Clone BS08110 Report

Search the DGRC for BS08110

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG9967-RA
Protein status:BS08110.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08110.3prime Sequence

922 bp (790 high quality bases) assembled on 2006-01-06

> BS08110.3prime
ATGGTCTAGAAAGCTTTTACTCTTCGATGGTGCAGAGCGTGGGCCGCGGG
CGGTTGGCAAGTCCTGTAATACTGCTGCTGGAGTATCCTTTTTTTGAGAC
CTTTTTGCTGCTGCCAAGGCCATCGCACGAGTCTGAGGGGTAGGAACTTG
GAGGAGTTGCGGATGCTGGCTTACTGCGGTTTTTAGGCTGCTGGCGATGG
ACGTAGATGCCGCTCCTGCGGATTTTGCGATACAGCGAGATGTACTTGCC
CGCTGTCGTCGTCCTTGGAACAATGCACTGCTCACAGAAGGCGGTCTTGC
TGCGGGCGGCCTCGCTCAGGTGGGCGTGGCCGAGGGCCTGCAGGAAGGCC
AGGACGAAGGCGTAGCAGTTGTGGCTCTCCTCCGCATAACTGGCGATGGA
CCAGCGCACCGATTGGGCGCAGATCTGCTGCAGGACCTCGTCCCAAAAGT
CGTGCCACGGCTCCGGCACATCGCCCACCATCAGCGACTGCCGCCACTCC
GGAGGATTATCATCCCGCCGATGGCGGCGAAGGCCAAAGCGATCGAACTC
CACGATGTCGCCGCCGGATGTGGTCACTGCGATATGCAAATCGGTGGCGT
TGCTGTAATCGTTGAGGAAATCGCCGGCGGAGGGACGCAGGACAATGGCG
CACGGATGCTGCGTGGCCCGCACAAAAGGATATGGCAGGCGGAAGGGCAG
GAGGAGGAGGCGTGGCCCGGCCCTGTCTAGTTGCGCACTCGGATCCGCAT
CCCCATCGACATCCCCATGCGCATCCACATCCGCGTCCAGTGGGGCATTG
CAATGGGGACAAGTGTGCGGCAAAGTGAAGCAGAAAACTTTCACGTTGCA
GTGATGAAAACAGAGGATGCCCGGGATCGGAGGTAATTGTGGTTGTACTT
GTCGTAGCCAACATGTCGACTG

BS08110.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-PB 897 CG9967-RB 40..897 874..17 4290 100 Minus
CG9967-PA 897 CG9967-RA 40..897 874..17 4290 100 Minus
CG9967-PB 897 CG9967-RB 1..41 914..874 180 97.5 Minus
CG9967-PA 897 CG9967-RA 1..41 914..874 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-RC 1628 CG9967-RC 609..1506 915..17 4455 99.8 Minus
CG9967-RA 1647 CG9967-RA 665..1562 915..17 4455 99.8 Minus
CG9967-RB 1783 CG9967-RB 764..1661 915..17 4455 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2308883..2309293 17..427 2055 100 Plus
2L 23513712 2L 2310126..2310428 612..915 1455 99.3 Plus
2L 23513712 2L 2309516..2309712 425..621 955 99 Plus
Blast to na_te.dros performed on 2015-02-11 17:55:05 has no hits.

BS08110.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:49 Download gff for BS08110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-PA 1..897 17..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:59 Download gff for BS08110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-PA 1..897 17..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:07 Download gff for BS08110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 758..1661 17..922 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:15 Download gff for BS08110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 758..1661 17..922 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:15 Download gff for BS08110.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2308883..2309290 17..424 100 <- Plus
2L 2309516..2309702 425..611 100 <- Plus
2L 2310126..2310434 612..922 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:07 Download gff for BS08110.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2308883..2309290 17..424 100 <- Plus
arm_2L 2309516..2309702 425..611 100 <- Plus
arm_2L 2310126..2310434 612..922 98   Plus

