Clone BS08085 Report

Search the DGRC for BS08085

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptVap-33A-RB
Protein status:BS08085.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08085.3prime Sequence

840 bp (839 high quality bases) assembled on 2006-01-06

> BS08085.3prime
ATGGTCTAGAAAGCTTTCAGAGAAAGAATTTGCCCAGCAGGAGGCTAACG
ATGGCCGCAGCAATGGCAACTGCAATGTAAAAGACCGGAATCTGCTTCTC
AGCCAGGACTGGGGCATAGGGCTCATTCACCTGTTTGACGGCCGGCGAGC
TCCGGAAACGTGTGATTTGATCCTTCAAGTGAAGATTCTCTCTTCGCAAT
TCAATGTTGCATTCACGCAGCGCTTTGATCTCTCCGGACAGCAAGTCCAG
ACTCTCAGACGTTTCGAGCAAATTGGATGGCTTAAACTTATCCTCGCTGG
AGAGCTTCGGCTTGCTCTCGAGCGCCTCAGCGCTGGCTGAGCTAGTATTG
GCACCCGCGCTTCCGCCTCCGGCAGCTCCGGTTCCGCCGCCAACGGCACC
ACCACCGCTGGTGTTCTCAGCATTTGCCTCAGCGGTGGGCATCTCGAAAA
CGCACTTCAGTTTGGCGTCCATCAGCTGCTCGGGCTCCAGATCCTTCCAC
AATTTATTTAAATCGCTTAGATCAGCATCCATGGGTGCCAGGACGCTCTG
CACCATGAACTTGTGCTTGTTCTTCTCCTGCTGATCGTAGACGAATGGCT
GAAGGCAGATCTCCACCTGGGTTGATCGAAAGGGAATTATCTTGCCGATG
TTTGGACGTACGCAGTAGCGTTTCGGGGCGGTTGTCTTGATCTTGAAGAC
CAGAGGCAGAGCCGAGTTGTTGCGCAGAGTCATGATTGTGACAACGGGTC
GGGTGAAGGGACCCACAAAACGCAACTCATGTTCTGGTTCAATGGTCAAC
GGAAGATCAAAGAGTGATTTGCTCATGTCGACTGATAACT

BS08085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5014-PB 810 Vap-33-1-RB 1..810 826..17 4050 100 Minus
CG5014-PC 810 Vap-33-1-RC 1..810 826..17 4050 100 Minus
CG5014-PD 717 Vap-33-1-RD 1..717 733..17 3585 100 Minus
CG5014-PA 708 Vap-33-1-RA 1..401 826..426 2005 100 Minus
CG5014-PA 708 Vap-33-1-RA 393..708 332..17 1580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33A-RE 3897 CG5014-RE 568..1378 826..16 4055 100 Minus
Vap-33A-RC 3607 CG5014-RC 278..1088 826..16 4055 100 Minus
Vap-33A-RB 2541 CG5014-RB 568..1378 826..16 4055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3951828..3952041 500..287 1070 100 Minus
X 23542271 X 3952761..3952923 178..16 800 99.4 Minus
X 23542271 X 3951414..3951567 763..610 770 100 Minus
X 23542271 X 3952106..3952222 288..172 585 100 Minus
X 23542271 X 3951636..3951745 609..500 550 100 Minus
X 23542271 X 3949650..3949715 826..761 330 100 Minus
Blast to na_te.dros performed on 2015-02-06 11:11:46 has no hits.

BS08085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:10 Download gff for BS08085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5014-PC 1..810 17..826 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:07 Download gff for BS08085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5014-PC 1..810 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:42 Download gff for BS08085.3prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33-1-RB 568..1381 13..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:15 Download gff for BS08085.3prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33A-RB 568..1381 13..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:15 Download gff for BS08085.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3949650..3949713 763..826 100 -> Minus
X 3951415..3951567 610..762 100 -> Minus
X 3951636..3951745 500..609 100 -> Minus
X 3951829..3952041 287..499 100 -> Minus
X 3952108..3952221 173..286 100 -> Minus
X 3952767..3952926 13..172 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:42 Download gff for BS08085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3843683..3843746 763..826 100 -> Minus
arm_X 3845448..3845600 610..762 100 -> Minus
arm_X 3845669..3845778 500..609 100 -> Minus
arm_X 3845862..3846074 287..499 100 -> Minus
arm_X 3846141..3846254 173..286 100 -> Minus
arm_X 3846800..3846959 13..172 99   Minus

