Clone Sequence Records
BS08112.3prime Sequence
843 bp (833 high quality bases) assembled on 2006-01-06
> BS08112.3prime
ATGGTCTAGAAAGCTTTTACGACTGCGGCAGGTTCTGGTAGTAGGTGGCC
AGGATGCGCCAAGCCTCCGGTTCCATGAAGCCATCCGGCGGACTGGCTCC
CGTTTTGGCCAGGGTGCGCATCTTGGTTCCCGAGATGAACTCAAACTCAT
CCTTCCTCTTGGGCTCGAAGAAGGCCATTCTACTGGCGCTCTTGTCATAG
GCAGCAACACGGAAGGGCAGGATCTCCATGCTGTCTAGTCCCTGGGCCAT
CTTAAGCACTCGCGCACCATGGGTGGCATCGTATAGGTTTCCATCCGGAT
AAGTTTCCTTGGCCGGATGCGGCATGCCAGCCGGATCACGGCCTACAATG
TAGAAGTTCGCACCGGCGTTCATGCGCGCCTTTGCGTGCCACTGCACCTC
CGTGGGACCGGCGTACATCATTGGCGAGGGGAAGATGGCCAGCACTGTGT
CCTCTCGTCGCAAGACACCTGCGTCGAGCACGGCCTGGTGCTGCTTCATG
CGCACATCCAGCGGCACATCGTCGTCCTTGGTCCAGCCACCCAGAGGATG
CAGCAGCAGCACTGGCTGCTTGAAGCCGCGCTCCAGCAGCTGGCGGCGAG
TGTCTTGCATGAGCAGGGCATGGCCGTTGTGGATGGGATTGCGCAACTGA
AAGGCGAAGATGGCGTCGGCATTCAGCTCCTTAAAGCGGCGCCTTAACTC
GTTGGGAGTCAGCCTGTACTGATCCAGTCCGTCCTCCCAGCGGATACGTT
CGATCACTGCCAGATCGCCACCGACCAAATAATCCCCGGACTCGTAGACC
TGCTTACTGTACGGGTGATTGGGATTGCTGGTGCCGAACTGGC
BS08112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8363-PC | 1890 | Paps-RC | 1064..1890 | 843..17 | 4135 | 100 | Minus |
| CG8363-PA | 1890 | Paps-RA | 1064..1890 | 843..17 | 4135 | 100 | Minus |
| CG8363-PD | 1974 | Paps-RD | 1148..1974 | 843..17 | 4135 | 100 | Minus |
| CG8363-PE | 1893 | Paps-RE | 1067..1893 | 843..17 | 4135 | 100 | Minus |
| CG8363-PB | 1890 | Paps-RB | 1064..1890 | 843..17 | 4135 | 100 | Minus |
| CG8363-PF | 1893 | Paps-RF | 1067..1893 | 843..17 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 07:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RH | 2686 | CG8363-RH | 1546..2372 | 843..17 | 4135 | 100 | Minus |
| Papss-RG | 2432 | CG8363-RG | 1292..2118 | 843..17 | 4135 | 100 | Minus |
| Papss-RF | 2729 | CG8363-RF | 1589..2415 | 843..17 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 07:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19859721..19860340 | 843..224 | 3100 | 100 | Minus |
| 3L | 28110227 | 3L | 19860403..19860611 | 225..17 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 07:29:03 has no hits.
