Clone Sequence Records
BS08087.3prime Sequence
953 bp (846 high quality bases) assembled on 2006-01-06
> BS08087.3prime
ATGGTCTAGAAAGCTTTCACAGTCCATTGTATATGCGATTGATGGAGGAT
TGGTCGAGTATTTTCTTGAGCGCTTCCTTGTCCTCCTCCGTAAGATCCTT
CTTGGGGAACTCCACATCGAAGGTGATGTACAGGTTGCCGGTGAGGTTGT
TGTTCTCAAAGTTGGGCATGCCCTCGCCCTTCTTGCGGATTCTAGCGCCG
GGCCACGTTACCTTCTCTCTCGTGACGGGCACCAGGTGTCCATCAAGGTG
CTTGATCTCCATGGAGAAGCCGACAAGGGCATCCTGCAGACTGATGGTCA
CGTTCGTGTACAGATCATCATTCTTGCGCAGGAATCGCGGATGCGGCATT
TGTTGAACCCGCACAATGAGGTCGCCGGGCTCCCCATCGATATGTGGCTC
CCCCTCGGCCACGAACCTCGTCTCTTGGCCGTCGACCATGCCCTGTTCCA
CCTCGATCTCCAATGTGCGCTCCTCGTTGACTAGCTTCACGTTGGGACAC
TCGTCGCACACCGTCTGTTGGATCATCTGGAAGCGCCCGGGTCCAAGGTT
CCGGGTGACCATCTCCTGGCGGCAGTTGCATTTCCTGGTGCCTGAGGCGG
GTTTCGTTACAGGCTTGTTCCTCACAATTTCCACAAAGTTTCCGGAGTAT
AGCTCCTCCAGGGAAACGTACAAGTCCATTACGATATCGGCGCCTCGCGG
AGCATCTTGCTGCTGGCCATCACCACCGAAGTGAAAGCCGAAGTCCCCAA
AGAAGCTAGAGAACGGATCACCACCGTGATCCATCATGCCCTCCTTCTTG
AGGCATTCCTCGCCGCAGCGGTCGTAGGTCTTCCGTTTGTCCGGATTGGA
GAGGACTTCGTAGGCCGCTCCCANGTCCTGGAACTTTGTGGAGGCATCCG
GGTCGTCCTTGTTTCTATCCGGATGCAGCTCCTTTGGCAAACGGCGATAC
GCC
BS08087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-PA | 1065 | CG4164-RA | 129..1065 | 953..17 | 4566 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1488 | CG4164-RA | 283..1220 | 953..16 | 4619 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 453390..454270 | 953..73 | 4334 | 99.4 | Minus |
2L | 23513712 | 2L | 454803..454929 | 199..73 | 605 | 98.4 | Minus |
2L | 23513712 | 2L | 454328..454386 | 74..16 | 295 | 100 | Minus |
2L | 23513712 | 2L | 454987..455045 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 15:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1348..1483 | 621..484 | 126 | 57.6 | Minus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2230..2365 | 621..484 | 109 | 55.4 | Minus |
BS08087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:15 Download gff for
BS08087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 129..1065 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:13 Download gff for
BS08087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 129..1065 | 17..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:13 Download gff for
BS08087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 283..1220 | 16..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:28 Download gff for
BS08087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 283..1220 | 16..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:28 Download gff for
BS08087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 453390..454270 | 73..953 | 99 | -> | Minus |
2L | 454330..454386 | 16..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:13 Download gff for
BS08087.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 453390..454270 | 73..953 | 99 | -> | Minus |
arm_2L | 454330..454386 | 16..72 | 100 | | Minus |
BS08087.5prime Sequence
905 bp (811 high quality bases) assembled on 2006-01-06
> BS08087.5prime
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAGGTAACGTGGCCCGG
CGCTA
BS08087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-PA | 1065 | CG4164-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1488 | CG4164-RA | 151..1043 | 13..905 | 4450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 453258..454150 | 13..905 | 4450 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 23:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1348..1483 | 477..614 | 126 | 57.6 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2230..2365 | 477..614 | 109 | 55.4 | Plus |
BS08087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:16 Download gff for
BS08087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:14 Download gff for
BS08087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:27 Download gff for
BS08087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 151..1042 | 13..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:27 Download gff for
BS08087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 151..1042 | 13..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:27 Download gff for
BS08087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 453258..454149 | 13..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:27 Download gff for
BS08087.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 453258..454149 | 13..904 | 99 | | Plus |
BS08087.complete Sequence
1097 bp (1097 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636097
> BS08087.complete
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAGGTAACGTGGCCCGG
CGCTAGAATCCGCAAGAAGGGCGAGGGCATGCCCAACTTTGAGAACAACA
ACCTCACCGGCAACCTGTACATCACCTTCGATGTGGAGTTCCCCAAGAAG
GATCTTACGGAGGAGGACAAGGAAGCGCTCAAGAAAATACTCGACCAATC
CTCCATCAATCGCATATACAATGGACTGTGAAAGCTTTCTAGACCAT
BS08087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1065 | CG4164-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-RA | 1488 | CG4164-RA | 151..1220 | 13..1082 | 5335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 453258..454270 | 13..1025 | 5050 | 99.9 | Plus |
2L | 23513712 | 2L | 454803..454929 | 899..1025 | 605 | 98.4 | Plus |
2L | 23513712 | 2L | 454328..454386 | 1024..1082 | 295 | 100 | Plus |
2L | 23513712 | 2L | 454987..455045 | 1024..1082 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1348..1483 | 477..614 | 126 | 57.6 | Plus |
BS08087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:24 Download gff for
BS08087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:34 Download gff for
BS08087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 148..1217 | 13..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:33 Download gff for
BS08087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 155..1218 | 17..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:24 Download gff for
BS08087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 148..1217 | 13..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:29 Download gff for
BS08087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4164-RA | 155..1218 | 17..1080 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:29 Download gff for
BS08087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 453262..454270 | 17..1025 | 100 | -> | Plus |
2L | 454330..454384 | 1026..1080 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:33 Download gff for
BS08087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 453262..454270 | 17..1025 | 100 | -> | Plus |
arm_2L | 454330..454384 | 1026..1080 | 100 | | Plus |
BS08087.pep Sequence
Translation from 16 to 1080
> BS08087.pep
MQLIKCLVIIQLSLLLVEESFAGRDFYKILNVKKNANTNEVKKAYRRLAK
ELHPDKNKDDPDASTKFQDLGAAYEVLSNPDKRKTYDRCGEECLKKEGMM
DHGGDPFSSFFGDFGFHFGGDGQQQDAPRGADIVMDLYVSLEELYSGNFV
EIVRNKPVTKPASGTRKCNCRQEMVTRNLGPGRFQMIQQTVCDECPNVKL
VNEERTLEIEVEQGMVDGQETRFVAEGEPHIDGEPGDLIVRVQQMPHPRF
LRKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWPGARIRK
KGEGMPNFENNNLTGNLYITFDVEFPKKDLTEEDKEALKKILDQSSINRI
YNGL*
BS08087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4164-PA | 354 | CG4164-PA | 1..354 | 1..354 | 1870 | 100 | Plus |
Droj2-PE | 403 | CG8863-PE | 7..336 | 26..327 | 445 | 36.5 | Plus |
Droj2-PD | 403 | CG8863-PD | 7..336 | 26..327 | 445 | 36.5 | Plus |
Droj2-PC | 403 | CG8863-PC | 7..336 | 26..327 | 445 | 36.5 | Plus |
Droj2-PB | 403 | CG8863-PB | 7..336 | 26..327 | 445 | 36.5 | Plus |