Clone Sequence Records
BS08083.3prime Sequence
938 bp (780 high quality bases) assembled on 2006-01-06
> BS08083.3prime
ATGGTCTCGAAAGCTTTTATGAGTTCTGTCCCACCACCTGCACGTAGTTG
GCTGGAAAGAGTCCGTAGCGGTTCTTGCACAATCCCCTCCACCACCCATC
GTCGATCTTCTCGATGTGGGTGATCACGTCATCTGGATCAAAGGATATCT
CGTCGTCATCCGCCGCCTGGTAGTCGTACAGGGCAATGGCGTGGATTCCG
GTGTCCTCCAGATAGTCGGCCAAATTGTCTGAGTTCGCGTAGATTGCCTC
CTCGGGAACGGTTGCGGTGCCACTCGGAGCAACAGCCTCTGAAACGGTTC
CATTCGTTGGTGGCAAGGGCGAGGCAGCCTTAATCTCGGCCTGGTTCTGG
TACAGTGGCTCTTCTTCAACTACTGGCTCAGGATCGGCTTGAGGTTGCGG
CTCAGGTTGGACTTGGACTTGGGCGTGGACTTCGGGTTGAGGCGTCGGCA
CATACACTGGTGATTGCGGCTCACTTCTGGGAGGCGTGTCCACGGTCTCA
ACCTCAATTTGGGGCACCACATCTGGTGGTGGAGCTGCAGCCTTGGCCAC
TGGAGCTGTTTCCGGCTCTCGAGCGGGGACCACTGTCGGAGTAGGAGCAA
CCGCAGCTGATGTTGTACTTGCCGTTGGCTCCTCCTTTGCTTCTAATTCT
ATTTTAACAGGCTGCGCCTTGGGAATGATAATGGGTTCCTTTCGTGCTGG
AGGGGTTTCAGAAACAGGCGACTGCATCTGGTTAAATGCACTGATAGCAT
TGCCAATGCCACCGGTCCGACCTGTCTGGATGGCCGCCCTGCTGCCCTTT
GGAGGCGGTGCTTCCGTCGAGGTACGAGGAGTGTTCTCGGCCACAGTCTT
CTTGGCGGCTTCCTCCCGATCCCGCTTGTCTTTGGCCTCACGGAGACGTT
TCTGTTCCTCGGCCCGCTTACGTGACTCCTCCTCGGAG
BS08083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3637-PA | 1680 | Cortactin-RA | 759..1680 | 938..17 | 4585 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cortactin-RD | 2388 | CG3637-RD | 921..1848 | 938..11 | 4625 | 99.9 | Minus |
Cortactin-RC | 2391 | CG3637-RC | 924..1851 | 938..11 | 4625 | 99.9 | Minus |
Cortactin-RB | 2419 | CG3637-RB | 952..1879 | 938..11 | 4625 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21062220..21063147 | 11..938 | 4625 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:47:14 has no hits.
