Clone BS08116 Report

Search the DGRC for BS08116

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptP58IPK-RA
Protein status:BS08116.pep: full length peptide match
Sequenced Size:1529

Clone Sequence Records

BS08116.3prime Sequence

912 bp (794 high quality bases) assembled on 2006-01-06

> BS08116.3prime
ATGGTCTAGAAAGCTTCTAATTGAAGTGGAACTTGAACTGGAACGGCGAC
CCGTGTTGGAAGTGTCCAAACGGATGTTCGCCATGGAAGCCGCCACGCTG
ATTGCTCTCAGGATCTAATGGATCCTCGCCGTTGTCGAATTGACGACGCT
TCTCGGGATCCGTGAGAACCTCCTTGGCTGCGGCAATGTCAATAAACTTT
TTCTCGGCCACCTTCTTTTCCTCGTCGCGGAAGTTGTCCGGATGCCACTT
TTGCGCCGCCTTCCTGTAGGCCTTCACAATCTCCTGTTTGCTGGCGCTAC
GCTTAACGCCTAATATCTTATAGTAATCCCTGCGCTCTGACTGCTTCTGC
AGCTTCTTTGCCCTCTGGATGCCTTCTTTAGCGCGGGTGTTGCTCTCTTC
CAGGTCGAGAGCTGCTTGGAAGGAGTGTATGGCATCGTCGTACATTTCGG
TGCCCAGCAATGCGTCAGCACGATCACAGTAGACCTGAGCATCCTTCATA
ATATCCAGTGCCTCCTTGCACTGTTGCAAAGCCTTGCCAAACTGCTCGTC
GCCCGTGTAGCAAGTGCAGAGCACCTTGTGTCCCTCATACCGGATCATCG
TCTCCTCCGGCTCGTTACGCAGGACTGCCTCTCCGGCGGCTATGCACTCG
GCAAAATGCTTCTCCTCACGCGCTTGCTCTGCGTTAACCAGCTGCTTTTC
CACCTTTCGTAGTTTCTTGTAGAAGGGGAAGCAGAGCTTGTGTTCCGGGT
CGAACTTCAGGCACTCGCGGATCTCTTTTAAGGCATTTGTGGCGTGGCCA
ATTGTGTACAGCAGCTGTGCAATCTTGTAGTGACCCTCAGTGCTGTCCTG
GGTGAGTCGGTTCACCTGTCGCAAGTCAGCAATGGCTAACAGTGGATCAT
TGATTGCAATGT

BS08116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8286-PA 1497 CG8286-RA 602..1497 912..17 4480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 2217 CG8286-RA 1023..1918 912..17 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9588387..9589282 912..17 4480 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:47:59 has no hits.

BS08116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:00 Download gff for BS08116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 602..1497 17..912 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:15 Download gff for BS08116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 602..1497 17..912 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:03:21 Download gff for BS08116.3prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 1023..1923 13..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:15 Download gff for BS08116.3prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 1023..1923 13..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:15 Download gff for BS08116.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9588387..9589287 13..912 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:03:21 Download gff for BS08116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5414109..5415009 13..912 99   Minus

BS08116.5prime Sequence

777 bp (335 high quality bases) assembled on 2006-01-06

> BS08116.5prime
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAACGGGGTGTTGTGCACATGAGGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAAGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCGCTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCACGACAGCACTGAGGGTCAC
TACAAGATTGCTCAGCTGCTGTACACAATTGGCCACGCCACATATGCCTT
ATAAGAGATCCGCGAGTGCCTGATGTT

BS08116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8286-PA 1497 CG8286-RA 1..757 17..773 3585 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 2217 CG8286-RA 417..1182 12..777 3680 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9587996..9588546 227..777 2620 98.4 Plus
3R 32079331 3R 9587521..9587636 112..227 580 100 Plus
3R 32079331 3R 9587358..9587460 12..114 500 99 Plus
Blast to na_te.dros performed on 2015-02-11 17:51:50 has no hits.

BS08116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:02 Download gff for BS08116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 1..761 17..777 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:16 Download gff for BS08116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 1..761 17..777 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:00 Download gff for BS08116.5prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 415..1182 9..777 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:19 Download gff for BS08116.5prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 415..1182 9..777 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:19 Download gff for BS08116.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9587356..9587459 9..113 98 -> Plus
3R 9587523..9587636 114..227 100 -> Plus
3R 9587997..9588546 228..777 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:00 Download gff for BS08116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5413078..5413181 9..113 98 -> Plus
arm_3R 5413245..5413358 114..227 100 -> Plus
arm_3R 5413719..5414268 228..777 98   Plus

