Clone BS08094 Report

Search the DGRC for BS08094

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:80
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptHexim-RA
Protein status:BS08094.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08094.3prime Sequence

833 bp (801 high quality bases) assembled on 2006-01-06

> BS08094.3prime
ATGGTCTAGAAAGCTTCTATTTGACAACTGCATCGGCTGGCCTGGATACA
TCGCTGGAGTTGTCGTCCTCCTCCATTTGATTTCCATCTAGCAGGCGCTG
ACGCTCCTCCTCGTTGGCATGACCATTCAGGTGGATCGGTGATCTAGACC
TGGAGCGGGTGCGGCTCCTCTCGTGCCGCTCGGCATGCCCATTGGCTATG
TTCAGGCCGGCCACGCCCATTTCGTGACCATCGCTGCTGGTCGAGGAAGT
GGTGGACGTGGTGCTCGACGTGGTGCTGCTGCTGTCGCTTTCGCTGTCCT
CGCTGGTGGAGTCCATGGGTGTGGGTTGTGGCTGCTGGGGAGGCTGTTGT
CTAGCCTGCAGCTCGCAAGCTGAACTGGGAGTGGGCGCCACCGCTGAGGG
CGGGGAAGCTGCGGCCGCTGCTGCTGCCGCTGGTCCAGCTGTCGCGGAAC
ACGTGCGCAAGAGGTGGGTGCGCAGAAATTGATTCTCACGTGATAGTTGG
CGAATCTTATCATCCTGCGCTCGTAATTTGGCTCCAAACTCCTTGGATAT
GTTCTGGGCCTTCGAATATCGATCTTCGATTTGCATGCACTCCTGGATGA
GCTCCTGCTTGCTCATCGTCTCCAAACGTTCGAGCCGCGCTCGCTCGTAG
ACATCGGAGAACTCCTTGGAAAGGAAGAGCACCTGATCTTCGGTCTGGGA
GCCAAAACAGTTGTCGTCGGAGTCATCTTTGTGCAGCTCCGACATGTGTT
CCTCCATTAGGAAGCGGTTCGTGTTGTACGGAACGAGCAAGGAGCGCGAA
CGAACCAGCTTGGTTCTGCTATTCTGTCGTTGA

BS08094.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3508-PB 1083 CG3508-RB 267..1083 833..17 4085 100 Minus
CG3508-PA 1050 CG3508-RA 234..1050 833..17 4085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1515 CG3508-RA 357..1175 833..15 4095 100 Minus
Hexim-RB 1548 CG3508-RB 390..1208 833..15 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14660375..14660837 477..15 2315 100 Minus
3R 32079331 3R 14659955..14660317 833..471 1785 99.4 Minus
Blast to na_te.dros performed 2015-02-12 12:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 447..230 197 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 349..271 145 67.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 432..315 138 59.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 363..259 121 59.6 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 272..421 114 57 Plus

BS08094.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:25 Download gff for BS08094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 235..1050 17..832 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:28 Download gff for BS08094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 235..1050 17..832 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:48:38 Download gff for BS08094.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RB 388..1205 15..832 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:35 Download gff for BS08094.3prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RB 391..1208 15..832 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:35 Download gff for BS08094.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14659956..14660310 478..832 100 -> Minus
3R 14660375..14660837 15..477 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:48:38 Download gff for BS08094.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485678..10486032 478..832 100 -> Minus
arm_3R 10486097..10486559 15..477 100   Minus

BS08094.5prime Sequence

884 bp (790 high quality bases) assembled on 2006-01-06

> BS08094.5prime
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACA

BS08094.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3508-PA 1050 CG3508-RA 1..868 17..884 4340 100 Plus
CG3508-PB 1083 CG3508-RB 55..901 38..884 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1515 CG3508-RA 122..991 15..884 4350 100 Plus
Hexim-RB 1548 CG3508-RB 173..1024 33..884 4245 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14659743..14660317 38..612 2845 99.7 Plus
3R 32079331 3R 14660375..14660653 606..884 1395 100 Plus
Blast to na_te.dros performed 2015-02-10 23:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 636..853 197 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 734..812 145 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 651..768 138 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 720..824 121 59.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 811..662 114 57 Minus

