Clone Sequence Records
BS08093.3prime Sequence
946 bp (764 high quality bases) assembled on 2006-01-06
> BS08093.3prime
ATGGTCTAGAAAGCTTCTACAGCCGCCACAGGCGACTGCTGTTGCCTCCG
ATGGCGCCCTCAGCCTCGCCGCGCAGCTTGTTGTCGTCGGTGCGCCAGAC
GAAGGGCTCCAGGCGGTCCTCGTCGTCCAGGAAGTTATTGATCGCCTCCA
GACTGGCTATGTTCTCGTGCAGCAGCGAGTTGCATCTGCTCAGCTGATGC
GATATGCTCCGAATCTTGGCGAATTGCTCGGCGTACGAGGCGTACGTCTT
CTGCATGTCCACGAATCCGGCAAAGAGGGTGGTGATCGAGTTGCTCACCA
CCTTGGTACGTTCCACGAGGTGATTCTGTTCGCTGGCCACATAGCTGGCG
CACAGATTAAGATGTGTTTGCATGCGGGTACATATGTTGATCAAATGCTG
CGAGTTTAGTCGCTCCAGAATCTCTGCATCTCGTGTATTGGTCGCCGACG
TGATGGATTCACGGAGCACGGGCAGAAACTGCGGTATATTGCGCAATCGT
GCCAAGTCCATGTCCACATCCTCGCCAGCATCGATGGCACCGGGACGCAC
AATCACTATATTATGACTAGAGGCCGTGGACTGTGGTCGCTTCGGTTTCA
CGGCGCTGGTGAGTCCACTCGGATGTGACTTCCTGGCCGCCGCACGGCTG
GCGCTGCTCTGCTGGAGCATATGCGCCGGCTTGCTGCGTATCTTGGGCGA
ATCACCGATTGGCCGATCTGTATAGGACACATATGGCAGGTCGGAGCAGA
CGCTAAGCGGCGGCGAAAGCGGTCTGCTCAGTTCGGAGCCGCCGGGCGAA
GCGGCCTCGGCGATGATCTGCTTGCTAGCTATCACAATGCTAGCTGGGCC
CACTCCAGCTCCCGGGCCCACCACTGTTCCGCCTGCTCCTCCTGTCGTCT
GCTGGCGATGACCAACTCCGCGTCGTTTGTTGGCCGCCGCCGTGGC
BS08093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11802-PA | 1050 | CG11802-RA | 121..1050 | 946..17 | 4625 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11802-RA | 1481 | CG11802-RA | 354..1283 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11871497..11872426 | 17..946 | 4635 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:27:51 has no hits.
BS08093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:23 Download gff for
BS08093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-PA | 121..1050 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:25 Download gff for
BS08093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-PA | 121..1050 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:32:35 Download gff for
BS08093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 354..1283 | 17..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:49:57 Download gff for
BS08093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 354..1283 | 17..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:49:57 Download gff for
BS08093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11871497..11872426 | 17..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:32:35 Download gff for
BS08093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11765530..11766459 | 17..946 | 99 | | Plus |
BS08093.5prime Sequence
959 bp (776 high quality bases) assembled on 2006-01-06
> BS08093.5prime
GAAGTTATCAGTCGACATGGGCGCCGAGCATTCGCAGCAGCGGGCTGAGG
CCGATGGCCACGAGATCTTCGACGGACGCCAGCCACCAGGAGCGGGCACT
GGATCCCTCGGCGATGGCAGCTCCATGATGCTGGCGGCCACGGCGGCGGC
CAACAAACGACGCGGAGTTGGTCATCGCCAGCAGACGACAGGAGGAGCAG
GCGGAACAGTGGTGGGCCCGGGAGCTGGAGTGGGCCCAGCTAGCATTGTG
ATAGCTAGCAAGCAGATCATCGCCGAGGCCGCTTCGCCCGGCGGCTCCGA
ACTGAGCAGACCGCCTTCGCCGCCGCTTAGCGTCTGCTCCGACCTGCCAT
ATGTGTCCTATACAGATCGGCCAATCGGTGATTCGCCCAAGATACGCAGC
AAGCCGGCGCATATGCTCCAGCAGAGCAGCGCCAGCCGTGCGGCGGCCAG
GAAGTCACATCCGAGTGGACTCACCAGCGCCGTGAAACCGAAGCGACCAC
AGTCCACGGCCTCTAGTCATAATATAGTGATTGTGCGTCCCGGTGCCATC
GATGCTGGCGAGGATGTGGACATGGACTTGGCACGATTGCGCAATATACC
GCAGTTTCTGCCCGTGCTCCGTGAATCCATCACGTCGGCGACCAATACAC
GAGATGCAGAGATTCTGGAGCGACTAAACTCGCAGCATTTGATCAACATA
TGTACCCGCATGCAAACACATCTTAATCTGTGCGCCAGCTATGTGGCCAG
CGAACAGAATCACCTCGTGGAACGTACCAAGGTGGTGAGCAACTCGATCA
CCACCCTCTTTGCCGGATTCGTGGACATGCAGAAGACGTACGCCTCGTAC
GCCGAGCAATTCGCCAAGATTCGGAGCATATCGCATCAGCTGAGCAGATG
CAACTCGCTGCTGCACGAGAACATAGCCAGTCTGGAGGCGATCAATAACT
TCCTGGACG
BS08093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11802-PA | 1050 | CG11802-RA | 1..943 | 17..959 | 4715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11802-RA | 1481 | CG11802-RA | 234..1176 | 17..959 | 4715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11871604..11872546 | 959..17 | 4715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:44:33 has no hits.
