Clone Sequence Records
BS08114.3prime Sequence
907 bp (854 high quality bases) assembled on 2006-01-06
> BS08114.3prime
ATGGTCTAGAAAGCTTCTACTTCCGTTTGAGGTAATCTTCGTAGAGTTTC
AACAACTCTGGAGAAGTCCGCGGAGGCACCGCCTTCAAGGCGTGCTCGAA
GTCCGTCCACTTGACATCCTCCGCTTCGAAGCTTTGCTCCAGGGCTCTCA
GGGCAGCCTCATGGCATACGGCTTGTATTTCTGCACCGGAATATCCCTCC
GTCAGCTGCACCAACTTCTCCATGTCCACATCGTTTGATATCGGCATGGC
ACGCAGTTTGATCTTTAAGATCTCTCTACGTGCTTCACATTGCGGTAGTC
CCACGTAGAGAATTCGATCAATTCGGCCTGGACGAAGCAGTGCCTTGTCG
ATCATATCTGGACGATTGGTGGCAGCGACTATGGTGACATTTTGCAGTGC
CTCCACGCCATCCAGTTCGGTGAGCAGTTGCGTGAGGACGCGCTCTTTTA
CGGACGAACCAGAGCTGGATCCGTCGCCCTCCGAACGCTCGCCACCGATG
GCGTCGATTTCGTCGAAGAAAACTATGGCGGGTGCCACCTGGCGAGCCTT
TCGAAAGACCTCACGCACCGCTCGCTCCGATTCGCCCACCCACATGGAAA
AGAGCTCTGGTCCCTTGATGGACAGAAAATTAAGCTTGCTCTCGGTGGCC
AGGGCCTTGGCAATCATGGTTTTCGAGCAGCCTGGCGGTCCAAACATGAG
GATACCCCTGGGTGGCTTGATACCCAGGCGTTGGAACTTATCCGCGTGCA
GCAGTGGCCACTCGATGGCCTGCTGCATGGCCAAACGTAGCTCGGATTGA
CCGCCAATGTCGGACCACTGCACATTGGGACACTCGATGAGAACTTCACG
CATCGCCGATGGTTTAATGCGGGTCAAAGCCGCCTGTAGATGCNGCATCT
GTAGAGG
BS08114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-PA | 2400 | CG5776-RA | 1510..2400 | 907..17 | 4436 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 1561..2452 | 907..16 | 4449 | 99.9 | Minus |
| CG5776-RA | 2912 | CG5776-RA | 1561..2452 | 907..16 | 4449 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12701889..12702780 | 16..907 | 4449 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:27:16 has no hits.
BS08114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:56 Download gff for
BS08114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1510..2400 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:08 Download gff for
BS08114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1510..2400 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:32:25 Download gff for
BS08114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 1561..2454 | 11..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:47:32 Download gff for
BS08114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 1561..2454 | 11..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:47:32 Download gff for
BS08114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12701887..12702780 | 11..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:32:25 Download gff for
BS08114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12701887..12702780 | 11..907 | 99 | | Plus |
BS08114.5prime Sequence
851 bp (800 high quality bases) assembled on 2006-01-06
> BS08114.5prime
GAAGTTATCAGTCGACATGCCGCCAAAGTCAAGCAGCAAGAAAAACCAGG
TTACTTGGTACCACTGCGAGTCCTGCGGCGTCCACATTCCCTCGAAAGCG
AGAGATAACCACGAGGGCTTATGCTTCGCCATCAGCCAGGATGATGTTGG