BS08085.5prime Sequence

840 bp (742 high quality bases) assembled on 2006-01-06

> BS08085.5prime
GAAGTTATCAGTCGACATGAGCAAATCACTCTTTGATCTTCCGTTGACCA
TTGAACCAGAACATGAGTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTT
GTCACAATCATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAA
GATCAAGACAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCGGCA
AGATAATTCCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCAGCCATTC
GTCTACGATCAGCAGGAGAAGAACAAGCACAAGTTCATGGTGCAGAGCGT
CCTGGCACCCATGGATGCTGATCTAAGCGATTTAAATAAATTGTGGAAGG
ATCTGGAGCCCGAGCAGCTGATGGACGCCAAACTGAAGTGCGTTTTCGAG
ATGCCCACCGCTGAGGCAAATGCTGAGAACACCAGCGGTGGTGGTGCCGT
TGGCGGCGGAACCGGAGCTGCCGGAGGCGGAAGCGCGGGTGCCAATACTA
GCTCAGCCAGCGCTGAGGCGCTCGAGAGCAAGCCGAAGCTCTCCAGCGAG
GATAAGTTTAAGCCATCCAATTTGCTCGAAACGTCTGAGAGTCTGGACTT
GCTGTCCGGAGAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAA
GAGAGAATCTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCG
GCCGTCAAACAGGTGAATGAGCCCTATGCCCCAGTCCTGGCTGAGAAGCA
GATTCCGGTCTTTTACATTGCAGTTGCCATTGCTGCGGCCATCGTTAGCC
TCCTGCTGGGCAAATTCTTTCTCTGAAAGCTTTCTAGAAC

BS08085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5014-PB 810 Vap-33-1-RB 1..810 17..826 4050 100 Plus
CG5014-PC 810 Vap-33-1-RC 1..810 17..826 4050 100 Plus
CG5014-PD 717 Vap-33-1-RD 1..717 110..826 3585 100 Plus
CG5014-PA 708 Vap-33-1-RA 1..401 17..417 2005 100 Plus
CG5014-PA 708 Vap-33-1-RA 393..708 511..826 1580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33A-RE 3897 CG5014-RE 568..1378 17..827 4055 100 Plus
Vap-33A-RC 3607 CG5014-RC 278..1088 17..827 4055 100 Plus
Vap-33A-RB 2541 CG5014-RB 568..1378 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3951828..3952041 343..556 1070 100 Plus
X 23542271 X 3952761..3952923 665..827 800 99.4 Plus
X 23542271 X 3951414..3951567 80..233 770 100 Plus
X 23542271 X 3952106..3952222 555..671 585 100 Plus
X 23542271 X 3951636..3951745 234..343 550 100 Plus
X 23542271 X 3949650..3949715 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:31:15 has no hits.

BS08085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:11 Download gff for BS08085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5014-PC 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:09 Download gff for BS08085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5014-PC 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:29 Download gff for BS08085.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33-1-RB 568..1381 17..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:31 Download gff for BS08085.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33A-RB 568..1381 17..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:31 Download gff for BS08085.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3949650..3949713 17..80 100 -> Plus
X 3951415..3951567 81..233 100 -> Plus
X 3951636..3951745 234..343 100 -> Plus
X 3951829..3952041 344..556 100 -> Plus
X 3952108..3952221 557..670 100 -> Plus
X 3952767..3952924 671..829 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:29 Download gff for BS08085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3846800..3846957 671..829 98 -> Plus
arm_X 3843683..3843746 17..80 100 -> Plus
arm_X 3845448..3845600 81..233 100 -> Plus
arm_X 3845669..3845778 234..343 100 -> Plus
arm_X 3845862..3846074 344..556 100 -> Plus
arm_X 3846141..3846254 557..670 100 -> Plus

