCGAGGTACGAGGAGTGTTCTCGGCCACAGTCTT
CTTGGCGGCTTCCTCCCGATCCCGCTTGTCTTTGGCCTCACGGAGACGTT
TCTGTTCCTCGGCCCGCTTACGTGACTCCTCCTCGGAG

BS08083.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3637-PA 1680 Cortactin-RA 759..1680 938..17 4585 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 2388 CG3637-RD 921..1848 938..11 4625 99.9 Minus
Cortactin-RC 2391 CG3637-RC 924..1851 938..11 4625 99.9 Minus
Cortactin-RB 2419 CG3637-RB 952..1879 938..11 4625 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21062220..21063147 11..938 4625 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 18:47:14 has no hits.

BS08083.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:06 Download gff for BS08083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 759..1680 17..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:02 Download gff for BS08083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 759..1680 17..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:56 Download gff for BS08083.3prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 952..1879 11..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:27 Download gff for BS08083.3prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 952..1879 11..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:27 Download gff for BS08083.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21062220..21063147 11..938 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:56 Download gff for BS08083.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16887942..16888869 11..938 99   Plus

BS08083.5prime Sequence

832 bp (825 high quality bases) assembled on 2006-01-06

> BS08083.5prime
GAAGTTATCAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGG
CCACCAGTGCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGAC
TTCGTGAACGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGAT
CGACGGCAGCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCG
AGGAGACGGAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGAT
CAGAACGCAGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCG
CATGGACAAGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGC
ACGCCTCGCAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTG
CAAGAGGATCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAA
GGTCGAGAAGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCA
AATTTGGAGTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGAT
CACATCGAGAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGG
CTTTGGCGGCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGG
TGGGATGGGACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGAC
CACAAGGTCAAGCCAGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTGC
CAAGTTCGAGAATCTGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGG
CCGAGGAACAGAAACGTCTCCGTGAGGCCNAG

BS08083.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3637-PA 1680 Cortactin-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 2388 CG3637-RD 163..975 17..829 4065 100 Plus
Cortactin-RC 2391 CG3637-RC 166..978 17..829 4065 100 Plus
Cortactin-RB 2419 CG3637-RB 194..1006 17..829 4065 100 Plus
Cortactin-RD 2388 CG3637-RD 418..700 383..665 305 74.3 Plus
Cortactin-RD 2388 CG3637-RD 529..811 272..554 305 74.3 Plus
Cortactin-RC 2391 CG3637-RC 421..703 383..665 305 74.3 Plus
Cortactin-RC 2391 CG3637-RC 532..814 272..554 305 74.3 Plus
Cortactin-RD 2388 CG3637-RD 484..588 560..664 195 79 Plus
Cortactin-RD 2388 CG3637-RD 706..810 338..442 195 79 Plus
Cortactin-RC 2391 CG3637-RC 487..591 560..664 195 79 Plus
Cortactin-RC 2391 CG3637-RC 709..813 338..442 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21063426..21063829 587..184 2020 100 Minus
3R 32079331 3R 21063093..21063335 829..587 1215 100 Minus
3R 32079331 3R 21063898..21064064 183..17 835 100 Minus
3R 32079331 3R 21063459..21063741 665..383 305 73.9 Minus
3R 32079331 3R 21063426..21063630 476..272 215 73.7 Minus
3R 32079331 3R 21063571..21063675 664..560 195 79 Minus
Blast to na_te.dros performed 2015-02-12 12:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5609..5663 70..124 122 69.1 Plus

BS08083.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:07 Download gff for BS08083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:03 Download gff for BS08083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3637-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:30:57 Download gff for BS08083.5prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 192..1009 14..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:32 Download gff for BS08083.5prime
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 192..1009 14..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:32 Download gff for BS08083.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21063090..21063334 588..832 99 <- Minus
3R 21063426..21063829 184..587 100 <- Minus
3R 21063898..21064066 14..183 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:30:57 Download gff for BS08083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16888812..16889056 588..832 99 <- Minus
arm_3R 16889148..16889551 184..587 100 <- Minus
arm_3R 16889620..16889788 14..183 99   Minus

BS08083.complete Sequence

1712 bp assembled on 2009-02-12

GenBank Submission: MN238597

> BS08083.complete
GAAGTTATCAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGG
CCACCAGTGCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGAC
TTCGTGAACGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGAT
CGACGGCAGCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCG
AGGAGACGGAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGAT
CAGAACGCAGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCG
CATGGACAAGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGC
ACGCCTCGCAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTG
CAAGAGGATCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAA
GGTCGAGAAGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCA
AATTTGGAGTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGAT
CACATCGAGAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGG
CTTTGGCGGCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGG
TGGGATGGGACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGAC
CACAAGGTCAAGCCAGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTGC
CAAGTTCGAGAATCTGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGG
CCGAGGAACAGAAACGTCTCCGTGAGGCCAAAGACAAGCGGGATCGGGAG
GAAGCCGCCAAGAAGACTGTGGCCGAGAACACTCCTCGTACCTCGACGGA
AGCACCGCCTCCAAAGGGCAGCAGGGCGGCCATCCAGACAGGTCGGACCG
GTGGCATTGGCAATGCTATCAGTGCATTTAACCAGATGCAGTCGCCTGTT
TCTGAAACCCCTCCAGCACGAAAGGAACCCATTATCATTCCCAAGGCGCA
GCCTGTTAAAATAGAATTAGAAGCAAAGGAGGAGCCAACGGCAAGTACAA
CATCAGCTGCGGTTGCTCCTACTCCGACAGTGGTCCCCGCTCGAGAGCCG
GAAACAGCTCCAGTGGCCAAGGCTGCAGCTCCACCACCAGATGTGGTGCC
CCAAATTGAGGTTGAGACCGTGGACACGCCTCCCAGAAGTGAGCCGCAAT
CACCAGTGTATGTGCCGACGCCTCAACCCGAAGTCCACGCCCAAGTCCAA
GTCCAACCTGAGCCGCAACCTCAAGCCGATCCTGAGCCAGTAGTTGAAGA
AGAGCCACTGTACCAGAACCAGGCCGAGATTAAGGCTGCCTCGCCCTTGC
CACCAACGAATGGAACCGTTTCAGAGGCTGTTGCTCCGAGTGGCACCGCA
ACCGTTCCCGAGGAGGCAATCTACGCGAACTCAGACAATTTGGCCGACTA
TCTGGAGGACACCGGAATCCACGCCATTGCCCTGTACGACTACCAGGCGG
CGGATGACGACGAGATATCCTTTGATCCAGATGACGTGATCACCCACATC
GAGAAGATCGACGATGGGTGGTGGAGGGGATTGTGCAAGAACCGCTACGG
ACTCTTTCCAGCCAACTACGTGCAGGTGGTGGGACAGAACTCATAAAAGC
TTTCGAGACCAT