BS08112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:54 Download gff for
BS08112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paps-PC | 1064..1890 | 17..843 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:05 Download gff for
BS08112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8363-PF | 1067..1893 | 17..843 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:14:55 Download gff for
BS08112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RF | 1589..2421 | 12..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:44:20 Download gff for
BS08112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RF | 1589..2421 | 12..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:44:20 Download gff for
BS08112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19859721..19860340 | 224..843 | 100 | -> | Minus |
| 3L | 19860405..19860617 | 12..223 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:14:55 Download gff for
BS08112.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19852821..19853440 | 224..843 | 100 | -> | Minus |
| arm_3L | 19853505..19853717 | 12..223 | 98 | | Minus |
BS08112.5prime Sequence
908 bp (871 high quality bases) assembled on 2006-01-06
> BS08112.5prime
GAAGTTATCAGTCGACATGAGTGAAGTTCCGGAGAGCAGCAAAAAGCGTC
AAAAGACGTGCCTACAGGTGGCGACGAATGTGACCGAGCAAAAGCACCAT
GTCACCAGGGAGACGCGCGGCAAGAATTTGGGACTCTGTCGAGGATTCCG
AGGATGCACGGTGTGGCTGACTGGCCTCAGTGGAGCTGGAAAGACCTCGA
TTGCCTTCGAACTGGAGGCGTACCTGGTATCCCGGGGCATTCCGGCCTAC
GGGTTGGACGGCGACAACATTCGCACCGGACTGAACAAGAACCTGGGCTT
CACGCCCGCCGATCGCGAGGAAAACATTCGCCGCGTGGGCGAGGTGGCCA
AGTTGTTTGCCGACAGCGGAGTGGTGGCCATCTGCAGCTTCGTTTCGCCC
TTCGCCGACGATCGTGAGATGGCGCGCAAGATCCACAAGGATGCGGGTCT
GAAGTTCTATGAGATATTCGTGGACACACCGCTGGATGTGTGCGAAACCC
GGGACGTGAAGGGTCTATACAAGAAGGCGCGCGAGGGCGTAATCAAAGGA
TTCACGGGCATTACGCAGGAGTACGAGCGACCCCAGATGCCGGAGCTGGT
GGTCAACACGCACGGCTACACGGTGCGCGAGTCCACTCAGAAGCTGGTGA
CGCTGCTCGAACAGGAGGGCATTATTCCGCGCTCGCTGCGCGACGTAGAC
CTGCTGCCGGAGCTTTATCCCAGCGAATCCATTGCCACGGAGGCACTGCG
TCACGAGGCCGAGTCGCTGCAAGCCATCGAAATCAGCACCGTGGAGCTGC
AGTGGGTGCAAGTACTGGCCGAGGGATGGGCATATCCACTGCGCGGCTTC
ATGCGCGAGGATGAGTACCTGCAGACGCTGCACTTCAACACACTTCAGAG
CGGCATGG
BS08112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8363-PC | 1890 | Paps-RC | 1..892 | 17..908 | 4460 | 100 | Plus |
| CG8363-PA | 1890 | Paps-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
| CG8363-PB | 1890 | Paps-RB | 1..892 | 17..908 | 4460 | 100 | Plus |
| CG8363-PD | 1974 | Paps-RD | 125..976 | 57..908 | 4260 | 100 | Plus |
| CG8363-PE | 1893 | Paps-RE | 45..895 | 58..908 | 4255 | 100 | Plus |
| CG8363-PF | 1893 | Paps-RF | 45..895 | 58..908 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RG | 2432 | CG8363-RG | 229..1120 | 17..908 | 4460 | 100 | Plus |
| Papss-RB | 2394 | CG8363-RB | 191..1082 | 17..908 | 4460 | 100 | Plus |
| Papss-RA | 2417 | CG8363-RA | 214..1105 | 17..908 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19859549 | 173..908 | 3680 | 100 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 58..174 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 19845589..19845630 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:07:07 has no hits.