TCCCGATTCTGAGGCGGAGTACGTTCGCAGTGGAGCAATCTATACGAGAA
GTCTTCAACAGCGTAATTTCGAGGTGGAGTCTCTGAAGGATCTGCCCACC
AAGTATGCCAATATGCTAGTCTTCGTCTCCGAGGGTGCGATGCAATTGGC
ACAGCTACACATTGGACAACATGTGGTGCTGGAAGCTCCATCGACGGCGG
AGCAGCCGCTGGTTAGGATTGTATGGCCCACATCAGAGCAATTCCTCACC
ACAGTATTTGTGAGCGAAGGGGATTTCAAACTCCATTGCACACAACTTCG
AGGAAAGCTACTCAAGATCTCTGCCTTGCATCCCAGTCGCCTCACTGCGG
CTGCCAGCATTTCCCTGAAGCATGTAAACACCACAGAGACCTCCCTGAAG
TCAGTACAACTGCAGGACGCCATTGCCCTTCTCAAAAGAGACATGGTCAA
TCGGGTATTCTACAAGGACAGTCTGATCCACATGAATTTCTTTAACAAAT
CGCTGACTTTTCGCCTGGAGCGATGGCAGAGCACAGTGGAAGAGGCTCTA
GCTGGTCTGAGTCTCGACTCCAAACCCTTGCAGTTCATCCAGGTTACCAA
CGTAACCAAGCTCCACCTGATAACCGACGATGCAAATCAGCAGGAGGAGG
AGCAAAAATAAGTCACAGGATCACCAATGCCAAATAGGCGGGCTGGATAG
G
BS08114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-PA | 2400 | CG5776-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 48..888 | 13..851 | 4140 | 99.6 | Plus |
| CG5776-RA | 2912 | CG5776-RA | 48..888 | 13..851 | 4140 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12703506..12703937 | 851..422 | 2060 | 99.5 | Minus |
| 2L | 23513712 | 2L | 12703995..12704404 | 422..13 | 2035 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:40:07 has no hits.
BS08114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:33:57 Download gff for
BS08114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:10 Download gff for
BS08114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:50 Download gff for
BS08114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..888 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:02 Download gff for
BS08114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..888 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:02 Download gff for
BS08114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12703506..12703936 | 423..851 | 99 | <- | Minus |
| 2L | 12703995..12704407 | 9..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:50 Download gff for
BS08114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12703506..12703936 | 423..851 | 99 | <- | Minus |
| arm_2L | 12703995..12704407 | 9..422 | 99 | | Minus |
BS08114.complete Sequence
2432 bp assembled on 2010-05-10
GenBank Submission: KX801369
> BS08114.complete
GAAGTTATCAGTCGACATGCCGCCAAAGTCAAGCAGCAAGAAAAACCAGG
TTACTTGGTACCACTGCGAGTCCTGCGGCGTCCACATTCCCTCGAAAGCG
AGAGATAACCACGAGGGCTTATGCTTCGCCATCAGCCAGGATGATGTTGG
TCCCGATTCTGAGGCGGAGTACGTTCGCAGTGGAGCAATCTATACGAGAA
GTCTTCAACAGCGTAATTTCGAGGTGGAGTCTCTGAAGGATCTGCCCACC
AAGTATGCCAATATGCTAGTCTTCGTCTCCGAGGGTGCGATGCAATTGGC
ACAGCTACACATTGGACAACATGTGGTGCTGGAAGCTCCATCGACGGCGG
AGCAGCCGCTGGTTAGGATTGTATGGCCCACATCAGAGCAATTCCTCACC
ACAGTATTTGTGAGCGAAGGGGATTTCAAACTCCATTGCACACAACTTCG
