Clone Sequence Records
BS08086.3prime Sequence
923 bp (869 high quality bases) assembled on 2006-01-06
> BS08086.3prime
ATGGTCTAGAAAGCTTCTATACTGTGGTGGTGTCGACAGCTTCGATGCGT
GCACCACCCACGTCGCCTCCTGCCACAGTTACGGCCTCCCCTCCGTTTTG
CGCGTCTGCTTTTCCATCCTCGCCTGCACCGGCATTGGCACCAGTGGAGC
TAGCACTTTTCTTCTCGCCAAATTGGATCAGTTCTACGTTGACGAGAATA
GTCTTGGTCTGCACAGGCGTTGCAGTCTCAGCTGACTCTGCTTTCTCACC
GCCCTCCCCTGCGGCGGCAGCTGGGGCTGTCTCGCCACCAGTGGTAATGG
TGAGCGAGAGATCGTTGAGAGACTTCAACACCTTGTCCATGTCGTCCTGG
GTACTGGGAACCCCCTTGCGGTTTCCAAAGTGCAGGAAACACTTTCCGAA
GTGTCCCTTCCAAGAAATTGACATCGGAGTGCATTCGCGTTTGCGGAGCT
CCGACTTTAAGTCCTTGACGCGAATATCACGAGACAGATTTGTCAACTTA
ATGCAAAAATCACTGTTCTTGTTCTTCTTTGAACGACGCTCATCAGTGCC
AGCCTCTGGTAACTTACGATCATCAGTTTTAGCACCTGCTTCCACACCAG
ACTGATCGCCCTCAGACTTAGTTGTACGTCTGCGGCGATTGACGAAACGA
CCTTTGCGCCGCGGAGTGCGTTTCTGAGCAGTCTCGCCCTGCGGCTGTTC
GTTGTCAGTCTGCGAAGTGGTGCGACCTGNGTTTCCTCGTTGGATGCGCC
GGCGCACAGGCCCACGGCGGCGTCTGTTGTTTTGATGTTGCTCCACATCG
GTGTCTTCCTCCTTGAGGGATATGGATTTTCCCGCCTTCTCCTCCCTTTC
CTTAAGCTGCTGCAGCACGGGGCATATTTTTAGACGGCGCTCGGACAGCA
GCTCCCAGTAAACGCCATTGGGG
BS08086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14648-PA | 1638 | CG14648-RA | 732..1638 | 923..17 | 4466 | 99.6 | Minus |
| CG14648-PB | 1017 | CG14648-RB | 111..1017 | 923..17 | 4466 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lost-RA | 2691 | CG14648-RA | 858..1764 | 923..17 | 4494 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4405866..4406255 | 406..17 | 1950 | 100 | Minus |
| 3R | 32079331 | 3R | 4405182..4405420 | 923..685 | 1154 | 98.7 | Minus |
| 3R | 32079331 | 3R | 4405599..4405812 | 618..405 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 4405480..4405548 | 685..617 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:01:17 has no hits.
BS08086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:12 Download gff for
BS08086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14648-PA | 732..1638 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:10 Download gff for
BS08086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14648-PB | 111..1017 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:55 Download gff for
BS08086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RB | 703..1618 | 10..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:53 Download gff for
BS08086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 858..1773 | 10..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:53 Download gff for
BS08086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4405601..4405811 | 406..616 | 100 | -> | Minus |
| 3R | 4405867..4406254 | 18..405 | 100 | -> | Minus |
| 3R | 4405182..4405419 | 686..923 | 98 | -> | Minus |
| 3R | 4405480..4405548 | 617..685 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:55 Download gff for
BS08086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 230904..231141 | 686..923 | 98 | -> | Minus |
| arm_3R | 231202..231270 | 617..685 | 100 | -> | Minus |
| arm_3R | 231323..231533 | 406..616 | 100 | -> | Minus |
| arm_3R | 231589..231976 | 18..405 | 100 | -> | Minus |
BS08086.5prime Sequence
864 bp (863 high quality bases) assembled on 2006-01-06
> BS08086.5prime
GAAGTTATCAGTCGACATGGAGGACCAAAGCAACGCAGCCCCCGCTGTCG
CCGCGGAGAACGGCGGAAACACCGCGCAGGAGGTGTCTTCGACAACTCAG
CCCATAGAGCCCACAAAGCGCTCGCTGCGCGTGCAGACCTGGAAAAAGAT
CCAAGAGGGCAAGGTTGGCATTGGATTCAACAACATATTTAACCGAATTC
CTTCGTTCGTGGGTGCCGATAAGGCTGCTGCCTTGTTTGCCAATGAAGAG
GAGTTCAAGAAAGCACAGCACATCAAGGTGAACATCGATCGCGTCTTGCA
TGAGTTTAAGGAACTGGCATTGCTGGCCGACAAGTCCGTATACTTGCCCA
GCACCCGCGAATCTTCTGCACTGTGCCTAAAGGTAGATGTGCTGGCCGAT
GCCACCGAGGAGCAGAAAAAGGAGGCTCTGCGCGTTCAAGATATTCAAAA
