Clone BS08087 Report

Search the DGRC for BS08087

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG4164-RA
Protein status:BS08087.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08087.3prime Sequence

953 bp (846 high quality bases) assembled on 2006-01-06

> BS08087.3prime
ATGGTCTAGAAAGCTTTCACAGTCCATTGTATATGCGATTGATGGAGGAT
TGGTCGAGTATTTTCTTGAGCGCTTCCTTGTCCTCCTCCGTAAGATCCTT
CTTGGGGAACTCCACATCGAAGGTGATGTACAGGTTGCCGGTGAGGTTGT
TGTTCTCAAAGTTGGGCATGCCCTCGCCCTTCTTGCGGATTCTAGCGCCG
GGCCACGTTACCTTCTCTCTCGTGACGGGCACCAGGTGTCCATCAAGGTG
CTTGATCTCCATGGAGAAGCCGACAAGGGCATCCTGCAGACTGATGGTCA
CGTTCGTGTACAGATCATCATTCTTGCGCAGGAATCGCGGATGCGGCATT
TGTTGAACCCGCACAATGAGGTCGCCGGGCTCCCCATCGATATGTGGCTC
CCCCTCGGCCACGAACCTCGTCTCTTGGCCGTCGACCATGCCCTGTTCCA
CCTCGATCTCCAATGTGCGCTCCTCGTTGACTAGCTTCACGTTGGGACAC
TCGTCGCACACCGTCTGTTGGATCATCTGGAAGCGCCCGGGTCCAAGGTT
CCGGGTGACCATCTCCTGGCGGCAGTTGCATTTCCTGGTGCCTGAGGCGG
GTTTCGTTACAGGCTTGTTCCTCACAATTTCCACAAAGTTTCCGGAGTAT
AGCTCCTCCAGGGAAACGTACAAGTCCATTACGATATCGGCGCCTCGCGG
AGCATCTTGCTGCTGGCCATCACCACCGAAGTGAAAGCCGAAGTCCCCAA
AGAAGCTAGAGAACGGATCACCACCGTGATCCATCATGCCCTCCTTCTTG
AGGCATTCCTCGCCGCAGCGGTCGTAGGTCTTCCGTTTGTCCGGATTGGA
GAGGACTTCGTAGGCCGCTCCCANGTCCTGGAACTTTGTGGAGGCATCCG
GGTCGTCCTTGTTTCTATCCGGATGCAGCTCCTTTGGCAAACGGCGATAC
GCC

BS08087.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-PA 1065 CG4164-RA 129..1065 953..17 4566 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1488 CG4164-RA 283..1220 953..16 4619 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453390..454270 953..73 4334 99.4 Minus
2L 23513712 2L 454803..454929 199..73 605 98.4 Minus
2L 23513712 2L 454328..454386 74..16 295 100 Minus
2L 23513712 2L 454987..455045 74..16 295 100 Minus
Blast to na_te.dros performed 2015-01-31 15:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1348..1483 621..484 126 57.6 Minus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2230..2365 621..484 109 55.4 Minus

BS08087.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:15 Download gff for BS08087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 129..1065 17..953 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:13 Download gff for BS08087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 129..1065 17..953 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:13 Download gff for BS08087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 283..1220 16..953 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:28 Download gff for BS08087.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 283..1220 16..953 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:28 Download gff for BS08087.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 453390..454270 73..953 99 -> Minus
2L 454330..454386 16..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:13 Download gff for BS08087.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 453390..454270 73..953 99 -> Minus
arm_2L 454330..454386 16..72 100   Minus

BS08087.5prime Sequence

905 bp (811 high quality bases) assembled on 2006-01-06

> BS08087.5prime
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAGGTAACGTGGCCCGG
CGCTA

BS08087.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-PA 1065 CG4164-RA 1..889 17..905 4445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1488 CG4164-RA 151..1043 13..905 4450 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453258..454150 13..905 4450 99.9 Plus
Blast to na_te.dros performed 2015-02-11 23:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1348..1483 477..614 126 57.6 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2230..2365 477..614 109 55.4 Plus

BS08087.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:16 Download gff for BS08087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:14 Download gff for BS08087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:27 Download gff for BS08087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 151..1042 13..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:27 Download gff for BS08087.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 151..1042 13..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:27 Download gff for BS08087.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 453258..454149 13..904 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:27 Download gff for BS08087.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 453258..454149 13..904 99   Plus