BS08116.complete Sequence

1529 bp assembled on 2010-11-23

GenBank Submission: KX804684

> BS08116.complete
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAGCGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAGGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCACTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCAGGACAGCACTGAGGGTCAC
TACAAGATTGCACAGCTGCTGTACACAATTGGCCACGCCACAAATGCCTT
AAAAGAGATCCGCGAGTGCCTGAAGTTCGACCCGGAACACAAGCTCTGCT
TCCCCTTCTACAAGAAACTACGAAAGGTGGAAAAGCAGCTGGTTAACGCA
GAGCAAGCGCGTGAGGAGAAGCATTTTGCCGAGTGCATAGCCGCCGGAGA
GGCAGTCCTGCGTAACGAGCCGGAGGAGACGATGATCCGGTATGAGGGAC
ACAAGGTGCTCTGCACTTGCTACACGGGCGACGAGCAGTTTGGCAAGGCT
TTGCAACAGTGCAAGGAGGCACTGGATATTATGAAGGATGCTCAGGTCTA
CTGTGATCGTGCTGACGCATTGCTGGGCACCGAAATGTACGACGATGCCA
TACACTCCTTCCAAGCAGCTCTCGACCTGGAAGAGAGCAACACCCGCGCT
AAAGAAGGCATCCAGAGGGCAAAGAAGCTGCAGAAGCAGTCAGAGCGCAG
GGATTACTATAAGATATTAGGCGTTAAGCGTAGCGCCAGCAAACAGGAGA
TTGTGAAGGCCTACAGGAAGGCGGCGCAAAAGTGGCATCCGGACAACTTC
CGCGACGAGGAAAAGAAGGTGGCCGAGAAAAAGTTTATTGACATTGCCGC
AGCCAAGGAGGTTCTCACGGATCCCGAGAAGCGTCGTCAATTCGACAACG
GCGAGGATCCATTAGATCCTGAGAGCAATCAGCGTGGCGGCTTCCATGGC
GAACATCCGTTTGGACACTTCCAACACGGGTCGCCGTTCCAGTTCAAGTT
CCACTTCAATTAGAAGCTTTCTAGACCAT

BS08116.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 1497 CG8286-PA 1..1497 17..1513 7485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 2217 CG8286-RA 417..1918 12..1513 7495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9587996..9589282 227..1513 6435 100 Plus
3R 32079331 3R 9587521..9587636 112..227 580 100 Plus
3R 32079331 3R 9587358..9587460 12..114 500 99 Plus
Blast to na_te.dros performed on 2014-11-26 15:36:26 has no hits.

BS08116.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-23 19:04:26 Download gff for BS08116.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 425..1921 17..1513 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:34 Download gff for BS08116.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 422..1918 17..1513 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:41 Download gff for BS08116.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 422..1918 17..1513 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:41 Download gff for BS08116.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9587363..9587459 17..113 100 -> Plus
3R 9587523..9587636 114..227 100 -> Plus
3R 9587997..9589282 228..1513 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:34 Download gff for BS08116.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5413085..5413181 17..113 100 -> Plus
arm_3R 5413245..5413358 114..227 100 -> Plus
arm_3R 5413719..5415004 228..1513 100   Plus

BS08116.pep Sequence

Translation from 16 to 1512

> BS08116.pep
MALPLSDLLMIGGGEKKLAACLVLLLLELFLEGAESTASPADIENHLELG
KEFLARGQLSDALTHYHAAVEGDANNYLTLFKRGTVYLALGKTRFAVQDF
SRVLELKPDFMAARIQRGVVHMKSGEYEQAIQDFDQVLQEEPNNGLVLEH
YSRLAPAQEQWVLVQQLIQYSDHQNAIPMITQLLEISPWAVPFRQARSDA
YIAINDPLLAIADLRQVNRLTQDSTEGHYKIAQLLYTIGHATNALKEIRE
CLKFDPEHKLCFPFYKKLRKVEKQLVNAEQAREEKHFAECIAAGEAVLRN
EPEETMIRYEGHKVLCTCYTGDEQFGKALQQCKEALDIMKDAQVYCDRAD
ALLGTEMYDDAIHSFQAALDLEESNTRAKEGIQRAKKLQKQSERRDYYKI
LGVKRSASKQEIVKAYRKAAQKWHPDNFRDEEKKVAEKKFIDIAAAKEVL
TDPEKRRQFDNGEDPLDPESNQRGGFHGEHPFGHFQHGSPFQFKFHFN*

BS08116.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-PA 498 CG8286-PA 1..498 1..498 2592 100 Plus
Tpr2-PC 478 CG4599-PC 1..478 25..495 289 22.7 Plus
Tpr2-PE 464 CG4599-PE 6..464 44..495 271 22.6 Plus
Tpr2-PB 464 CG4599-PB 6..464 44..495 271 22.6 Plus
Tpr2-PD 508 CG4599-PD 50..508 44..495 271 22.6 Plus