BS08093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:24 Download gff for
BS08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-PA | 1..943 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:27 Download gff for
BS08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-PA | 1..943 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:17 Download gff for
BS08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 234..1176 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:11 Download gff for
BS08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 234..1176 | 17..959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:11 Download gff for
BS08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11871604..11872546 | 17..959 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:17 Download gff for
BS08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11765637..11766579 | 17..959 | 100 | | Minus |
BS08093.complete Sequence
1082 bp (1082 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636098
> BS08093.complete
GAAGTTATCAGTCGACATGGGCGCCGAGCATTCGCAGCAGCGGGCTGAGG
CCGATGGCCACGAGATCTTCGACGGACGCCAGCCACCAGGAGCGGGCACT
GGATCCCTCGGCGATGGCAGCTCCATGATGCTGGCGGCCACGGCGGCGGC
CAACAAACGACGCGGAGTTGGTCATCGCCAGCAGACGACAGGAGGAGCAG
GCGGAACAGTGGTGGGCCCGGGAGCTGGAGTGGGCCCAGCTAGCATTGTG
ATAGCTAGCAAGCAGATCATCGCCGAGGCCGCTTCGCCCGGCGGCTCCGA
ACTGAGCAGACCGCCTTCGCCGCCGCTTAGCGTCTGCTCCGACCTGCCAT
ATGTGTCCTATACAGATCGGCCAATCGGTGATTCGCCCAAGATACGCAGC
AAGCCGGCGCATATGCTCCAGCAGAGCAGCGCCAGCCGTGCGGCGGCCAG
GAAGTCACATCCGAGTGGACTCACCAGCGCCGTGAAACCGAAGCGACCAC
AGTCCACGGCCTCTAGTCATAATATAGTGATTGTGCGTCCCGGTGCCATC
GATGCTGGCGAGGATGTGGACATGGACTTGGCACGATTGCGCAATATACC
GCAGTTTCTGCCCGTGCTCCGTGAATCCATCACGTCGGCGACCAATACAC
GAGATGCAGAGATTCTGGAGCGACTAAACTCGCAGCATTTGATCAACATA
TGTACCCGCATGCAAACACATCTTAATCTGTGCGCCAGCTATGTGGCCAG
CGAACAGAATCACCTCGTGGAACGTACCAAGGTGGTGAGCAACTCGATCA
CCACCCTCTTTGCCGGATTCGTGGACATGCAGAAGACGTACGCCTCGTAC
GCCGAGCAATTCGCCAAGATTCGGAGCATATCGCATCAGCTGAGCAGATG
CAACTCGCTGCTGCACGAGAACATAGCCAGTCTGGAGGCGATCAATAACT
TCCTGGACGACGAGGACCGCCTGGAGCCCTTCGTCTGGCGCACCGACGAC
AACAAGCTGCGCGGCGAGGCTGAGGGCGCCATCGGAGGCAACAGCAGTCG
CCTGTGGCGGCTGTAGAAGCTTTCTAGACCAT
BS08093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11802-RA | 1050 | CG11802-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11802-RA | 1481 | CG11802-RA | 234..1283 | 17..1066 | 5250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11871497..11872546 | 1066..17 | 5250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:18:50 has no hits.
BS08093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:25 Download gff for
BS08093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:35 Download gff for
BS08093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 233..1282 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:45 Download gff for
BS08093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 234..1283 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:25 Download gff for
BS08093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 233..1282 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:14 Download gff for
BS08093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11802-RA | 234..1283 | 17..1066 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:14 Download gff for
BS08093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11871497..11872546 | 17..1066 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:45 Download gff for
BS08093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11765530..11766579 | 17..1066 | 100 | | Minus |
BS08093.pep Sequence
Translation from 16 to 1065
> BS08093.pep
MGAEHSQQRAEADGHEIFDGRQPPGAGTGSLGDGSSMMLAATAAANKRRG
VGHRQQTTGGAGGTVVGPGAGVGPASIVIASKQIIAEAASPGGSELSRPP
SPPLSVCSDLPYVSYTDRPIGDSPKIRSKPAHMLQQSSASRAAARKSHPS
GLTSAVKPKRPQSTASSHNIVIVRPGAIDAGEDVDMDLARLRNIPQFLPV
LRESITSATNTRDAEILERLNSQHLINICTRMQTHLNLCASYVASEQNHL
VERTKVVSNSITTLFAGFVDMQKTYASYAEQFAKIRSISHQLSRCNSLLH
ENIASLEAINNFLDDEDRLEPFVWRTDDNKLRGEAEGAIGGNSSRLWRL*
BS08093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11802-PA | 349 | CG11802-PA | 1..349 | 1..349 | 1781 | 100 | Plus |