BS08087.complete Sequence

1097 bp (1097 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636097

> BS08087.complete
GAAGTTATCAGTCGACATGCAGCTTATCAAGTGCTTGGTTATAATTCAGC
TGTCCCTCTTGCTGGTGGAGGAGTCATTTGCCGGCCGGGACTTCTACAAA
ATACTGAACGTAAAGAAAAACGCCAACACGAACGAAGTGAAGAAGGCGTA
TCGCCGTTTGGCCAAGGAGCTGCATCCGGATAAGAACAAGGACGACCCGG
ATGCCTCCACAAAGTTCCAGGACCTGGGAGCGGCCTACGAAGTCCTCTCC
AATCCGGACAAACGGAAGACCTACGACCGCTGCGGCGAGGAATGCCTCAA
GAAGGAGGGCATGATGGATCACGGTGGTGATCCGTTCTCTAGCTTCTTTG
GGGACTTCGGCTTTCACTTCGGTGGTGATGGCCAGCAGCAAGATGCTCCG
CGAGGCGCCGATATCGTAATGGACTTGTACGTTTCCCTGGAGGAGCTATA
CTCCGGAAACTTTGTGGAAATTGTGAGGAACAAGCCTGTAACGAAACCCG
CCTCAGGCACCAGGAAATGCAACTGCCGCCAGGAGATGGTCACCCGGAAC
CTTGGACCCGGGCGCTTCCAGATGATCCAACAGACGGTGTGCGACGAGTG
TCCCAACGTGAAGCTAGTCAACGAGGAGCGCACATTGGAGATCGAGGTGG
AACAGGGCATGGTCGACGGCCAAGAGACGAGGTTCGTGGCCGAGGGGGAG
CCACATATCGATGGGGAGCCCGGCGACCTCATTGTGCGGGTTCAACAAAT
GCCGCATCCGCGATTCCTGCGCAAGAATGATGATCTGTACACGAACGTGA
CCATCAGTCTGCAGGATGCCCTTGTCGGCTTCTCCATGGAGATCAAGCAC
CTTGATGGACACCTGGTGCCCGTCACGAGAGAGAAGGTAACGTGGCCCGG
CGCTAGAATCCGCAAGAAGGGCGAGGGCATGCCCAACTTTGAGAACAACA
ACCTCACCGGCAACCTGTACATCACCTTCGATGTGGAGTTCCCCAAGAAG
GATCTTACGGAGGAGGACAAGGAAGCGCTCAAGAAAATACTCGACCAATC
CTCCATCAATCGCATATACAATGGACTGTGAAAGCTTTCTAGACCAT

BS08087.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1065 CG4164-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-RA 1488 CG4164-RA 151..1220 13..1082 5335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 453258..454270 13..1025 5050 99.9 Plus
2L 23513712 2L 454803..454929 899..1025 605 98.4 Plus
2L 23513712 2L 454328..454386 1024..1082 295 100 Plus
2L 23513712 2L 454987..455045 1024..1082 295 100 Plus
Blast to na_te.dros performed 2014-11-27 08:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 1348..1483 477..614 126 57.6 Plus

BS08087.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:24 Download gff for BS08087.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 1..1065 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:34 Download gff for BS08087.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 148..1217 13..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:33 Download gff for BS08087.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 155..1218 17..1080 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:24 Download gff for BS08087.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 148..1217 13..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:29 Download gff for BS08087.complete
Subject Subject Range Query Range Percent Splice Strand
CG4164-RA 155..1218 17..1080 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:29 Download gff for BS08087.complete
Subject Subject Range Query Range Percent Splice Strand
2L 453262..454270 17..1025 100 -> Plus
2L 454330..454384 1026..1080 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:33 Download gff for BS08087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 453262..454270 17..1025 100 -> Plus
arm_2L 454330..454384 1026..1080 100   Plus

BS08087.pep Sequence

Translation from 16 to 1080

> BS08087.pep
MQLIKCLVIIQLSLLLVEESFAGRDFYKILNVKKNANTNEVKKAYRRLAK
ELHPDKNKDDPDASTKFQDLGAAYEVLSNPDKRKTYDRCGEECLKKEGMM
DHGGDPFSSFFGDFGFHFGGDGQQQDAPRGADIVMDLYVSLEELYSGNFV
EIVRNKPVTKPASGTRKCNCRQEMVTRNLGPGRFQMIQQTVCDECPNVKL
VNEERTLEIEVEQGMVDGQETRFVAEGEPHIDGEPGDLIVRVQQMPHPRF
LRKNDDLYTNVTISLQDALVGFSMEIKHLDGHLVPVTREKVTWPGARIRK
KGEGMPNFENNNLTGNLYITFDVEFPKKDLTEEDKEALKKILDQSSINRI
YNGL*

BS08087.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4164-PA 354 CG4164-PA 1..354 1..354 1870 100 Plus
Droj2-PE 403 CG8863-PE 7..336 26..327 445 36.5 Plus
Droj2-PD 403 CG8863-PD 7..336 26..327 445 36.5 Plus
Droj2-PC 403 CG8863-PC 7..336 26..327 445 36.5 Plus
Droj2-PB 403 CG8863-PB 7..336 26..327 445 36.5 Plus