BS08083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:06 Download gff for
BS08083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3637-PA | 759..1680 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:02 Download gff for
BS08083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3637-PA | 759..1680 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:56 Download gff for
BS08083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 952..1879 | 11..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:27 Download gff for
BS08083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 952..1879 | 11..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:27 Download gff for
BS08083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21062220..21063147 | 11..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:56 Download gff for
BS08083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16887942..16888869 | 11..938 | 99 | | Plus |
BS08083.5prime Sequence
832 bp (825 high quality bases) assembled on 2006-01-06
> BS08083.5prime
GAAGTTATCAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGG
CCACCAGTGCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGAC
TTCGTGAACGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGAT
CGACGGCAGCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCG
AGGAGACGGAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGAT
CAGAACGCAGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCG
CATGGACAAGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGC
ACGCCTCGCAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTG
CAAGAGGATCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAA
GGTCGAGAAGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCA
AATTTGGAGTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGAT
CACATCGAGAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGG
CTTTGGCGGCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGG
TGGGATGGGACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGAC
CACAAGGTCAAGCCAGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTGC
CAAGTTCGAGAATCTGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGG
CCGAGGAACAGAAACGTCTCCGTGAGGCCNAG
BS08083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3637-PA | 1680 | Cortactin-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cortactin-RD | 2388 | CG3637-RD | 163..975 | 17..829 | 4065 | 100 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 166..978 | 17..829 | 4065 | 100 | Plus |
Cortactin-RB | 2419 | CG3637-RB | 194..1006 | 17..829 | 4065 | 100 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 418..700 | 383..665 | 305 | 74.3 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 529..811 | 272..554 | 305 | 74.3 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 421..703 | 383..665 | 305 | 74.3 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 532..814 | 272..554 | 305 | 74.3 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 484..588 | 560..664 | 195 | 79 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 706..810 | 338..442 | 195 | 79 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 487..591 | 560..664 | 195 | 79 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 709..813 | 338..442 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21063426..21063829 | 587..184 | 2020 | 100 | Minus |
3R | 32079331 | 3R | 21063093..21063335 | 829..587 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 21063898..21064064 | 183..17 | 835 | 100 | Minus |
3R | 32079331 | 3R | 21063459..21063741 | 665..383 | 305 | 73.9 | Minus |
3R | 32079331 | 3R | 21063426..21063630 | 476..272 | 215 | 73.7 | Minus |
3R | 32079331 | 3R | 21063571..21063675 | 664..560 | 195 | 79 | Minus |
Blast to na_te.dros performed 2015-02-12 12:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5609..5663 | 70..124 | 122 | 69.1 | Plus |