BS08112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:55 Download gff for
BS08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paps-PC | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:07 Download gff for
BS08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8363-PB | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:24 Download gff for
BS08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RA | 207..1105 | 8..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:42 Download gff for
BS08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RA | 207..1105 | 8..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:42 Download gff for
BS08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19845582..19845630 | 8..58 | 92 | -> | Plus |
| 3L | 19858378..19858492 | 59..173 | 100 | -> | Plus |
| 3L | 19858815..19859549 | 174..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:24 Download gff for
BS08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19838682..19838730 | 8..58 | 92 | -> | Plus |
| arm_3L | 19851478..19851592 | 59..173 | 100 | -> | Plus |
| arm_3L | 19851915..19852649 | 174..908 | 100 | | Plus |
BS08112.complete Sequence
1922 bp assembled on 2010-05-10
GenBank Submission: KX806086
> BS08112.complete
GAAGTTATCAGTCGACATGAGTGAAGTTCCGGAGAGCAGCAAAAAGCGTC
AAAAGACGTGCCTACAGGTGGCGACGAATGTGACCGAGCAAAAGCACCAT
GTCACCAGGGAGACGCGCGGCAAGAATTTGGGACTCTGTCGAGGATTCCG
AGGATGCACGGTGTGGCTGACTGGCCTCAGTGGAGCTGGAAAGACCTCGA
TTGCCTTCGAACTGGAGGCGTACCTGGTATCCCGGGGCATTCCGGCCTAC
GGGTTGGACGGCGACAACATTCGCACCGGACTGAACAAGAACCTGGGCTT
CACGCCCGCCGATCGCGAGGAAAACATTCGCCGCGTGGGCGAGGTGGCCA
AGTTGTTTGCCGACAGCGGAGTGGTGGCCATCTGCAGCTTCGTTTCGCCC
TTCGCCGACGATCGTGAGATGGCGCGCAAGATCCACAAGGATGCGGGTCT
GAAGTTCTATGAGATATTCGTGGACACACCGCTGGATGTGTGCGAAACCC
GGGACGTGAAGGGTCTATACAAGAAGGCGCGCGAGGGCGTAATCAAAGGA
TTCACGGGCATTACGCAGGAGTACGAGCGACCCCAGATGCCGGAGCTGGT
GGTCAACACGCACGGCTACACGGTGCGCGAGTCCACTCAGAAGCTGGTGA
CGCTGCTCGAACAGGAGGGCATTATTCCGCGCTCGCTGCGCGACGTAGAC
CTGCTGCCGGAGCTTTATCCCAGCGAATCCATTGCCACGGAGGCACTGCG
TCACGAGGCCGAGTCGCTGCAAGCCATCGAAATCAGCACCGTGGAGCTGC
AGTGGGTGCAAGTACTGGCCGAGGGATGGGCATATCCACTGCGCGGCTTC
ATGCGCGAGGATGAGTACCTGCAGACGCTGCACTTCAACACACTTCAGAG
CGGCATGGACGGTTCCTATCGCGAGAACCACTCGGTGCCCATTGTTTTGA
GCGCCACGCAGGCGGACAAGGATCGTCTGGACGGCTGCTCCTCGCTGACT
CTCAAATACCAAGGCAAGGCGGTAGCCATTCTGCGGCGTCCCGAGTTCTA
CTTTCAGCGTAAGGAGGAGCGGCTGGCCCGCCAGTTCGGCACCAGCAATC
CCAATCACCCGTACAGTAAGCAGGTCTACGAGTCCGGGGATTATTTGGTC
GGTGGCGATCTGGCAGTGATCGAACGTATCCGCTGGGAGGACGGACTGGA
TCAGTACAGGCTGACTCCCAACGAGTTAAGGCGCCGCTTTAAGGAGCTGA
ATGCCGACGCCATCTTCGCCTTTCAGTTGCGCAATCCCATCCACAACGGC
CATGCCCTGCTCATGCAAGACACTCGCCGCCAGCTGCTGGAGCGCGGCTT
CAAGCAGCCAGTGCTGCTGCTGCATCCTCTGGGTGGCTGGACCAAGGACG
ACGATGTGCCGCTGGATGTGCGCATGAAGCAGCACCAGGCCGTGCTCGAC
GCAGGTGTCTTGCGACGAGAGGACACAGTGCTGGCCATCTTCCCCTCGCC
AATGATGTACGCCGGTCCCACGGAGGTGCAGTGGCACGCAAAGGCGCGCA
TGAACGCCGGTGCGAACTTCTACATTGTAGGCCGTGATCCGGCTGGCATG
CCGCATCCGGCCAAGGAAACTTATCCGGATGGAAACCTATACGATGCCAC
CCATGGTGCGCGAGTGCTTAAGATGGCCCAGGGACTAGACAGCATGGAGA
TCCTGCCCTTCCGTGTTGCTGCCTATGACAAGAGCGCCAGTAGAATGGCC
TTCTTCGAGCCCAAGAGGAAGGATGAGTTTGAGTTCATCTCGGGAACCAA
GATGCGCACCCTGGCCAAAACGGGAGCCAGTCCGCCGGATGGCTTCATGG
AACCGGAGGCTTGGCGCATCCTGGCCACCTACTACCAGAACCTGCCGCAG
TCGTAAAAGCTTTCTAGACCAT
BS08112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RG | 1890 | CG8363-PG | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| Papss-RB | 1890 | CG8363-PB | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| Papss-RA | 1890 | CG8363-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-RG | 2432 | CG8363-RG | 229..2118 | 17..1906 | 9450 | 100 | Plus |
| Papss-RB | 2394 | CG8363-RB | 191..2080 | 17..1906 | 9450 | 100 | Plus |
| Papss-RA | 2417 | CG8363-RA | 214..2103 | 17..1906 | 9450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19858814..19860340 | 173..1699 | 7635 | 100 | Plus |
| 3L | 28110227 | 3L | 19860403..19860611 | 1698..1906 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 19858377..19858493 | 58..174 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 19845589..19845630 | 17..58 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:57:14 has no hits.
