Clone Sequence Records
BS08085.3prime Sequence
840 bp (839 high quality bases) assembled on 2006-01-06
> BS08085.3prime
ATGGTCTAGAAAGCTTTCAGAGAAAGAATTTGCCCAGCAGGAGGCTAACG
ATGGCCGCAGCAATGGCAACTGCAATGTAAAAGACCGGAATCTGCTTCTC
AGCCAGGACTGGGGCATAGGGCTCATTCACCTGTTTGACGGCCGGCGAGC
TCCGGAAACGTGTGATTTGATCCTTCAAGTGAAGATTCTCTCTTCGCAAT
TCAATGTTGCATTCACGCAGCGCTTTGATCTCTCCGGACAGCAAGTCCAG
ACTCTCAGACGTTTCGAGCAAATTGGATGGCTTAAACTTATCCTCGCTGG
AGAGCTTCGGCTTGCTCTCGAGCGCCTCAGCGCTGGCTGAGCTAGTATTG
GCACCCGCGCTTCCGCCTCCGGCAGCTCCGGTTCCGCCGCCAACGGCACC
ACCACCGCTGGTGTTCTCAGCATTTGCCTCAGCGGTGGGCATCTCGAAAA
CGCACTTCAGTTTGGCGTCCATCAGCTGCTCGGGCTCCAGATCCTTCCAC
AATTTATTTAAATCGCTTAGATCAGCATCCATGGGTGCCAGGACGCTCTG
CACCATGAACTTGTGCTTGTTCTTCTCCTGCTGATCGTAGACGAATGGCT
GAAGGCAGATCTCCACCTGGGTTGATCGAAAGGGAATTATCTTGCCGATG
TTTGGACGTACGCAGTAGCGTTTCGGGGCGGTTGTCTTGATCTTGAAGAC
CAGAGGCAGAGCCGAGTTGTTGCGCAGAGTCATGATTGTGACAACGGGTC
GGGTGAAGGGACCCACAAAACGCAACTCATGTTCTGGTTCAATGGTCAAC
GGAAGATCAAAGAGTGATTTGCTCATGTCGACTGATAACT
BS08085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5014-PB | 810 | Vap-33-1-RB | 1..810 | 826..17 | 4050 | 100 | Minus |
CG5014-PC | 810 | Vap-33-1-RC | 1..810 | 826..17 | 4050 | 100 | Minus |
CG5014-PD | 717 | Vap-33-1-RD | 1..717 | 733..17 | 3585 | 100 | Minus |
CG5014-PA | 708 | Vap-33-1-RA | 1..401 | 826..426 | 2005 | 100 | Minus |
CG5014-PA | 708 | Vap-33-1-RA | 393..708 | 332..17 | 1580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 3897 | CG5014-RE | 568..1378 | 826..16 | 4055 | 100 | Minus |
Vap-33A-RC | 3607 | CG5014-RC | 278..1088 | 826..16 | 4055 | 100 | Minus |
Vap-33A-RB | 2541 | CG5014-RB | 568..1378 | 826..16 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3951828..3952041 | 500..287 | 1070 | 100 | Minus |
X | 23542271 | X | 3952761..3952923 | 178..16 | 800 | 99.4 | Minus |
X | 23542271 | X | 3951414..3951567 | 763..610 | 770 | 100 | Minus |
X | 23542271 | X | 3952106..3952222 | 288..172 | 585 | 100 | Minus |
X | 23542271 | X | 3951636..3951745 | 609..500 | 550 | 100 | Minus |
X | 23542271 | X | 3949650..3949715 | 826..761 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:11:46 has no hits.
