Clone Sequence Records
BS08110.3prime Sequence
922 bp (790 high quality bases) assembled on 2006-01-06
> BS08110.3prime
ATGGTCTAGAAAGCTTTTACTCTTCGATGGTGCAGAGCGTGGGCCGCGGG
CGGTTGGCAAGTCCTGTAATACTGCTGCTGGAGTATCCTTTTTTTGAGAC
CTTTTTGCTGCTGCCAAGGCCATCGCACGAGTCTGAGGGGTAGGAACTTG
GAGGAGTTGCGGATGCTGGCTTACTGCGGTTTTTAGGCTGCTGGCGATGG
ACGTAGATGCCGCTCCTGCGGATTTTGCGATACAGCGAGATGTACTTGCC
CGCTGTCGTCGTCCTTGGAACAATGCACTGCTCACAGAAGGCGGTCTTGC
TGCGGGCGGCCTCGCTCAGGTGGGCGTGGCCGAGGGCCTGCAGGAAGGCC
AGGACGAAGGCGTAGCAGTTGTGGCTCTCCTCCGCATAACTGGCGATGGA
CCAGCGCACCGATTGGGCGCAGATCTGCTGCAGGACCTCGTCCCAAAAGT
CGTGCCACGGCTCCGGCACATCGCCCACCATCAGCGACTGCCGCCACTCC
GGAGGATTATCATCCCGCCGATGGCGGCGAAGGCCAAAGCGATCGAACTC
CACGATGTCGCCGCCGGATGTGGTCACTGCGATATGCAAATCGGTGGCGT
TGCTGTAATCGTTGAGGAAATCGCCGGCGGAGGGACGCAGGACAATGGCG
CACGGATGCTGCGTGGCCCGCACAAAAGGATATGGCAGGCGGAAGGGCAG
GAGGAGGAGGCGTGGCCCGGCCCTGTCTAGTTGCGCACTCGGATCCGCAT
CCCCATCGACATCCCCATGCGCATCCACATCCGCGTCCAGTGGGGCATTG
CAATGGGGACAAGTGTGCGGCAAAGTGAAGCAGAAAACTTTCACGTTGCA
GTGATGAAAACAGAGGATGCCCGGGATCGGAGGTAATTGTGGTTGTACTT
GTCGTAGCCAACATGTCGACTG
BS08110.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-PB | 897 | CG9967-RB | 40..897 | 874..17 | 4290 | 100 | Minus |
CG9967-PA | 897 | CG9967-RA | 40..897 | 874..17 | 4290 | 100 | Minus |
CG9967-PB | 897 | CG9967-RB | 1..41 | 914..874 | 180 | 97.5 | Minus |
CG9967-PA | 897 | CG9967-RA | 1..41 | 914..874 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 1628 | CG9967-RC | 609..1506 | 915..17 | 4455 | 99.8 | Minus |
CG9967-RA | 1647 | CG9967-RA | 665..1562 | 915..17 | 4455 | 99.8 | Minus |
CG9967-RB | 1783 | CG9967-RB | 764..1661 | 915..17 | 4455 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2308883..2309293 | 17..427 | 2055 | 100 | Plus |
2L | 23513712 | 2L | 2310126..2310428 | 612..915 | 1455 | 99.3 | Plus |
2L | 23513712 | 2L | 2309516..2309712 | 425..621 | 955 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:55:05 has no hits.