AGGAAAGCTACTCAAGATCTCTGCCTTGCATCCCAGTCGCCTCACTGCGG
CTGCCAGCATTTCCCTGAAGCATGTAAACACCACAGAGACCTCCCTGAAG
TCAGTACAACTGCAGGACGCCATTGCCCTTCTCAAAAGAGACATGGTCAA
TCGGGTATTCTACAAGGACAGTCTGATCCACATGAATTTCTTTAACAAAT
CGCTGACTTTTCGCCTGGAGCGATGGCAGAGCACAGTGGAAGAGGCTCTA
GCTGGTCTGAGTCTCGACTCCAAACCCTTGCAGTTCATCCAGGTTACCAA
CGTAACCAAGCTCCACCTGATAACCGACGATGCAAATCAGCAGGAGGAGG
AGCAAAAAATAAGTCACAGGATCACCAAATGCCAAATAGGCGGGCTGGAT
AGGCAATTGCAACTGGTTGAGGAGAGTATGGAGTACGCTTTGGGATTCCG
AACGTTGCCTGCAGGCCTTAGGGTTTCCCGCGGACTGCTTCTCTATGGCG
CCACTGGCTGTGGCAAGTCCATGGTGCTGGAAGCCATGTGCGCAGTGGCC
GAGGAACGTAGCCAAGGACATGTCCAGCTTATACGCATAAACAGCGGCGA
AGTGTACAGCAAATTCCTGGGCGAAACGGAACAGAAACTTGGTGCTATAT
TTGAGCGTGCCTACAATCACTATCCGCATCCAACGTTGCTGCTGATTGAG
GATGTGCACAACTTGTGTCCCAAGCAAGAAAACAGCGATCTTGTCAAGCG
CGTCTCATTGGCATTCTTATCCCTGCTGGATCAGCTAAGCTCTCCCAGCC
AGCTAAAGGGAAGCAAAACATTTGTCCTGGCCACTAGTTCTCAGATTGAT
ACCCTGCATCCGAGCATTCGGCGAGCTGGTCGATTGGACAATGAAGTGGA
GTTGGGTGCACCCAGCTCTCAGGCAAGGCTGGAAATTGTACGATGCCTCA
TCAAGTCAGTGGAGCATCAGTTGAGCGATGAGGAAGTGGAGCACGTTGCA
TCTATTACCCATGGCTACGTGGGAGCAGACTTAGCAAATCTCGTTTACGC
TGCCATGCTGCAGGCGCAACCGAATCCTCTACAGATGCCGCATCTACAGG
CGGCTTTGACCCGCATTAAACCATCGGCGATGCGTGAAGTTCTCATCGAG
TGTCCCAATGTGCAGTGGTCCGACATTGGCGGTCAATCCGAGCTACGTTT
GGCCATGCAGCAGGCCATCGAGTGGCCACTGCTGCACGCGGATAAGTTCC
AACGCCTGGGTATCAAGCCACCCAGGGGTATCCTCATGTTTGGACCGCCA
GGCTGCTCGAAAACCATGATTGCCAAGGCCCTGGCCACCGAGAGCAAGCT
TAATTTTCTGTCCATCAAGGGACCAGAGCTCTTTTCCATGTGGGTGGGCG
AATCGGAGCGAGCGGTGCGTGAGGTCTTTCGAAAGGCTCGCCAGGTGGCA
CCCGCCATAGTTTTCTTCGACGAAATCGACGCCATCGGTGGCGAGCGTTC
GGAGGGCGACGGATCCAGCTCTGGTTCGTCCGTAAAAGAGCGCGTCCTCA
CGCAACTGCTCACCGAACTGGATGGCGTGGAGGCACTGCAAAATGTCACC
ATAGTCGCTGCCACCAATCGTCCAGATATGATCGACAAGGCACTGCTTCG
TCCAGGCCGAATTGATCGAATTCTCTACGTGGGACTACCGCAATGTGAAG
CACGTAGAGAGATCTTAAAGATCAAACTGCGTGCCATGCCGATATCAAAC
GATGTGGACATGGAGAAGTTGGTGCAGCTGACGGAGGGATATTCCGGTGC
AGAAATACAAGCCGTATGCCATGAGGCTGCCCTGAGAGCCCTGGAGCAAA
GCTTCGAAGCGGAGGATGTCAAGTGGACGGACTTCGAGCACGCCTTGAAG
GCGGTGCCTCCGCGGACTTCTCCAGAGTTGTTGAAACTCTACGAAGATTA
CCTCAAACGGAAGTAGAAGCTTTCTAGACCAT
BS08114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 2400 | CG5776-PB | 1..2400 | 17..2416 | 12000 | 100 | Plus |
| CG5776-RA | 2400 | CG5776-PA | 1..2400 | 17..2416 | 12000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 48..2452 | 13..2417 | 12010 | 100 | Plus |
| CG5776-RA | 2912 | CG5776-RA | 48..2452 | 13..2417 | 12010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12701889..12703393 | 2417..913 | 7525 | 100 | Minus |
| 2L | 23513712 | 2L | 12703444..12703937 | 915..422 | 2470 | 100 | Minus |
| 2L | 23513712 | 2L | 12703995..12704404 | 422..13 | 2035 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:44:09 has no hits.
