Clone Sequence Records
BS08101.3prime Sequence
915 bp (862 high quality bases) assembled on 2006-01-06
> BS08101.3prime
ATGGTCTAGAAAGCTTCTAGAGGAAGAAGCGACGTCGCGACTCCATGGCG
TGCCGTTTGTTGCTGATTATCCAGGCATAGTCACCGGTCTTGCTGTCGAA
TGTGCCCTCCTGCAGGGAACGTAGTTTCAGGGTGAACCGCGGCCCCAGTT
CGCGCAGCTTTACGCGTTTTCCCTCTTTGGTGAACTCGTAGCGGTGGTGA
CGGAAGAATATGTAATCTCGCTGATTGTGGAACGTCACCGCTCGGCGGCC
GCGGAACTCGGGATCGTGATGGAAGAGGGCACCCAGCATGCGGCCCACGG
TCAGACCCAAACGTGTGGTAAAATTGTTCAGGATCACTTCGGGCCTGTGC
TTGGTTATCTCCTTGTGATCGCGCTTTATGTCCGAGGTGAGCTTCACGTT
GGACAGCTTGAAGTGGGCAGTGGGACCATTGGGCAGATGAATGACCAGCA
GCCCATTGGGCTTTCTGCGATCTTCGTTAACGATCACGACGTCTGTGAAC
TCCTCGCGCTCGGCGCTTTTGCATATCTTCTTCACCGACGACTTGTTGCG
AATCTTAACCAGGGCGTTGGGGAATATGCGCGAAAGCTCCAGTCCAAACT
TACGCGTCTTGGTCACCGGATTGTCAGCAAAAGTGATCAGCACCTTTGGC
TCGTACGAACGTTCGAAGTACGAGCTGAAATCGTCCAGTTGGAGTTCCTT
TTGCAACTCCTCGTTGTCGGAATCGTTCAGATTGGCCACCTCTGTTTGGT
CCTTCTCTCGCAGGCTCTCTATGGTGTGACCAGGATTGGCGGGTACACCA
GCCTTCCGTCGGGCACGGCGCTCCTGCATTTTTTTCTTGTGCTTCTCCTT
CTTCATTTTTTTGTACAACGCCAAACGCTGCTCCTTGTTGCGCATCCAGC
TGAGGGGATTCAAAC
BS08101.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-PA | 1185 | CG6712-RA | 288..1185 | 914..17 | 4490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1336 | CG6712-RA | 379..1276 | 914..17 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12095236..12096133 | 17..914 | 4490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 07:32:42 has no hits.
BS08101.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:32 Download gff for
BS08101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 286..1185 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:37 Download gff for
BS08101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 286..1185 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:15:32 Download gff for
BS08101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 377..1285 | 9..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:44:45 Download gff for
BS08101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 377..1285 | 9..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:44:45 Download gff for
BS08101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12095227..12096133 | 9..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:15:32 Download gff for
BS08101.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12095227..12096133 | 9..915 | 99 | | Plus |
BS08101.5prime Sequence
857 bp (804 high quality bases) assembled on 2006-01-06
> BS08101.5prime
GAAGTTATCAGTCGACATGATAAAAATTAAGCGAAAAACAGCCCCTCCGC
CCGTGGAACAGGACTCGGACAGCGATTCCAGCTTTGACGAGGAGGAGCCA
CAGGATTTGGAAGTCCAGGAGGGGCCAGTCACTGATAGCAGCGATGAAGA
AGCCGCCTCCAGCAGCAAAAAAACGGCCAAACAAGGGGAAGCCAGTGAGG
ATTTAAAGGAAGAGGATGATGACGACGATGAGGAGGAGAATGACGACGAC
GACGAAGAAGAGGATGATGACGACGACGACGACAAGAAGACACGAATTCC
TGTTTTGAATCCCCTCAGCTGGATGCGCAACAAGGAGCAGCGTTTGGCGT
TGTACAAAAAAATGAAGAAGGAGAAGCACAAGAAAAAAATGCAGGAGCGC
CGTGCCCGACGGAAGGCTGGTGTACCCGCCAATCCTGGTCACACCATAGA
GAGCCTGCGAGAGAAGGACCAAACAGAGGTGGCCAATCTGAACGATTCCG
ACAACGAGGAGTTGCAAAAGGAACTCCAACTGGACGATTTCAGCTCGTAC
TTCGAACGTTCGTACGAGCCAAAGGTGCTGATCACTTTTGCTGACAATCC
GGTGACCAAGACGCGTAAGTTTGGACTGGAGCTTTCGCGCATATTCCCCA
ACGCCCTGGTTAAGATTCGCAACAAGTCGTCGGTGAAGAAGATATGCAAA
AGCGCCGAGCGCGAGGAGTTCACAGACGTCGTGATCGTTAACGAAGATCG
CAGAAAGCCCAATGGGCTGCTGGTCATTCATCTGCCCAATGGTCCCACTG
CCCACTTNCAGCTGTCCAACGTGAAGCTCACCTCGGACATAAAGCGCGAT
CACAAGG
BS08101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-PA | 1185 | CG6712-RA | 1..841 | 17..857 | 4161 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1336 | CG6712-RA | 92..932 | 17..857 | 4179 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12095580..12096420 | 857..17 | 4179 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-12 05:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom1 | 410 | Tom1 DMTOM1_LTR 410bp | 54..132 | 379..302 | 109 | 60.8 | Minus |
BS08101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:33 Download gff for
BS08101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:38 Download gff for
BS08101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:58:27 Download gff for