BS08083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 1680 CG3637-PD 1..1680 17..1696 8385 99.9 Plus
Cortactin-RC 1680 CG3637-PC 1..1680 17..1696 8385 99.9 Plus
Cortactin-RB 1680 CG3637-PB 1..1680 17..1696 8385 99.9 Plus
Cortactin-RD 1680 CG3637-PD 256..538 383..665 305 73.9 Plus
Cortactin-RD 1680 CG3637-PD 367..649 272..554 305 73.9 Plus
Cortactin-RC 1680 CG3637-PC 256..538 383..665 305 73.9 Plus
Cortactin-RC 1680 CG3637-PC 367..649 272..554 305 73.9 Plus
Cortactin-RD 1680 CG3637-PD 322..426 560..664 195 79 Plus
Cortactin-RD 1680 CG3637-PD 544..648 338..442 195 79 Plus
Cortactin-RC 1680 CG3637-PC 322..426 560..664 195 79 Plus
Cortactin-RC 1680 CG3637-PC 544..648 338..442 195 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-RD 2388 CG3637-RD 163..1848 17..1702 8415 99.9 Plus
Cortactin-RC 2391 CG3637-RC 166..1851 17..1702 8415 99.9 Plus
Cortactin-RB 2419 CG3637-RB 194..1879 17..1702 8415 99.9 Plus
Cortactin-RD 2388 CG3637-RD 418..700 383..665 305 73.9 Plus
Cortactin-RD 2388 CG3637-RD 529..811 272..554 305 73.9 Plus
Cortactin-RC 2391 CG3637-RC 421..703 383..665 305 73.9 Plus
Cortactin-RC 2391 CG3637-RC 532..814 272..554 305 73.9 Plus
Cortactin-RD 2388 CG3637-RD 484..588 560..664 195 79 Plus
Cortactin-RD 2388 CG3637-RD 706..810 338..442 195 79 Plus
Cortactin-RC 2391 CG3637-RC 487..591 560..664 195 79 Plus
Cortactin-RC 2391 CG3637-RC 709..813 338..442 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21062220..21063335 1702..587 5565 99.9 Minus
3R 32079331 3R 21063426..21063829 587..184 2020 100 Minus
3R 32079331 3R 21063898..21064064 183..17 835 100 Minus
3R 32079331 3R 21063459..21063741 665..383 305 73.9 Minus
3R 32079331 3R 21063426..21063630 476..272 215 73.7 Minus
3R 32079331 3R 21063571..21063675 664..560 195 79 Minus
Blast to na_te.dros performed 2014-11-28 00:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5609..5663 70..124 122 69.1 Plus

BS08083.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:44 Download gff for BS08083.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RA 214..1891 17..1694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:22 Download gff for BS08083.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 194..1871 17..1694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:01 Download gff for BS08083.complete
Subject Subject Range Query Range Percent Splice Strand
Cortactin-RB 194..1871 17..1694 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:01 Download gff for BS08083.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21062228..21063334 588..1694 99 <- Minus
3R 21063426..21063829 184..587 100 <- Minus
3R 21063898..21064064 17..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:22 Download gff for BS08083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16887950..16889056 588..1694 99 <- Minus
arm_3R 16889148..16889551 184..587 100 <- Minus
arm_3R 16889620..16889786 17..183 100   Minus

BS08083.pep Sequence

Translation from 16 to 1695

> BS08083.pep
MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGR
TAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSA
VGHDYQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHA
SQKDYATGFGGKFGVQSDRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKF
GVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAKPSNLRAKFENL
AKNSEEESRKRAEEQKRLREAKDKRDREEAAKKTVAENTPRTSTEAPPPK
GSRAAIQTGRTGGIGNAISAFNQMQSPVSETPPARKEPIIIPKAQPVKIE
LEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPDVVPQIEVE
TVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQ
NQAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTG
IHAIALYDYQAADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPAN
YVQVVGQNS*

BS08083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cortactin-PD 559 CG3637-PD 1..559 1..559 2942 100 Plus
Cortactin-PC 559 CG3637-PC 1..559 1..559 2942 100 Plus
Cortactin-PB 559 CG3637-PB 1..559 1..559 2942 100 Plus
Cortactin-PA 559 CG3637-PA 1..559 1..559 2942 100 Plus
Abp1-PA 531 CG10083-PA 184..530 248..555 293 29.1 Plus