BS08110.5prime Sequence

929 bp (838 high quality bases) assembled on 2006-01-06

> BS08110.5prime
GAAGTTATCAGTCGACATGTTGGCTACGACAAGTACAACCACAATTACCT
CGGATCCGGGCATCCTCTGTTTTCATCACTGCAACGTGAAAGTTTTCTGC
TTCACTTTGCCGCACACTTGTCCCCATTGCAATGCCCCACTGGACGCGGA
TGTGGATGCGCATGGGGATGTCGATGGGGATGCGGATCCGAGTGCGCAAC
TAGACAGGGCCGGGCCACGCCTCCTCCTCCTGCCCTTCCGCCTGCCATAT
CCTTTTGTGCGGGCCACGCAGCATCCGTGCGCCATTGTCCTGCGTCCCTC
CGCCGGCGATTTCCTCAACGATTACAGCAACGCCACCGATTTGCATATCG
CAGTGACCACATCCGGCGGCGACATCGTGGAGTTCGATCGCTTTGGCCTT
CGCCGCCATCGGCGGGATGATAATCCTCCGGAGTGGCGGCAGTCGCTGAT
GGTGGGCGATGTGCCGGAGCCGTGGCACGACTTTTGGGACGAGGTCCTGC
AGCAGATCTGCGCCCAATCGGTGCGCTGGTCCATCGCCAGTTATGCGGAG
GAGAGCCACAACTGCTACGCCTTCGTCCTGGCCTTCCTGCAGGCCCTCGG
CCACGCCCACCTGAGCGAGGCCGCCCGCAGCAAGACCGCCTTCTGTGAGC
AGTGCATTGTTCCAAGGACGACGACAGCGGGCAAGTACATCTCGCTGTAT
CGCANAATCCGCAGGAGCGGCATCTACGTCCATCGCCAGCAGCCTAAAAA
CCGCAGTAAGCCAGCATCCGCAACTCCTCCAAGTTCCTACCCCTCAGACT
CGTGCGATGGCCTTGGCAGCAGCAAAAAGGTCTCAAAAAAAGGATACTCC
AGCAGCAGTATTACAGGACTTGCCAACCGCCCGCGGCCCACGCTCTGCAC
CATCGAAGAGTAAAAGCCTTTCTAGACCA

BS08110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-PB 897 CG9967-RB 1..897 17..913 4466 99.8 Plus
CG9967-PA 897 CG9967-RA 1..897 17..913 4466 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-RC 1628 CG9967-RC 609..1506 16..913 4479 99.9 Plus
CG9967-RA 1647 CG9967-RA 665..1562 16..913 4479 99.9 Plus
CG9967-RB 1783 CG9967-RB 764..1661 16..913 4479 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2308883..2309293 913..503 2044 99.8 Minus
2L 23513712 2L 2310126..2310428 318..16 1515 100 Minus
2L 23513712 2L 2309516..2309712 505..309 955 99 Minus
Blast to na_te.dros performed on 2015-02-13 07:58:28 has no hits.

BS08110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:51 Download gff for BS08110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:01 Download gff for BS08110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:01 Download gff for BS08110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 755..1661 5..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:48 Download gff for BS08110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 755..1661 5..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:48 Download gff for BS08110.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2308883..2309290 506..913 99 <- Minus
2L 2309516..2309702 319..505 100 <- Minus
2L 2310126..2310437 5..318 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:01 Download gff for BS08110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2308883..2309290 506..913 99 <- Minus
arm_2L 2309516..2309702 319..505 100 <- Minus
arm_2L 2310126..2310437 5..318 98   Minus