BS08083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:07 Download gff for
BS08083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3637-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:03 Download gff for
BS08083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3637-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:30:57 Download gff for
BS08083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 192..1009 | 14..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:32 Download gff for
BS08083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 192..1009 | 14..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:32 Download gff for
BS08083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21063090..21063334 | 588..832 | 99 | <- | Minus |
3R | 21063426..21063829 | 184..587 | 100 | <- | Minus |
3R | 21063898..21064066 | 14..183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:30:57 Download gff for
BS08083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16888812..16889056 | 588..832 | 99 | <- | Minus |
arm_3R | 16889148..16889551 | 184..587 | 100 | <- | Minus |
arm_3R | 16889620..16889788 | 14..183 | 99 | | Minus |
BS08083.complete Sequence
1712 bp assembled on 2009-02-12
GenBank Submission: MN238597
> BS08083.complete
GAAGTTATCAGTCGACATGTGGAAGGCAAGTGCCGGTCACCAGATTCAGG
CCACCAGTGCAGCCTCCGCGGAGGACGACGACTGGGAGACGGATCCGGAC
TTCGTGAACGATGTCAGTGAGCAGGAGCAGCGCTGGGGATCAAAGACGAT
CGACGGCAGCGGTCGCACAGCAGGCACCATCGACATGGACAAGCTGCGCG
AGGAGACGGAGCAGGCCGATCTGGACAAGAAGAAGCAGCTGCTGAAGGAT
CAGAACGCAGGATACGGATACGGGGGCAAGTTTGGCGTTGAGAAGGACCG
CATGGACAAGTCGGCTGTGGGTCATGACTACCAGGGCAAGGTGGGAAAGC
ACGCCTCGCAGAAGGACTACAGCGATGGTTTTGGGGGAAAGTTCGGAGTG
CAAGAGGATCGCAAGGACAAGTCTGCCGTGGGCTGGGACCACGTCGAAAA
GGTCGAGAAGCACGCCTCCCAGAAGGATTACGCCACCGGCTTCGGAGGCA
AATTTGGAGTGCAGTCCGATCGGGTGGATAAATCCGCCGTGGGCTGGGAT
CACATCGAGAAGGTGGAGAAGCACGAGTCTCAGAAGGATTACTCCAAGGG
CTTTGGCGGCAAGTTTGGCGTTCAGGAGGACCGAAAGGACAAGTCCGCGG
TGGGATGGGACCACAAAGAGGCTCCGCAGAAGCACGCCAGCCAGGTGGAC
CACAAGGTCAAGCCAGTCATCGAAGGTGCCAAGCCTTCCAATTTGCGTGC
CAAGTTCGAGAATCTGGCTAAAAACTCCGAGGAGGAGTCACGTAAGCGGG
CCGAGGAACAGAAACGTCTCCGTGAGGCCAAAGACAAGCGGGATCGGGAG
GAAGCCGCCAAGAAGACTGTGGCCGAGAACACTCCTCGTACCTCGACGGA
AGCACCGCCTCCAAAGGGCAGCAGGGCGGCCATCCAGACAGGTCGGACCG
GTGGCATTGGCAATGCTATCAGTGCATTTAACCAGATGCAGTCGCCTGTT
TCTGAAACCCCTCCAGCACGAAAGGAACCCATTATCATTCCCAAGGCGCA
GCCTGTTAAAATAGAATTAGAAGCAAAGGAGGAGCCAACGGCAAGTACAA
CATCAGCTGCGGTTGCTCCTACTCCGACAGTGGTCCCCGCTCGAGAGCCG
GAAACAGCTCCAGTGGCCAAGGCTGCAGCTCCACCACCAGATGTGGTGCC
CCAAATTGAGGTTGAGACCGTGGACACGCCTCCCAGAAGTGAGCCGCAAT
CACCAGTGTATGTGCCGACGCCTCAACCCGAAGTCCACGCCCAAGTCCAA
GTCCAACCTGAGCCGCAACCTCAAGCCGATCCTGAGCCAGTAGTTGAAGA
AGAGCCACTGTACCAGAACCAGGCCGAGATTAAGGCTGCCTCGCCCTTGC
CACCAACGAATGGAACCGTTTCAGAGGCTGTTGCTCCGAGTGGCACCGCA
ACCGTTCCCGAGGAGGCAATCTACGCGAACTCAGACAATTTGGCCGACTA
TCTGGAGGACACCGGAATCCACGCCATTGCCCTGTACGACTACCAGGCGG
CGGATGACGACGAGATATCCTTTGATCCAGATGACGTGATCACCCACATC
GAGAAGATCGACGATGGGTGGTGGAGGGGATTGTGCAAGAACCGCTACGG
ACTCTTTCCAGCCAACTACGTGCAGGTGGTGGGACAGAACTCATAAAAGC
TTTCGAGACCAT
BS08083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cortactin-RD | 1680 | CG3637-PD | 1..1680 | 17..1696 | 8385 | 99.9 | Plus |
Cortactin-RC | 1680 | CG3637-PC | 1..1680 | 17..1696 | 8385 | 99.9 | Plus |
Cortactin-RB | 1680 | CG3637-PB | 1..1680 | 17..1696 | 8385 | 99.9 | Plus |
Cortactin-RD | 1680 | CG3637-PD | 256..538 | 383..665 | 305 | 73.9 | Plus |
Cortactin-RD | 1680 | CG3637-PD | 367..649 | 272..554 | 305 | 73.9 | Plus |
Cortactin-RC | 1680 | CG3637-PC | 256..538 | 383..665 | 305 | 73.9 | Plus |
Cortactin-RC | 1680 | CG3637-PC | 367..649 | 272..554 | 305 | 73.9 | Plus |
Cortactin-RD | 1680 | CG3637-PD | 322..426 | 560..664 | 195 | 79 | Plus |
Cortactin-RD | 1680 | CG3637-PD | 544..648 | 338..442 | 195 | 79 | Plus |