BS08110.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:49 Download gff for
BS08110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 1..897 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:30:59 Download gff for
BS08110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 1..897 | 17..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:07 Download gff for
BS08110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 758..1661 | 17..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:15 Download gff for
BS08110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 758..1661 | 17..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:15 Download gff for
BS08110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2308883..2309290 | 17..424 | 100 | <- | Plus |
2L | 2309516..2309702 | 425..611 | 100 | <- | Plus |
2L | 2310126..2310434 | 612..922 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:07 Download gff for
BS08110.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2308883..2309290 | 17..424 | 100 | <- | Plus |
arm_2L | 2309516..2309702 | 425..611 | 100 | <- | Plus |
arm_2L | 2310126..2310434 | 612..922 | 98 | | Plus |
BS08110.5prime Sequence
929 bp (838 high quality bases) assembled on 2006-01-06
> BS08110.5prime
GAAGTTATCAGTCGACATGTTGGCTACGACAAGTACAACCACAATTACCT
CGGATCCGGGCATCCTCTGTTTTCATCACTGCAACGTGAAAGTTTTCTGC
TTCACTTTGCCGCACACTTGTCCCCATTGCAATGCCCCACTGGACGCGGA
TGTGGATGCGCATGGGGATGTCGATGGGGATGCGGATCCGAGTGCGCAAC
TAGACAGGGCCGGGCCACGCCTCCTCCTCCTGCCCTTCCGCCTGCCATAT
CCTTTTGTGCGGGCCACGCAGCATCCGTGCGCCATTGTCCTGCGTCCCTC
CGCCGGCGATTTCCTCAACGATTACAGCAACGCCACCGATTTGCATATCG
CAGTGACCACATCCGGCGGCGACATCGTGGAGTTCGATCGCTTTGGCCTT
CGCCGCCATCGGCGGGATGATAATCCTCCGGAGTGGCGGCAGTCGCTGAT
GGTGGGCGATGTGCCGGAGCCGTGGCACGACTTTTGGGACGAGGTCCTGC
AGCAGATCTGCGCCCAATCGGTGCGCTGGTCCATCGCCAGTTATGCGGAG
GAGAGCCACAACTGCTACGCCTTCGTCCTGGCCTTCCTGCAGGCCCTCGG
CCACGCCCACCTGAGCGAGGCCGCCCGCAGCAAGACCGCCTTCTGTGAGC
AGTGCATTGTTCCAAGGACGACGACAGCGGGCAAGTACATCTCGCTGTAT
CGCANAATCCGCAGGAGCGGCATCTACGTCCATCGCCAGCAGCCTAAAAA
CCGCAGTAAGCCAGCATCCGCAACTCCTCCAAGTTCCTACCCCTCAGACT
CGTGCGATGGCCTTGGCAGCAGCAAAAAGGTCTCAAAAAAAGGATACTCC
AGCAGCAGTATTACAGGACTTGCCAACCGCCCGCGGCCCACGCTCTGCAC
CATCGAAGAGTAAAAGCCTTTCTAGACCA
BS08110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-PB | 897 | CG9967-RB | 1..897 | 17..913 | 4466 | 99.8 | Plus |
CG9967-PA | 897 | CG9967-RA | 1..897 | 17..913 | 4466 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 1628 | CG9967-RC | 609..1506 | 16..913 | 4479 | 99.9 | Plus |
CG9967-RA | 1647 | CG9967-RA | 665..1562 | 16..913 | 4479 | 99.9 | Plus |
CG9967-RB | 1783 | CG9967-RB | 764..1661 | 16..913 | 4479 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2308883..2309293 | 913..503 | 2044 | 99.8 | Minus |
2L | 23513712 | 2L | 2310126..2310428 | 318..16 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 2309516..2309712 | 505..309 | 955 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:58:28 has no hits.