BS08085.complete Sequence

842 bp (842 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636095

> BS08085.complete
GAAGTTATCAGTCGACATGAGCAAATCACTCTTTGATCTTCCGTTGACCA
TTGAACCAGAACATGAGTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTT
GTCACAATCATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAA
GATCAAGACAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCGGCA
AGATAATTCCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCAGCCATTC
GTCTACGATCAGCAGGAGAAGAACAAGCACAAGTTCATGGTGCAGAGCGT
CCTGGCACCCATGGATGCTGATCTAAGCGATTTAAATAAATTGTGGAAGG
ATCTGGAGCCCGAGCAGCTGATGGACGCCAAACTGAAGTGCGTTTTCGAG
ATGCCCACCGCTGAGGCAAATGCTGAGAACACCAGCGGTGGTGGTGCCGT
TGGCGGCGGAACCGGAGCTGCCGGAGGCGGAAGCGCGGGTGCCAATACTA
GCTCAGCCAGCGCTGAGGCGCTCGAGAGCAAGCCGAAGCTCTCCAGCGAG
GATAAGTTTAAGCCATCCAATTTGCTCGAAACGTCTGAGAGTCTGGACTT
GCTGTCCGGAGAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAA
GAGAGAATCTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCG
GCCGTCAAACAGGTGAATGAGCCCTATGCCCCAGTCCTGGCTGAGAAGCA
GATTCCGGTCTTTTACATTGCAGTTGCCATTGCTGCGGCCATCGTTAGCC
TCCTGCTGGGCAAATTCTTTCTCTGAAAGCTTTCTAGACCAT

BS08085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33A-RE 810 CG5014-PE 1..810 17..826 4050 100 Plus
Vap-33A-RC 810 CG5014-PC 1..810 17..826 4050 100 Plus
Vap-33A-RB 810 CG5014-PB 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33A-RE 3897 CG5014-RE 568..1378 17..827 4055 100 Plus
Vap-33A-RC 3607 CG5014-RC 278..1088 17..827 4055 100 Plus
Vap-33A-RB 2541 CG5014-RB 568..1378 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3951828..3952041 343..556 1070 100 Plus
X 23542271 X 3952761..3952923 665..827 800 99.4 Plus
X 23542271 X 3951414..3951567 80..233 770 100 Plus
X 23542271 X 3952106..3952222 555..671 585 100 Plus
X 23542271 X 3951636..3951745 234..343 550 100 Plus
X 23542271 X 3949650..3949715 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:15:10 has no hits.

BS08085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:58 Download gff for BS08085.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33-1-RC 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:15 Download gff for BS08085.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33-1-RC 223..1036 17..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:05 Download gff for BS08085.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33-1-RB 568..1376 17..825 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:58 Download gff for BS08085.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33-1-RC 223..1036 17..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:02 Download gff for BS08085.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33A-RB 568..1376 17..825 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:02 Download gff for BS08085.complete
Subject Subject Range Query Range Percent Splice Strand
X 3949650..3949713 17..80 100 -> Plus
X 3951415..3951567 81..233 100 -> Plus
X 3951636..3951745 234..343 100 -> Plus
X 3951829..3952041 344..556 100 -> Plus
X 3952108..3952221 557..670 100 -> Plus
X 3952767..3952921 671..825 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:05 Download gff for BS08085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3843683..3843746 17..80 100 -> Plus
arm_X 3845448..3845600 81..233 100 -> Plus
arm_X 3845669..3845778 234..343 100 -> Plus
arm_X 3845862..3846074 344..556 100 -> Plus
arm_X 3846141..3846254 557..670 100 -> Plus
arm_X 3846800..3846954 671..825 100   Plus

BS08085.pep Sequence

Translation from 16 to 825

> BS08085.pep
MSKSLFDLPLTIEPEHELRFVGPFTRPVVTIMTLRNNSALPLVFKIKTTA
PKRYCVRPNIGKIIPFRSTQVEICLQPFVYDQQEKNKHKFMVQSVLAPMD
ADLSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEANAENTSGGGAVGGGTG
AAGGGSAGANTSSASAEALESKPKLSSEDKFKPSNLLETSESLDLLSGEI
KALRECNIELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAEKQIPVFY
IAVAIAAAIVSLLLGKFFL*

BS08085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33A-PE 269 CG5014-PE 1..269 1..269 1362 100 Plus
Vap-33A-PC 269 CG5014-PC 1..269 1..269 1362 100 Plus
Vap-33A-PB 269 CG5014-PB 1..269 1..269 1362 100 Plus
Vap-33A-PA 235 CG5014-PA 1..235 1..269 1148 87.4 Plus
fan-PA 218 CG7919-PA 9..140 10..145 210 35 Plus