BS08094.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:26 Download gff for BS08094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:30 Download gff for BS08094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3508-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:26:42 Download gff for BS08094.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 119..987 15..883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:10 Download gff for BS08094.5prime
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 122..990 15..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:10 Download gff for BS08094.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14660375..14660652 606..883 100   Plus
3R 14659559..14659582 15..38 100 -> Plus
3R 14659744..14660310 39..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:26:42 Download gff for BS08094.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485281..10485304 15..38 100 -> Plus
arm_3R 10485466..10486032 39..605 100 -> Plus
arm_3R 10486097..10486374 606..883 100   Plus

BS08094.complete Sequence

1082 bp (1082 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636099

> BS08094.complete
GAAGTTATCAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCC
AACAACGACCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGC
GGTGTCGCTGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCG
GGGAAAAAAATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGC
AGTGGAAACTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAAT
CAACGACAGAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGT
TCCGTACAACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGC
ACAAAGATGACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAG
GTGCTCTTCCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCT
CGAACGTTTGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGC
AAATCGAAGATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGA
GCCAAATTACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAA
TCAATTTCTGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGAC
CAGCGGCAGCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCC
ACTCCCAGTTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCA
GCCACAACCCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACA
GCAGCAGCACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGC
GATGGTCACGAAATGGGCGTGGCCGGCCTGAACATAGCCAATGGGCATGC
CGAGCGGCACGAGAGGAGCCGCACCCGCTCCAGGTCTAGATCACCGATCC
ACCTGAATGGTCATGCCAACGAGGAGGAGCGTCAGCGCCTGCTAGATGGA
AATCAAATGGAGGAGGACGACAACTCCAGCGATGTATCCAGGCCAGCCGA
TGCAGTTGTCAAATAGAAGCTTTCTAGACCAT

BS08094.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1050 CG3508-PA 1..1050 17..1066 5250 100 Plus
Hexim-RB 1083 CG3508-PB 50..1083 33..1066 5155 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-RA 1515 CG3508-RA 122..1175 15..1068 5270 100 Plus
Hexim-RB 1548 CG3508-RB 173..1208 33..1068 5165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14659743..14660317 38..612 2845 99.7 Plus
3R 32079331 3R 14660375..14660837 606..1068 2315 100 Plus
Blast to na_te.dros performed 2014-11-28 01:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2541 636..853 197 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6822 734..812 145 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2551 651..768 138 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6870 720..824 121 59.6 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..784 811..662 114 57 Minus

BS08094.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:26 Download gff for BS08094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 1..1050 17..1066 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:37 Download gff for BS08094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 119..1172 15..1068 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:56 Download gff for BS08094.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 121..1164 17..1060 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:26 Download gff for BS08094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3508-RA 119..1172 15..1068 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:25 Download gff for BS08094.complete
Subject Subject Range Query Range Percent Splice Strand
Hexim-RA 124..1167 17..1060 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:25 Download gff for BS08094.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14659561..14659582 17..38 100 -> Plus
3R 14659744..14660310 39..605 100 -> Plus
3R 14660375..14660829 606..1060 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:56 Download gff for BS08094.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10485283..10485304 17..38 100 -> Plus
arm_3R 10485466..10486032 39..605 100 -> Plus
arm_3R 10486097..10486551 606..1060 100   Plus

BS08094.pep Sequence

Translation from 16 to 1065

> BS08094.pep
MAEAVKNESGSQQRPLDSGGGGGASGGGGVAVGGGSGMPKRKHRRGKKSK
MQPKKTKNHYPQWKLDMSTGAGATLEGNQRQNSRTKLVRSRSLLVPYNTN
RFLMEEHMSELHKDDSDDNCFGSQTEDQVLFLSKEFSDVYERARLERLET
MSKQELIQECMQIEDRYSKAQNISKEFGAKLRAQDDKIRQLSRENQFLRT
HLLRTCSATAGPAAAAAAAASPPSAVAPTPSSACELQARQQPPQQPQPTP
MDSTSEDSESDSSSTTSSTTSTTSSTSSDGHEMGVAGLNIANGHAERHER
SRTRSRSRSPIHLNGHANEEERQRLLDGNQMEEDDNSSDVSRPADAVVK*

BS08094.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hexim-PA 349 CG3508-PA 1..349 1..349 1791 100 Plus
Hexim-PB 360 CG3508-PB 1..360 1..349 1769 96.9 Plus