BS08110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:51 Download gff for
BS08110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:01 Download gff for
BS08110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:01 Download gff for
BS08110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 755..1661 | 5..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:55:48 Download gff for
BS08110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 755..1661 | 5..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:55:48 Download gff for
BS08110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2308883..2309290 | 506..913 | 99 | <- | Minus |
2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
2L | 2310126..2310437 | 5..318 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:01 Download gff for
BS08110.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2308883..2309290 | 506..913 | 99 | <- | Minus |
arm_2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
arm_2L | 2310126..2310437 | 5..318 | 98 | | Minus |
BS08110.complete Sequence
929 bp (929 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636102
> BS08110.complete
GAAGTTATCAGTCGACATGTTGGCTACGACAAGTACAACCACAATTACCT
CGGATCCGGGCATCCTCTGTTTTCATCACTGCAACGTGAAAGTTTTCTGC
TTCACTTTGCCGCACACTTGTCCCCATTGCAATGCCCCACTGGACGCGGA
TGTGGATGCGCATGGGGATGTCGATGGGGATGCGGATCCGAGTGCGCAAC
TAGACAGGGCCGGGCCACGCCTCCTCCTCCTGCCCTTCCGCCTGCCATAT
CCTTTTGTGCGGGCCACGCAGCATCCGTGCGCCATTGTCCTGCGTCCCTC
CGCCGGCGATTTCCTCAACGATTACAGCAACGCCACCGATTTGCATATCG
CAGTGACCACATCCGGCGGCGACATCGTGGAGTTCGATCGCTTTGGCCTT
CGCCGCCATCGGCGGGATGATAATCCTCCGGAGTGGCGGCAGTCGCTGAT
GGTGGGCGATGTGCCGGAGCCGTGGCACGACTTTTGGGACGAGGTCCTGC
AGCAGATCTGCGCCCAATCGGTGCGCTGGTCCATCGCCAGTTATGCGGAG
GAGAGCCACAACTGCTACGCCTTCGTCCTGGCCTTCCTGCAGGCCCTCGG
CCACGCCCACCTGAGCGAGGCCGCCCGCAGCAAGACCGCCTTCTGTGAGC
AGTGCATTGTTCCAAGGACGACGACAGCGGGCAAGTACATCTCGCTGTAT
CGCAAAATCCGCAGGAGCGGCATCTACGTCCATCGCCAGCAGCCTAAAAA
CCGCAGTAAGCCAGCATCCGCAACTCCTCCAAGTTCCTACCCCTCAGACT
CGTGCGATGGCCTTGGCAGCAGCAAAAAGGTCTCAAAAAAAGGATACTCC
AGCAGCAGTATTACAGGACTTGCCAACCGCCCGCGGCCCACGCTCTGCAC
CATCGAAGAGTAAAAGCTTTCTAGACCAT
BS08110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 897 | CG9967-PC | 1..897 | 17..913 | 4485 | 100 | Plus |
CG9967-RA | 897 | CG9967-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
CG9967-RB | 897 | CG9967-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-RC | 1628 | CG9967-RC | 609..1506 | 16..913 | 4490 | 100 | Plus |
CG9967-RA | 1647 | CG9967-RA | 665..1562 | 16..913 | 4490 | 100 | Plus |
CG9967-RB | 1783 | CG9967-RB | 764..1661 | 16..913 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2308883..2309293 | 913..503 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 2310126..2310428 | 318..16 | 1515 | 100 | Minus |
2L | 23513712 | 2L | 2309516..2309712 | 505..309 | 955 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:32:12 has no hits.
BS08110.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:15 Download gff for
BS08110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:22 Download gff for
BS08110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RA | 632..1538 | 5..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:42 Download gff for
BS08110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 770..1659 | 22..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:16 Download gff for
BS08110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RA | 632..1538 | 5..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:32 Download gff for
BS08110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9967-RB | 770..1659 | 22..911 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:32 Download gff for
BS08110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2308885..2309290 | 506..911 | 100 | <- | Minus |
2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
2L | 2310126..2310422 | 22..318 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:42 Download gff for
BS08110.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2308885..2309290 | 506..911 | 100 | <- | Minus |
arm_2L | 2309516..2309702 | 319..505 | 100 | <- | Minus |
arm_2L | 2310126..2310422 | 22..318 | 100 | | Minus |
BS08110.pep Sequence
Translation from 16 to 912
> BS08110.pep
MLATTSTTTITSDPGILCFHHCNVKVFCFTLPHTCPHCNAPLDADVDAHG
DVDGDADPSAQLDRAGPRLLLLPFRLPYPFVRATQHPCAIVLRPSAGDFL
NDYSNATDLHIAVTTSGGDIVEFDRFGLRRHRRDDNPPEWRQSLMVGDVP
EPWHDFWDEVLQQICAQSVRWSIASYAEESHNCYAFVLAFLQALGHAHLS
EAARSKTAFCEQCIVPRTTTAGKYISLYRKIRRSGIYVHRQQPKNRSKPA
SATPPSSYPSDSCDGLGSSKKVSKKGYSSSSITGLANRPRPTLCTIEE*
BS08110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9967-PC | 298 | CG9967-PC | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PA | 298 | CG9967-PA | 1..298 | 1..298 | 1615 | 100 | Plus |
CG9967-PB | 298 | CG9967-PB | 1..298 | 1..298 | 1615 | 100 | Plus |