Clone Sequence Records
BS08116.3prime Sequence
912 bp (794 high quality bases) assembled on 2006-01-06
> BS08116.3prime
ATGGTCTAGAAAGCTTCTAATTGAAGTGGAACTTGAACTGGAACGGCGAC
CCGTGTTGGAAGTGTCCAAACGGATGTTCGCCATGGAAGCCGCCACGCTG
ATTGCTCTCAGGATCTAATGGATCCTCGCCGTTGTCGAATTGACGACGCT
TCTCGGGATCCGTGAGAACCTCCTTGGCTGCGGCAATGTCAATAAACTTT
TTCTCGGCCACCTTCTTTTCCTCGTCGCGGAAGTTGTCCGGATGCCACTT
TTGCGCCGCCTTCCTGTAGGCCTTCACAATCTCCTGTTTGCTGGCGCTAC
GCTTAACGCCTAATATCTTATAGTAATCCCTGCGCTCTGACTGCTTCTGC
AGCTTCTTTGCCCTCTGGATGCCTTCTTTAGCGCGGGTGTTGCTCTCTTC
CAGGTCGAGAGCTGCTTGGAAGGAGTGTATGGCATCGTCGTACATTTCGG
TGCCCAGCAATGCGTCAGCACGATCACAGTAGACCTGAGCATCCTTCATA
ATATCCAGTGCCTCCTTGCACTGTTGCAAAGCCTTGCCAAACTGCTCGTC
GCCCGTGTAGCAAGTGCAGAGCACCTTGTGTCCCTCATACCGGATCATCG
TCTCCTCCGGCTCGTTACGCAGGACTGCCTCTCCGGCGGCTATGCACTCG
GCAAAATGCTTCTCCTCACGCGCTTGCTCTGCGTTAACCAGCTGCTTTTC
CACCTTTCGTAGTTTCTTGTAGAAGGGGAAGCAGAGCTTGTGTTCCGGGT
CGAACTTCAGGCACTCGCGGATCTCTTTTAAGGCATTTGTGGCGTGGCCA
ATTGTGTACAGCAGCTGTGCAATCTTGTAGTGACCCTCAGTGCTGTCCTG
GGTGAGTCGGTTCACCTGTCGCAAGTCAGCAATGGCTAACAGTGGATCAT
TGATTGCAATGT
BS08116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8286-PA | 1497 | CG8286-RA | 602..1497 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 2217 | CG8286-RA | 1023..1918 | 912..17 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9588387..9589282 | 912..17 | 4480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:47:59 has no hits.
BS08116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:00 Download gff for
BS08116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 602..1497 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:15 Download gff for
BS08116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 602..1497 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:03:21 Download gff for
BS08116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 1023..1923 | 13..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:15 Download gff for
BS08116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 1023..1923 | 13..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:15 Download gff for
BS08116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9588387..9589287 | 13..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:03:21 Download gff for
BS08116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5414109..5415009 | 13..912 | 99 | | Minus |
BS08116.5prime Sequence
777 bp (335 high quality bases) assembled on 2006-01-06
> BS08116.5prime
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAACGGGGTGTTGTGCACATGAGGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAAGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCGCTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCACGACAGCACTGAGGGTCAC
TACAAGATTGCTCAGCTGCTGTACACAATTGGCCACGCCACATATGCCTT
ATAAGAGATCCGCGAGTGCCTGATGTT
BS08116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8286-PA | 1497 | CG8286-RA | 1..757 | 17..773 | 3585 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 2217 | CG8286-RA | 417..1182 | 12..777 | 3680 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9587996..9588546 | 227..777 | 2620 | 98.4 | Plus |
3R | 32079331 | 3R | 9587521..9587636 | 112..227 | 580 | 100 | Plus |
3R | 32079331 | 3R | 9587358..9587460 | 12..114 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:51:50 has no hits.