BS08110.complete Sequence

929 bp (929 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636102

> BS08110.complete
GAAGTTATCAGTCGACATGTTGGCTACGACAAGTACAACCACAATTACCT
CGGATCCGGGCATCCTCTGTTTTCATCACTGCAACGTGAAAGTTTTCTGC
TTCACTTTGCCGCACACTTGTCCCCATTGCAATGCCCCACTGGACGCGGA
TGTGGATGCGCATGGGGATGTCGATGGGGATGCGGATCCGAGTGCGCAAC
TAGACAGGGCCGGGCCACGCCTCCTCCTCCTGCCCTTCCGCCTGCCATAT
CCTTTTGTGCGGGCCACGCAGCATCCGTGCGCCATTGTCCTGCGTCCCTC
CGCCGGCGATTTCCTCAACGATTACAGCAACGCCACCGATTTGCATATCG
CAGTGACCACATCCGGCGGCGACATCGTGGAGTTCGATCGCTTTGGCCTT
CGCCGCCATCGGCGGGATGATAATCCTCCGGAGTGGCGGCAGTCGCTGAT
GGTGGGCGATGTGCCGGAGCCGTGGCACGACTTTTGGGACGAGGTCCTGC
AGCAGATCTGCGCCCAATCGGTGCGCTGGTCCATCGCCAGTTATGCGGAG
GAGAGCCACAACTGCTACGCCTTCGTCCTGGCCTTCCTGCAGGCCCTCGG
CCACGCCCACCTGAGCGAGGCCGCCCGCAGCAAGACCGCCTTCTGTGAGC
AGTGCATTGTTCCAAGGACGACGACAGCGGGCAAGTACATCTCGCTGTAT
CGCAAAATCCGCAGGAGCGGCATCTACGTCCATCGCCAGCAGCCTAAAAA
CCGCAGTAAGCCAGCATCCGCAACTCCTCCAAGTTCCTACCCCTCAGACT
CGTGCGATGGCCTTGGCAGCAGCAAAAAGGTCTCAAAAAAAGGATACTCC
AGCAGCAGTATTACAGGACTTGCCAACCGCCCGCGGCCCACGCTCTGCAC
CATCGAAGAGTAAAAGCTTTCTAGACCAT

BS08110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-RC 897 CG9967-PC 1..897 17..913 4485 100 Plus
CG9967-RA 897 CG9967-PA 1..897 17..913 4485 100 Plus
CG9967-RB 897 CG9967-PB 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-RC 1628 CG9967-RC 609..1506 16..913 4490 100 Plus
CG9967-RA 1647 CG9967-RA 665..1562 16..913 4490 100 Plus
CG9967-RB 1783 CG9967-RB 764..1661 16..913 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2308883..2309293 913..503 2055 100 Minus
2L 23513712 2L 2310126..2310428 318..16 1515 100 Minus
2L 23513712 2L 2309516..2309712 505..309 955 99 Minus
Blast to na_te.dros performed on 2014-11-27 14:32:12 has no hits.

BS08110.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:15 Download gff for BS08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:22 Download gff for BS08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 632..1538 5..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:42 Download gff for BS08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 770..1659 22..911 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:16 Download gff for BS08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RA 632..1538 5..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:32 Download gff for BS08110.complete
Subject Subject Range Query Range Percent Splice Strand
CG9967-RB 770..1659 22..911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:32 Download gff for BS08110.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2308885..2309290 506..911 100 <- Minus
2L 2309516..2309702 319..505 100 <- Minus
2L 2310126..2310422 22..318 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:42 Download gff for BS08110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2308885..2309290 506..911 100 <- Minus
arm_2L 2309516..2309702 319..505 100 <- Minus
arm_2L 2310126..2310422 22..318 100   Minus

BS08110.pep Sequence

Translation from 16 to 912

> BS08110.pep
MLATTSTTTITSDPGILCFHHCNVKVFCFTLPHTCPHCNAPLDADVDAHG
DVDGDADPSAQLDRAGPRLLLLPFRLPYPFVRATQHPCAIVLRPSAGDFL
NDYSNATDLHIAVTTSGGDIVEFDRFGLRRHRRDDNPPEWRQSLMVGDVP
EPWHDFWDEVLQQICAQSVRWSIASYAEESHNCYAFVLAFLQALGHAHLS
EAARSKTAFCEQCIVPRTTTAGKYISLYRKIRRSGIYVHRQQPKNRSKPA
SATPPSSYPSDSCDGLGSSKKVSKKGYSSSSITGLANRPRPTLCTIEE*

BS08110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9967-PC 298 CG9967-PC 1..298 1..298 1615 100 Plus
CG9967-PA 298 CG9967-PA 1..298 1..298 1615 100 Plus
CG9967-PB 298 CG9967-PB 1..298 1..298 1615 100 Plus