BS08114.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:09 Download gff for
BS08114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 24..2423 | 17..2416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:10 Download gff for
BS08114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 52..2451 | 17..2416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:58 Download gff for
BS08114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 52..2451 | 17..2416 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:58 Download gff for
BS08114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12701890..12703391 | 915..2416 | 100 | <- | Minus |
| 2L | 12703445..12703936 | 423..914 | 100 | <- | Minus |
| 2L | 12703995..12704400 | 17..422 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:10 Download gff for
BS08114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12701890..12703391 | 915..2416 | 100 | <- | Minus |
| arm_2L | 12703445..12703936 | 423..914 | 100 | <- | Minus |
| arm_2L | 12703995..12704400 | 17..422 | 100 | | Minus |
BS08114.pep Sequence
Translation from 16 to 2415
> BS08114.pep
MPPKSSSKKNQVTWYHCESCGVHIPSKARDNHEGLCFAISQDDVGPDSEA
EYVRSGAIYTRSLQQRNFEVESLKDLPTKYANMLVFVSEGAMQLAQLHIG
QHVVLEAPSTAEQPLVRIVWPTSEQFLTTVFVSEGDFKLHCTQLRGKLLK
ISALHPSRLTAAASISLKHVNTTETSLKSVQLQDAIALLKRDMVNRVFYK
DSLIHMNFFNKSLTFRLERWQSTVEEALAGLSLDSKPLQFIQVTNVTKLH
LITDDANQQEEEQKISHRITKCQIGGLDRQLQLVEESMEYALGFRTLPAG
LRVSRGLLLYGATGCGKSMVLEAMCAVAEERSQGHVQLIRINSGEVYSKF
LGETEQKLGAIFERAYNHYPHPTLLLIEDVHNLCPKQENSDLVKRVSLAF
LSLLDQLSSPSQLKGSKTFVLATSSQIDTLHPSIRRAGRLDNEVELGAPS
SQARLEIVRCLIKSVEHQLSDEEVEHVASITHGYVGADLANLVYAAMLQA
QPNPLQMPHLQAALTRIKPSAMREVLIECPNVQWSDIGGQSELRLAMQQA
IEWPLLHADKFQRLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFLSI
KGPELFSMWVGESERAVREVFRKARQVAPAIVFFDEIDAIGGERSEGDGS
SSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDMIDKALLRPGRID
RILYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQLTEGYSGAEIQAV
CHEAALRALEQSFEAEDVKWTDFEHALKAVPPRTSPELLKLYEDYLKRK*
BS08114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-PB | 799 | CG5776-PB | 1..799 | 1..799 | 4062 | 100 | Plus |
| CG5776-PA | 799 | CG5776-PA | 1..799 | 1..799 | 4062 | 100 | Plus |
| TER94-PD | 759 | CG2331-PD | 142..661 | 255..766 | 974 | 37.3 | Plus |
| TER94-PA | 801 | CG2331-PA | 184..703 | 255..766 | 974 | 37.3 | Plus |
| TER94-PE | 825 | CG2331-PE | 209..728 | 255..766 | 974 | 37.3 | Plus |
| TER94-PD | 759 | CG2331-PD | 156..388 | 532..769 | 501 | 41.2 | Plus |
| TER94-PA | 801 | CG2331-PA | 198..430 | 532..769 | 501 | 41.2 | Plus |