GTTTCGCTCGGAAATTGGATTGGACAGCGGTCTGAAGCTGGACATCGTGG
TTATTGGCTCTGTTGTAGTGTCACGCGAGGGTTACCGCATTGGACGCGGA
AATGGTTTCGCTGATCTGGACATCGGCCTCCTTATTGAACTGGGAGCCAT
TACACCGAAGACAATTATTGTCACAATCGTGCACGACATGCAGGTGGTGG
ACTCACTGCCCCCGAATCTATTCCAGAAGTACGATACGCCAGTTGATATC
ATTGCAACACCCACAGAAATAATCAGGGTGCCAAAGCGCTTGTCTTTCCC
CAATGGCGTTTACTGGGAGCTGCTGTCCGAGCGCCGTCTAAAAATATTGC
CCGTGCTGCAGCAGCTTAAGGAAAGGGAGGAGAAGGCGGGAAAATCCATA
TCCCTCAAGGAGGA
BS08086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14648-PA | 1638 | CG14648-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG14648-PB | 1017 | CG14648-RB | 1..227 | 638..864 | 1135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lost-RA | 2691 | CG14648-RA | 127..974 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4404697..4405298 | 263..864 | 2995 | 99.8 | Plus |
| 3R | 32079331 | 3R | 4404465..4404639 | 92..266 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 4403202..4403280 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:03:12 has no hits.
BS08086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:13 Download gff for
BS08086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14648-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:11 Download gff for
BS08086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14648-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:53:28 Download gff for
BS08086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 151..1000 | 12..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:02 Download gff for
BS08086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 124..973 | 12..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:02 Download gff for
BS08086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4403199..4403280 | 12..95 | 97 | -> | Plus |
| 3R | 4404469..4404639 | 96..266 | 100 | -> | Plus |
| 3R | 4404701..4405297 | 267..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:53:28 Download gff for
BS08086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 228921..229002 | 12..95 | 97 | -> | Plus |
| arm_3R | 230191..230361 | 96..266 | 100 | -> | Plus |
| arm_3R | 230423..231019 | 267..863 | 100 | | Plus |
BS08086.complete Sequence
1670 bp assembled on 2007-10-26
GenBank Submission: FJ636096
> BS08086.complete
GAAGTTATCAGTCGACATGGAGGACCAAAGCAACGCAGCCCCCGCTGTCG
CCGCGGAGAACGGCGGAAACACCGCGCAGGAGGTGTCTTCGACAACTCAG
CCCATAGAGCCCACAAAGCGCTCGCTGCGCGTGCAGACCTGGAAAAAGAT
CCAAGAGGGCAAGGTTGGCATTGGATTCAACAACATATTTAACCGAATTC
CTTCGTTCGTGGGTGCCGATAAGGCTGCTGCCTTGTTTGCCAATGAAGAG
GAGTTCAAGAAAGCACAGCACATCAAGGTGAACATCGATCGCGTCTTGCA
TGAGTTTAAGGAACTGGCATTGCTGGCCGACAAGTCCGTATACTTGCCCA
GCACCCGCGAATCTTCTGCACTGTGCCTAAAGGTAGATGTGCTGGCCGAT
GCCACCGAGGAGCAGAAAAAGGAGGCTCTGCGCGTTCAAGATATTCAAAA
GTTTCGCTCGGAAATTGGATTGGACAGCGGTCTGAAGCTGGACATCGTGG
TTATTGGCTCTGTTGTAGTGTCACGCGAGGGTTACCGCATTGGACGCGGA
AATGGTTTCGCTGATCTGGACATCGGCCTCCTTATTGAACTGGGAGCCAT
TACACCGAAGACAATTATTGTCACAATCGTGCACGACATGCAGGTGGTGG
ACTCACTGCCCCCGAATCTATTCCAGAAGTACGATACGCCAGTTGATATC
ATTGCAACACCCACAGAAATAATCAGGGTGCCAAAGCGCTTGTCTTTCCC
CAATGGCGTTTACTGGGAGCTGCTGTCCGAGCGCCGTCTAAAAATATTGC
CCGTGCTGCAGCAGCTTAAGGAAAGGGAGGAGAAGGCGGGAAAATCCATA
TCCCTCAAGGAGGAAGACACCGATGTGGAGCAACATCAAAACAACAGACG
CCGCCGTGGGCCTGTGCGCCGGCGCATCCAACGAGGAAACCCAGGTCGCA
CCACTTCGCAGACTGACAACGAACAGCCGCAGGGCGAGACTGCTCAGAAA
CGCACTCCGCGGCGCAAAGGTCGTTTCGTCAATCGCCGCAGACGTACAAC
TAAGTCTGAGGGCGATCAGTCTGGTGTGGAAGCAGGTGCTAAAACTGATG
ATCGTAAGTTACCAGAGGCTGGCACTGATGAGCGTCGTTCAAAGAAGAAC
AAGAACAGTGATTTTTGCATTAAGTTGACAAATCTGTCTCGTGATATTCG
CGTCAAGGACTTAAAGTCGGAGCTCCGCAAACGCGAATGCACTCCGATGT
CAATTTCTTGGAAGGGACACTTCGGAAAGTGTTTCCTGCACTTTGGAAAC