BS08085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:10 Download gff for
BS08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:07 Download gff for
BS08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:42 Download gff for
BS08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RB | 568..1381 | 13..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:15 Download gff for
BS08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33A-RB | 568..1381 | 13..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:15 Download gff for
BS08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3949650..3949713 | 763..826 | 100 | -> | Minus |
X | 3951415..3951567 | 610..762 | 100 | -> | Minus |
X | 3951636..3951745 | 500..609 | 100 | -> | Minus |
X | 3951829..3952041 | 287..499 | 100 | -> | Minus |
X | 3952108..3952221 | 173..286 | 100 | -> | Minus |
X | 3952767..3952926 | 13..172 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:42 Download gff for
BS08085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3843683..3843746 | 763..826 | 100 | -> | Minus |
arm_X | 3845448..3845600 | 610..762 | 100 | -> | Minus |
arm_X | 3845669..3845778 | 500..609 | 100 | -> | Minus |
arm_X | 3845862..3846074 | 287..499 | 100 | -> | Minus |
arm_X | 3846141..3846254 | 173..286 | 100 | -> | Minus |
arm_X | 3846800..3846959 | 13..172 | 99 | | Minus |
BS08085.5prime Sequence
840 bp (742 high quality bases) assembled on 2006-01-06
> BS08085.5prime
GAAGTTATCAGTCGACATGAGCAAATCACTCTTTGATCTTCCGTTGACCA
TTGAACCAGAACATGAGTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTT
GTCACAATCATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAA
GATCAAGACAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCGGCA
AGATAATTCCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCAGCCATTC
GTCTACGATCAGCAGGAGAAGAACAAGCACAAGTTCATGGTGCAGAGCGT
CCTGGCACCCATGGATGCTGATCTAAGCGATTTAAATAAATTGTGGAAGG
ATCTGGAGCCCGAGCAGCTGATGGACGCCAAACTGAAGTGCGTTTTCGAG
ATGCCCACCGCTGAGGCAAATGCTGAGAACACCAGCGGTGGTGGTGCCGT
TGGCGGCGGAACCGGAGCTGCCGGAGGCGGAAGCGCGGGTGCCAATACTA
GCTCAGCCAGCGCTGAGGCGCTCGAGAGCAAGCCGAAGCTCTCCAGCGAG
GATAAGTTTAAGCCATCCAATTTGCTCGAAACGTCTGAGAGTCTGGACTT
GCTGTCCGGAGAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAA
GAGAGAATCTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCG
GCCGTCAAACAGGTGAATGAGCCCTATGCCCCAGTCCTGGCTGAGAAGCA
GATTCCGGTCTTTTACATTGCAGTTGCCATTGCTGCGGCCATCGTTAGCC
TCCTGCTGGGCAAATTCTTTCTCTGAAAGCTTTCTAGAAC
BS08085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5014-PB | 810 | Vap-33-1-RB | 1..810 | 17..826 | 4050 | 100 | Plus |
CG5014-PC | 810 | Vap-33-1-RC | 1..810 | 17..826 | 4050 | 100 | Plus |
CG5014-PD | 717 | Vap-33-1-RD | 1..717 | 110..826 | 3585 | 100 | Plus |
CG5014-PA | 708 | Vap-33-1-RA | 1..401 | 17..417 | 2005 | 100 | Plus |
CG5014-PA | 708 | Vap-33-1-RA | 393..708 | 511..826 | 1580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 3897 | CG5014-RE | 568..1378 | 17..827 | 4055 | 100 | Plus |
Vap-33A-RC | 3607 | CG5014-RC | 278..1088 | 17..827 | 4055 | 100 | Plus |
Vap-33A-RB | 2541 | CG5014-RB | 568..1378 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3951828..3952041 | 343..556 | 1070 | 100 | Plus |
X | 23542271 | X | 3952761..3952923 | 665..827 | 800 | 99.4 | Plus |
X | 23542271 | X | 3951414..3951567 | 80..233 | 770 | 100 | Plus |
X | 23542271 | X | 3952106..3952222 | 555..671 | 585 | 100 | Plus |
X | 23542271 | X | 3951636..3951745 | 234..343 | 550 | 100 | Plus |
X | 23542271 | X | 3949650..3949715 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:31:15 has no hits.
BS08085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:11 Download gff for
BS08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:09 Download gff for
BS08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5014-PC | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:29 Download gff for
BS08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RB | 568..1381 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:31 Download gff for
BS08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33A-RB | 568..1381 | 17..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:31 Download gff for
BS08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3949650..3949713 | 17..80 | 100 | -> | Plus |
X | 3951415..3951567 | 81..233 | 100 | -> | Plus |
X | 3951636..3951745 | 234..343 | 100 | -> | Plus |
X | 3951829..3952041 | 344..556 | 100 | -> | Plus |
X | 3952108..3952221 | 557..670 | 100 | -> | Plus |
X | 3952767..3952924 | 671..829 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:29 Download gff for
BS08085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3846800..3846957 | 671..829 | 98 | -> | Plus |
arm_X | 3843683..3843746 | 17..80 | 100 | -> | Plus |