Cortactin-RC | 1680 | CG3637-PC | 322..426 | 560..664 | 195 | 79 | Plus |
Cortactin-RC | 1680 | CG3637-PC | 544..648 | 338..442 | 195 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cortactin-RD | 2388 | CG3637-RD | 163..1848 | 17..1702 | 8415 | 99.9 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 166..1851 | 17..1702 | 8415 | 99.9 | Plus |
Cortactin-RB | 2419 | CG3637-RB | 194..1879 | 17..1702 | 8415 | 99.9 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 418..700 | 383..665 | 305 | 73.9 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 529..811 | 272..554 | 305 | 73.9 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 421..703 | 383..665 | 305 | 73.9 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 532..814 | 272..554 | 305 | 73.9 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 484..588 | 560..664 | 195 | 79 | Plus |
Cortactin-RD | 2388 | CG3637-RD | 706..810 | 338..442 | 195 | 79 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 487..591 | 560..664 | 195 | 79 | Plus |
Cortactin-RC | 2391 | CG3637-RC | 709..813 | 338..442 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21062220..21063335 | 1702..587 | 5565 | 99.9 | Minus |
3R | 32079331 | 3R | 21063426..21063829 | 587..184 | 2020 | 100 | Minus |
3R | 32079331 | 3R | 21063898..21064064 | 183..17 | 835 | 100 | Minus |
3R | 32079331 | 3R | 21063459..21063741 | 665..383 | 305 | 73.9 | Minus |
3R | 32079331 | 3R | 21063426..21063630 | 476..272 | 215 | 73.7 | Minus |
3R | 32079331 | 3R | 21063571..21063675 | 664..560 | 195 | 79 | Minus |
Blast to na_te.dros performed 2014-11-28 00:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5609..5663 | 70..124 | 122 | 69.1 | Plus |
BS08083.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:44 Download gff for
BS08083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RA | 214..1891 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:22 Download gff for
BS08083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 194..1871 | 17..1694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:01 Download gff for
BS08083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cortactin-RB | 194..1871 | 17..1694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:01 Download gff for
BS08083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21062228..21063334 | 588..1694 | 99 | <- | Minus |
3R | 21063426..21063829 | 184..587 | 100 | <- | Minus |
3R | 21063898..21064064 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:22 Download gff for
BS08083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16887950..16889056 | 588..1694 | 99 | <- | Minus |
arm_3R | 16889148..16889551 | 184..587 | 100 | <- | Minus |
arm_3R | 16889620..16889786 | 17..183 | 100 | | Minus |
BS08083.pep Sequence
Translation from 16 to 1695
> BS08083.pep
MWKASAGHQIQATSAASAEDDDWETDPDFVNDVSEQEQRWGSKTIDGSGR
TAGTIDMDKLREETEQADLDKKKQLLKDQNAGYGYGGKFGVEKDRMDKSA
VGHDYQGKVGKHASQKDYSDGFGGKFGVQEDRKDKSAVGWDHVEKVEKHA
SQKDYATGFGGKFGVQSDRVDKSAVGWDHIEKVEKHESQKDYSKGFGGKF
GVQEDRKDKSAVGWDHKEAPQKHASQVDHKVKPVIEGAKPSNLRAKFENL
AKNSEEESRKRAEEQKRLREAKDKRDREEAAKKTVAENTPRTSTEAPPPK
GSRAAIQTGRTGGIGNAISAFNQMQSPVSETPPARKEPIIIPKAQPVKIE
LEAKEEPTASTTSAAVAPTPTVVPAREPETAPVAKAAAPPPDVVPQIEVE
TVDTPPRSEPQSPVYVPTPQPEVHAQVQVQPEPQPQADPEPVVEEEPLYQ
NQAEIKAASPLPPTNGTVSEAVAPSGTATVPEEAIYANSDNLADYLEDTG
IHAIALYDYQAADDDEISFDPDDVITHIEKIDDGWWRGLCKNRYGLFPAN
YVQVVGQNS*
BS08083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cortactin-PD | 559 | CG3637-PD | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PC | 559 | CG3637-PC | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PB | 559 | CG3637-PB | 1..559 | 1..559 | 2942 | 100 | Plus |
Cortactin-PA | 559 | CG3637-PA | 1..559 | 1..559 | 2942 | 100 | Plus |
Abp1-PA | 531 | CG10083-PA | 184..530 | 248..555 | 293 | 29.1 | Plus |