CGCAAGGGGGTTCCCAGTACCCAGGACGACATGGACAAGGTGTTGAAGTC
TCTCAACGATCTCTCGCTCACCATTACCACTGGTGGCGAGACAGCCCCAG
CTGCCGCCGCAGGGGAGGGCGGTGAGAAAGCAGAGTCAGCTGAGACTGCA
ACGCCTGTGCAGACCAAGACTATTCTCGTCAACGTAGAACTGATCCAATT
TGGCGAGAAGAAAAGTGCTAGCTCCACTGGTGCCAATGCCGGTGCAGGCG
AGGATGGAAAAGCAGACGCGCAAAACGGAGGGGAGGCCGTAACTGTGGCA
GGAGGCGACGTGGGTGGTGCACGCATCGAAGCTGTCGACACCACCACAGT
ATAGAAGCTTTCTAGACCAT
BS08086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lost-RA | 1638 | CG14648-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lost-RA | 2691 | CG14648-RA | 127..1764 | 17..1654 | 8190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4404697..4405420 | 263..986 | 3605 | 99.9 | Plus |
| 3R | 32079331 | 3R | 4405866..4406255 | 1265..1654 | 1950 | 100 | Plus |
| 3R | 32079331 | 3R | 4405599..4405812 | 1053..1266 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 4404465..4404639 | 92..266 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 4403202..4403280 | 17..95 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 4405480..4405548 | 986..1054 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:44 has no hits.
BS08086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:09 Download gff for
BS08086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| growl-RA | 1..1638 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:38:56 Download gff for
BS08086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| growl-RA | 151..1800 | 12..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:58 Download gff for
BS08086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 154..1791 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:46 Download gff for
BS08086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| growl-RA | 154..1791 | 17..1654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:13 Download gff for
BS08086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lost-RA | 127..1764 | 17..1654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:13 Download gff for
BS08086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4403202..4403280 | 17..95 | 100 | -> | Plus |
| 3R | 4404469..4404639 | 96..266 | 100 | -> | Plus |
| 3R | 4404701..4405419 | 267..985 | 100 | -> | Plus |
| 3R | 4405480..4405548 | 986..1054 | 100 | -> | Plus |
| 3R | 4405601..4405811 | 1055..1265 | 100 | -> | Plus |
| 3R | 4405867..4406255 | 1266..1654 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:58 Download gff for
BS08086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 228924..229002 | 17..95 | 100 | -> | Plus |
| arm_3R | 230191..230361 | 96..266 | 100 | -> | Plus |
| arm_3R | 230423..231141 | 267..985 | 100 | -> | Plus |
| arm_3R | 231202..231270 | 986..1054 | 100 | -> | Plus |
| arm_3R | 231323..231533 | 1055..1265 | 100 | -> | Plus |
| arm_3R | 231589..231977 | 1266..1654 | 100 | | Plus |
BS08086.pep Sequence
Translation from 16 to 1653
> BS08086.pep
MEDQSNAAPAVAAENGGNTAQEVSSTTQPIEPTKRSLRVQTWKKIQEGKV
GIGFNNIFNRIPSFVGADKAAALFANEEEFKKAQHIKVNIDRVLHEFKEL
ALLADKSVYLPSTRESSALCLKVDVLADATEEQKKEALRVQDIQKFRSEI
GLDSGLKLDIVVIGSVVVSREGYRIGRGNGFADLDIGLLIELGAITPKTI
IVTIVHDMQVVDSLPPNLFQKYDTPVDIIATPTEIIRVPKRLSFPNGVYW
ELLSERRLKILPVLQQLKEREEKAGKSISLKEEDTDVEQHQNNRRRRGPV
RRRIQRGNPGRTTSQTDNEQPQGETAQKRTPRRKGRFVNRRRRTTKSEGD
QSGVEAGAKTDDRKLPEAGTDERRSKKNKNSDFCIKLTNLSRDIRVKDLK
SELRKRECTPMSISWKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLNDLS
LTITTGGETAPAAAAGEGGEKAESAETATPVQTKTILVNVELIQFGEKKS
ASSTGANAGAGEDGKADAQNGGEAVTVAGGDVGGARIEAVDTTTV*
BS08086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lost-PA | 545 | CG14648-PA | 1..545 | 1..545 | 2759 | 100 | Plus |
