Clone Sequence Records
BS08094.3prime Sequence
833 bp (801 high quality bases) assembled on 2006-01-06
> BS08094.3prime
ATGGTCTAGAAAGCTTCTATTTGACAACTGCATCGGCTGGCCTGGATACA
TCGCTGGAGTTGTCGTCCTCCTCCATTTGATTTCCATCTAGCAGGCGCTG
ACGCTCCTCCTCGTTGGCATGACCATTCAGGTGGATCGGTGATCTAGACC
TGGAGCGGGTGCGGCTCCTCTCGTGCCGCTCGGCATGCCCATTGGCTATG
TTCAGGCCGGCCACGCCCATTTCGTGACCATCGCTGCTGGTCGAGGAAGT
GGTGGACGTGGTGCTCGACGTGGTGCTGCTGCTGTCGCTTTCGCTGTCCT
CGCTGGTGGAGTCCATGGGTGTGGGTTGTGGCTGCTGGGGAGGCTGTTGT
CTAGCCTGCAGCTCGCAAGCTGAACTGGGAGTGGGCGCCACCGCTGAGGG
CGGGGAAGCTGCGGCCGCTGCTGCTGCCGCTGGTCCAGCTGTCGCGGAAC
ACGTGCGCAAGAGGTGGGTGCGCAGAAATTGATTCTCACGTGATAGTTGG
CGAATCTTATCATCCTGCGCTCGTAATTTGGCTCCAAACTCCTTGGATAT
GTTCTGGGCCTTCGAATATCGATCTTCGATTTGCATGCACTCCTGGATGA
GCTCCTGCTTGCTCATCGTCTCCAAACGTTCGAGCCGCGCTCGCTCGTAG
ACATCGGAGAACTCCTTGGAAAGGAAGAGCACCTGATCTTCGGTCTGGGA
GCCAAAACAGTTGTCGTCGGAGTCATCTTTGTGCAGCTCCGACATGTGTT
CCTCCATTAGGAAGCGGTTCGTGTTGTACGGAACGAGCAAGGAGCGCGAA
CGAACCAGCTTGGTTCTGCTATTCTGTCGTTGA
BS08094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3508-PB | 1083 | CG3508-RB | 267..1083 | 833..17 | 4085 | 100 | Minus |
CG3508-PA | 1050 | CG3508-RA | 234..1050 | 833..17 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1515 | CG3508-RA | 357..1175 | 833..15 | 4095 | 100 | Minus |
Hexim-RB | 1548 | CG3508-RB | 390..1208 | 833..15 | 4095 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14660375..14660837 | 477..15 | 2315 | 100 | Minus |
3R | 32079331 | 3R | 14659955..14660317 | 833..471 | 1785 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-12 12:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 447..230 | 197 | 56.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 349..271 | 145 | 67.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 432..315 | 138 | 59.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 363..259 | 121 | 59.6 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 272..421 | 114 | 57 | Plus |
BS08094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:25 Download gff for
BS08094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 235..1050 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:28 Download gff for
BS08094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 235..1050 | 17..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:48:38 Download gff for
BS08094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RB | 388..1205 | 15..832 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:35 Download gff for
BS08094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RB | 391..1208 | 15..832 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:35 Download gff for
BS08094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14659956..14660310 | 478..832 | 100 | -> | Minus |
3R | 14660375..14660837 | 15..477 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:48:38 Download gff for
BS08094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10485678..10486032 | 478..832 | 100 | -> | Minus |
arm_3R | 10486097..10486559 | 15..477 | 100 | | Minus |
BS08094.5prime Sequence
884 bp (790 high quality bases) assembled on 2006-01-06
> BS08094.5prime
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACA
BS08094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3508-PA | 1050 | CG3508-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
CG3508-PB | 1083 | CG3508-RB | 55..901 | 38..884 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1515 | CG3508-RA | 122..991 | 15..884 | 4350 | 100 | Plus |
Hexim-RB | 1548 | CG3508-RB | 173..1024 | 33..884 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14659743..14660317 | 38..612 | 2845 | 99.7 | Plus |
3R | 32079331 | 3R | 14660375..14660653 | 606..884 | 1395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 636..853 | 197 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 734..812 | 145 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 651..768 | 138 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 720..824 | 121 | 59.6 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 811..662 | 114 | 57 | Minus |
BS08094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:26 Download gff for
BS08094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:30 Download gff for
BS08094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:26:42 Download gff for
BS08094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 119..987 | 15..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:10 Download gff for
BS08094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 122..990 | 15..883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:10 Download gff for
BS08094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14660375..14660652 | 606..883 | 100 | | Plus |
3R | 14659559..14659582 | 15..38 | 100 | -> | Plus |
3R | 14659744..14660310 | 39..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:26:42 Download gff for
BS08094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10485281..10485304 | 15..38 | 100 | -> | Plus |
arm_3R | 10485466..10486032 | 39..605 | 100 | -> | Plus |
arm_3R | 10486097..10486374 | 606..883 | 100 | | Plus |
BS08094.complete Sequence
1082 bp (1082 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636099
> BS08094.complete
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACATAGCCAATGGGCATGC
CGAGCGGCACGAGAGGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCC
ACCTGAATGGTCATGCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGA
AATCAAATGGAGGAGGACGACAACTCCAGCGATGTATCCAGGCCAGCCGA
TGCAGTTGTCAAATAGAAGCTTTCTAGACCAT
BS08094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1050 | CG3508-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Hexim-RB | 1083 | CG3508-PB | 50..1083 | 33..1066 | 5155 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-RA | 1515 | CG3508-RA | 122..1175 | 15..1068 | 5270 | 100 | Plus |
Hexim-RB | 1548 | CG3508-RB | 173..1208 | 33..1068 | 5165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14659743..14660317 | 38..612 | 2845 | 99.7 | Plus |
3R | 32079331 | 3R | 14660375..14660837 | 606..1068 | 2315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2541 | 636..853 | 197 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 734..812 | 145 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2551 | 651..768 | 138 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 720..824 | 121 | 59.6 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 811..662 | 114 | 57 | Minus |
BS08094.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:26 Download gff for
BS08094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:37 Download gff for
BS08094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-RA | 119..1172 | 15..1068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:56 Download gff for
BS08094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 121..1164 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:26 Download gff for
BS08094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3508-RA | 119..1172 | 15..1068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:25 Download gff for
BS08094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hexim-RA | 124..1167 | 17..1060 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:25 Download gff for
BS08094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14659561..14659582 | 17..38 | 100 | -> | Plus |
3R | 14659744..14660310 | 39..605 | 100 | -> | Plus |
3R | 14660375..14660829 | 606..1060 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:56 Download gff for
BS08094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10485283..10485304 | 17..38 | 100 | -> | Plus |
arm_3R | 10485466..10486032 | 39..605 | 100 | -> | Plus |
arm_3R | 10486097..10486551 | 606..1060 | 100 | | Plus |
BS08094.pep Sequence
Translation from 16 to 1065
> BS08094.pep
MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK
MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN
RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET
MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT
HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP
MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER
SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVK*
BS08094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hexim-PA | 349 | CG3508-PA | 1..349 | 1..349 | 1791 | 100 | Plus |
Hexim-PB | 360 | CG3508-PB | 1..360 | 1..349 | 1769 | 96.9 | Plus |