BS08101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..932 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:23 Download gff for
BS08101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..932 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:23 Download gff for
BS08101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12095580..12096420 | 17..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:58:27 Download gff for
BS08101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12095580..12096420 | 17..857 | 99 | | Minus |
BS08101.complete Sequence
1217 bp (1217 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636101
> BS08101.complete
GAAGTTATCAGTCGACATGATAAAAATTAAGCGAAAAACAGCCCCTCCGC
CCGTGGAACAGGACTCGGACAGCGATTCCAGCTTTGACGAGGAGGAGCCA
CAGGATTTGGAAGTCCAGGAGGGGCCAGTCACTGATAGCAGCGATGAAGA
AGCCGCCTCCAGCAGCAAAAAAACGGCCAAACAAGGGGAAGCCAGTGAGG
ATTTAAAGGAAGAGGATGATGACGACGATGAGGAGGAGAATGACGACGAC
GACGAAGAAGAGGATGATGACGACGACGACGACAAGAAGACACGAATTCC
TGTTTTGAATCCCCTCAGCTGGATGCGCAACAAGGAGCAGCGTTTGGCGT
TGTACAAAAAAATGAAGAAGGAGAAGCACAAGAAAAAAATGCAGGAGCGC
CGTGCCCGACGGAAGGCTGGTGTACCCGCCAATCCTGGTCACACCATAGA
GAGCCTGCGAGAGAAGGACCAAACAGAGGTGGCCAATCTGAACGATTCCG
ACAACGAGGAGTTGCAAAAGGAACTCCAACTGGACGATTTCAGCTCGTAC
TTCGAACGTTCGTACGAGCCAAAGGTGCTGATCACTTTTGCTGACAATCC
GGTGACCAAGACGCGTAAGTTTGGACTGGAGCTTTCGCGCATATTCCCCA
ACGCCCTGGTTAAGATTCGCAACAAGTCGTCGGTGAAGAAGATATGCAAA
AGCGCCGAGCGCGAGGAGTTCACAGACGTCGTGATCGTTAACGAAGATCG
CAGAAAGCCCAATGGGCTGCTGGTCATTCATCTGCCCAATGGTCCCACTG
CCCACTTCAAGCTGTCCAACGTGAAGCTCACCTCGGACATAAAGCGCGAT
CACAAGGAGATAACCAAGCACAGGCCCGAAGTGATCCTGAACAATTTTAC
CACACGTTTGGGTCTGACCGTGGGCCGCATGCTGGGTGCCCTCTTCCATC
ACGATCCCGAGTTCCGCGGCCGCCGAGCGGTGACGTTCCACAATCAGCGA
GATTACATATTCTTCCGTCACCACCGCTACGAGTTCACCAAAGAGGGAAA
ACGCGTAAAGCTGCGCGAACTGGGGCCGCGGTTCACCCTGAAACTACGTT
CCCTGCAGGAGGGCACATTCGACAGCAAGACCGGTGACTATGCCTGGATA
ATCAGCAACAAACGGCACGCCATGGAGTCGCGACGTCGCTTCTTCCTCTA
GAAGCTTTCTAGACCAT
BS08101.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1185 | CG6712-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1336 | CG6712-RA | 92..1276 | 17..1201 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12095236..12096420 | 1201..17 | 5925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:14:37 has no hits.
BS08101.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:29 Download gff for
BS08101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 1..1185 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:40 Download gff for
BS08101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 91..1284 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:15 Download gff for
BS08101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..1276 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:29 Download gff for
BS08101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 91..1284 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:57 Download gff for
BS08101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..1276 | 17..1201 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:57 Download gff for
BS08101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12095236..12096420 | 17..1201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:15 Download gff for
BS08101.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12095236..12096420 | 17..1201 | 100 | | Minus |
BS08101.pep Sequence
Translation from 16 to 1200
> BS08101.pep
MIKIKRKTAPPPVEQDSDSDSSFDEEEPQDLEVQEGPVTDSSDEEAASSS
KKTAKQGEASEDLKEEDDDDDEEENDDDDEEEDDDDDDDKKTRIPVLNPL
SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREK
DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTR
KFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNG
LLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGL
TVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLR
ELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL*
BS08101.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-PA | 394 | CG6712-PA | 1..394 | 1..394 | 2050 | 100 | Plus |
| CG11920-PA | 298 | CG11920-PA | 7..282 | 106..391 | 335 | 32.3 | Plus |