BS08112.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:50 Download gff for
BS08112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RA | 210..2097 | 17..1904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:39 Download gff for
BS08112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RA | 214..2101 | 17..1904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:09 Download gff for
BS08112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Papss-RA | 214..2101 | 17..1904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:09 Download gff for
BS08112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19845589..19845630 | 17..58 | 100 | -> | Plus |
| 3L | 19858378..19858492 | 59..173 | 100 | -> | Plus |
| 3L | 19858815..19860340 | 174..1699 | 100 | -> | Plus |
| 3L | 19860405..19860609 | 1700..1904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:39 Download gff for
BS08112.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19838689..19838730 | 17..58 | 100 | -> | Plus |
| arm_3L | 19851478..19851592 | 59..173 | 100 | -> | Plus |
| arm_3L | 19851915..19853440 | 174..1699 | 100 | -> | Plus |
| arm_3L | 19853505..19853709 | 1700..1904 | 100 | | Plus |
BS08112.pep Sequence
Translation from 16 to 1905
> BS08112.pep
MSEVPESSKKRQKTCLQVATNVTEQKHHVTRETRGKNLGLCRGFRGCTVW
LTGLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADR
EENIRRVGEVAKLFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYEI
FVDTPLDVCETRDVKGLYKKAREGVIKGFTGITQEYERPQMPELVVNTHG
YTVRESTQKLVTLLEQEGIIPRSLRDVDLLPELYPSESIATEALRHEAES
LQAIEISTVELQWVQVLAEGWAYPLRGFMREDEYLQTLHFNTLQSGMDGS
YRENHSVPIVLSATQADKDRLDGCSSLTLKYQGKAVAILRRPEFYFQRKE
ERLARQFGTSNPNHPYSKQVYESGDYLVGGDLAVIERIRWEDGLDQYRLT
PNELRRRFKELNADAIFAFQLRNPIHNGHALLMQDTRRQLLERGFKQPVL
LLHPLGGWTKDDDVPLDVRMKQHQAVLDAGVLRREDTVLAIFPSPMMYAG
PTEVQWHAKARMNAGANFYIVGRDPAGMPHPAKETYPDGNLYDATHGARV
LKMAQGLDSMEILPFRVAAYDKSASRMAFFEPKRKDEFEFISGTKMRTLA
KTGASPPDGFMEPEAWRILATYYQNLPQS*
BS08112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Papss-PG | 629 | CG8363-PG | 1..629 | 1..629 | 3289 | 100 | Plus |
| Papss-PB | 629 | CG8363-PB | 1..629 | 1..629 | 3289 | 100 | Plus |
| Papss-PA | 629 | CG8363-PA | 1..629 | 1..629 | 3289 | 100 | Plus |
| Papss-PC | 629 | CG8363-PC | 1..629 | 1..629 | 3289 | 100 | Plus |
| Papss-PD | 657 | CG8363-PD | 35..657 | 7..629 | 3228 | 99 | Plus |