BS08116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:02 Download gff for
BS08116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 1..761 | 17..777 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:16 Download gff for
BS08116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 1..761 | 17..777 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:00 Download gff for
BS08116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 415..1182 | 9..777 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:19 Download gff for
BS08116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 415..1182 | 9..777 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:19 Download gff for
BS08116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9587356..9587459 | 9..113 | 98 | -> | Plus |
3R | 9587523..9587636 | 114..227 | 100 | -> | Plus |
3R | 9587997..9588546 | 228..777 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:00 Download gff for
BS08116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5413078..5413181 | 9..113 | 98 | -> | Plus |
arm_3R | 5413245..5413358 | 114..227 | 100 | -> | Plus |
arm_3R | 5413719..5414268 | 228..777 | 98 | | Plus |
BS08116.complete Sequence
1529 bp assembled on 2010-11-23
GenBank Submission: KX804684
> BS08116.complete
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAGCGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAGGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCACTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCAGGACAGCACTGAGGGTCAC
TACAAGATTGCACAGCTGCTGTACACAATTGGCCACGCCACAAATGCCTT
AAAAGAGATCCGCGAGTGCCTGAAGTTCGACCCGGAACACAAGCTCTGCT
TCCCCTTCTACAAGAAACTACGAAAGGTGGAAAAGCAGCTGGTTAACGCA
GAGCAAGCGCGTGAGGAGAAGCATTTTGCCGAGTGCATAGCCGCCGGAGA
GGCAGTCCTGCGTAACGAGCCGGAGGAGACGATGATCCGGTATGAGGGAC
ACAAGGTGCTCTGCACTTGCTACACGGGCGACGAGCAGTTTGGCAAGGCT
TTGCAACAGTGCAAGGAGGCACTGGATATTATGAAGGATGCTCAGGTCTA
CTGTGATCGTGCTGACGCATTGCTGGGCACCGAAATGTACGACGATGCCA
TACACTCCTTCCAAGCAGCTCTCGACCTGGAAGAGAGCAACACCCGCGCT
AAAGAAGGCATCCAGAGGGCAAAGAAGCTGCAGAAGCAGTCAGAGCGCAG
GGATTACTATAAGATATTAGGCGTTAAGCGTAGCGCCAGCAAACAGGAGA
TTGTGAAGGCCTACAGGAAGGCGGCGCAAAAGTGGCATCCGGACAACTTC
CGCGACGAGGAAAAGAAGGTGGCCGAGAAAAAGTTTATTGACATTGCCGC
AGCCAAGGAGGTTCTCACGGATCCCGAGAAGCGTCGTCAATTCGACAACG
GCGAGGATCCATTAGATCCTGAGAGCAATCAGCGTGGCGGCTTCCATGGC
GAACATCCGTTTGGACACTTCCAACACGGGTCGCCGTTCCAGTTCAAGTT
CCACTTCAATTAGAAGCTTTCTAGACCAT
BS08116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 1497 | CG8286-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 2217 | CG8286-RA | 417..1918 | 12..1513 | 7495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9587996..9589282 | 227..1513 | 6435 | 100 | Plus |
3R | 32079331 | 3R | 9587521..9587636 | 112..227 | 580 | 100 | Plus |
3R | 32079331 | 3R | 9587358..9587460 | 12..114 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:36:26 has no hits.
BS08116.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-23 19:04:26 Download gff for
BS08116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 425..1921 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:34 Download gff for
BS08116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 422..1918 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:41 Download gff for
BS08116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 422..1918 | 17..1513 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:41 Download gff for
BS08116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9587363..9587459 | 17..113 | 100 | -> | Plus |
3R | 9587523..9587636 | 114..227 | 100 | -> | Plus |
3R | 9587997..9589282 | 228..1513 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:34 Download gff for
BS08116.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5413085..5413181 | 17..113 | 100 | -> | Plus |
arm_3R | 5413245..5413358 | 114..227 | 100 | -> | Plus |
arm_3R | 5413719..5415004 | 228..1513 | 100 | | Plus |
BS08116.pep Sequence
Translation from 16 to 1512
> BS08116.pep
MALPLSDLLMIGGGEKKLAACLVLLLLELFLEGAESTASPADIENHLELG
KEFLARGQLSDALTHYHAAVEGDANNYLTLFKRGTVYLALGKTRFAVQDF
SRVLELKPDFMAARIQRGVVHMKSGEYEQAIQDFDQVLQEEPNNGLVLEH
YSRLAPAQEQWVLVQQLIQYSDHQNAIPMITQLLEISPWAVPFRQARSDA
YIAINDPLLAIADLRQVNRLTQDSTEGHYKIAQLLYTIGHATNALKEIRE
CLKFDPEHKLCFPFYKKLRKVEKQLVNAEQAREEKHFAECIAAGEAVLRN
EPEETMIRYEGHKVLCTCYTGDEQFGKALQQCKEALDIMKDAQVYCDRAD
ALLGTEMYDDAIHSFQAALDLEESNTRAKEGIQRAKKLQKQSERRDYYKI
LGVKRSASKQEIVKAYRKAAQKWHPDNFRDEEKKVAEKKFIDIAAAKEVL
TDPEKRRQFDNGEDPLDPESNQRGGFHGEHPFGHFQHGSPFQFKFHFN*
BS08116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-PA | 498 | CG8286-PA | 1..498 | 1..498 | 2592 | 100 | Plus |
Tpr2-PC | 478 | CG4599-PC | 1..478 | 25..495 | 289 | 22.7 | Plus |
Tpr2-PE | 464 | CG4599-PE | 6..464 | 44..495 | 271 | 22.6 | Plus |
Tpr2-PB | 464 | CG4599-PB | 6..464 | 44..495 | 271 | 22.6 | Plus |
Tpr2-PD | 508 | CG4599-PD | 50..508 | 44..495 | 271 | 22.6 | Plus |