arm_X | 3845448..3845600 | 81..233 | 100 | -> | Plus |
arm_X | 3845669..3845778 | 234..343 | 100 | -> | Plus |
arm_X | 3845862..3846074 | 344..556 | 100 | -> | Plus |
arm_X | 3846141..3846254 | 557..670 | 100 | -> | Plus |
BS08085.complete Sequence
842 bp (842 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636095
> BS08085.complete
GAAGTTATCAGTCGACATGAGCAAATCACTCTTTGATCTTCCGTTGACCA
TTGAACCAGAACATGAGTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTT
GTCACAATCATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAA
GATCAAGACAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCGGCA
AGATAATTCCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCAGCCATTC
GTCTACGATCAGCAGGAGAAGAACAAGCACAAGTTCATGGTGCAGAGCGT
CCTGGCACCCATGGATGCTGATCTAAGCGATTTAAATAAATTGTGGAAGG
ATCTGGAGCCCGAGCAGCTGATGGACGCCAAACTGAAGTGCGTTTTCGAG
ATGCCCACCGCTGAGGCAAATGCTGAGAACACCAGCGGTGGTGGTGCCGT
TGGCGGCGGAACCGGAGCTGCCGGAGGCGGAAGCGCGGGTGCCAATACTA
GCTCAGCCAGCGCTGAGGCGCTCGAGAGCAAGCCGAAGCTCTCCAGCGAG
GATAAGTTTAAGCCATCCAATTTGCTCGAAACGTCTGAGAGTCTGGACTT
GCTGTCCGGAGAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAA
GAGAGAATCTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCG
GCCGTCAAACAGGTGAATGAGCCCTATGCCCCAGTCCTGGCTGAGAAGCA
GATTCCGGTCTTTTACATTGCAGTTGCCATTGCTGCGGCCATCGTTAGCC
TCCTGCTGGGCAAATTCTTTCTCTGAAAGCTTTCTAGACCAT
BS08085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 810 | CG5014-PE | 1..810 | 17..826 | 4050 | 100 | Plus |
Vap-33A-RC | 810 | CG5014-PC | 1..810 | 17..826 | 4050 | 100 | Plus |
Vap-33A-RB | 810 | CG5014-PB | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-RE | 3897 | CG5014-RE | 568..1378 | 17..827 | 4055 | 100 | Plus |
Vap-33A-RC | 3607 | CG5014-RC | 278..1088 | 17..827 | 4055 | 100 | Plus |
Vap-33A-RB | 2541 | CG5014-RB | 568..1378 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3951828..3952041 | 343..556 | 1070 | 100 | Plus |
X | 23542271 | X | 3952761..3952923 | 665..827 | 800 | 99.4 | Plus |
X | 23542271 | X | 3951414..3951567 | 80..233 | 770 | 100 | Plus |
X | 23542271 | X | 3952106..3952222 | 555..671 | 585 | 100 | Plus |
X | 23542271 | X | 3951636..3951745 | 234..343 | 550 | 100 | Plus |
X | 23542271 | X | 3949650..3949715 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:15:10 has no hits.
BS08085.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:58 Download gff for
BS08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RC | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:15 Download gff for
BS08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RC | 223..1036 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:05 Download gff for
BS08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RB | 568..1376 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:58 Download gff for
BS08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33-1-RC | 223..1036 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:02 Download gff for
BS08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33A-RB | 568..1376 | 17..825 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:02 Download gff for
BS08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3949650..3949713 | 17..80 | 100 | -> | Plus |
X | 3951415..3951567 | 81..233 | 100 | -> | Plus |
X | 3951636..3951745 | 234..343 | 100 | -> | Plus |
X | 3951829..3952041 | 344..556 | 100 | -> | Plus |
X | 3952108..3952221 | 557..670 | 100 | -> | Plus |
X | 3952767..3952921 | 671..825 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:05 Download gff for
BS08085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3843683..3843746 | 17..80 | 100 | -> | Plus |
arm_X | 3845448..3845600 | 81..233 | 100 | -> | Plus |
arm_X | 3845669..3845778 | 234..343 | 100 | -> | Plus |
arm_X | 3845862..3846074 | 344..556 | 100 | -> | Plus |
arm_X | 3846141..3846254 | 557..670 | 100 | -> | Plus |
arm_X | 3846800..3846954 | 671..825 | 100 | | Plus |
BS08085.pep Sequence
Translation from 16 to 825
> BS08085.pep
MSKSLFDLPLTIEPEHELRFVGPFTRPVVTIMTLRNNSALPLVFKIKTTA
PKRYCVRPNIGKIIPFRSTQVEICLQPFVYDQQEKNKHKFMVQSVLAPMD
ADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEANAENTSGGGAVGGGTG
AAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGEI
KALRECNIELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAEKQIPVFY
IAVAIAAAIVSLLLGKFFL*
BS08085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33A-PE | 269 | CG5014-PE | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PC | 269 | CG5014-PC | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PB | 269 | CG5014-PB | 1..269 | 1..269 | 1362 | 100 | Plus |
Vap-33A-PA | 235 | CG5014-PA | 1..235 | 1..269 | 1148 | 87.4 | Plus |
fan-PA | 218 | CG7919-PA | 9..140 | 10..145 | 210 | 35 | Plus |