Clone Sequence Records
BS08117.3prime Sequence
920 bp (830 high quality bases) assembled on 2006-01-06
> BS08117.3prime
ATGGTCTAGAAAGCTTTCAGGAACGCGATGATCCGCCCATGGAGCCGGAC
CCGGAGCCGCCGCCAGCCATGCGCCGCTTCTTTTTCTTCTTGGCCGTCAG
ACTCTCCTGGCCGCTGTCCGTGTTGGAATCGCCGCCATCGTCGCTCTCCT
CCTCCTCCGAAGACGAGGAGCTGCTCGACGAGGAGGAGCTTGAATTGCTG
GAGCTGTCCGATGCGAAGCCGGTGCTCTCGTTCAGGTTAATACTATCGGC
GATCTGGGCCAGCTCCGGTCGCTGGTCTCGCAGCACGCGCAGCCACTTGC
GTGACAACTTTGGCCGGCCGCGAACAGTCTTGTGCCAGACGCAGGGGAAG
TTCGTCTGCGAACTGAAGTTCTGGGTGATGGCAATGGTGTCGTCCATGTT
GAGCACCACGTGCCACCAGCCGCCGGGCACGAATACAGTCTCGCCTGCTC
CCTGCAGCACTTCGATGGGGCGGTATTGCTCCGGCCAACTAGGCAGCTGG
GTGCGCGGATATATGGTGCTGAACCAGGTGATGGCCTCGTCTCGCTGCTT
GCCACCCATGGCACTGGTGACCTTGAGCAGCTCCTTGGGCGTTTGGGTGG
GGAACAGGCACCAGCGCTTGTGGCCGCGGATCAGCGTGTTCCAGGCACTA
GTGCCCAGTGGATCAATGTGGATGCCGGTGCCGGAGCGAGCCGGTCCCAT
GACAAACCAGCGGTAAGGCGGACGACGATTCTCGCCGCAGTACTGGAAGA
GGTCGTCGCGAAAATACTTGGGCACCACATAGTCATCCAGGAGCTTGCGC
CGACGATGGTGTTCGCCGAAGCTGCTGTCGAAGATGTACAGCGGGCTGTC
ATCGCGCGTGCTCTGCATGTACTCCACGTAGTACTTCATCTTCATCTTGA
CGCTATAGCCCTCGTTGTCC
BS08117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5383-PA | 1227 | PSR-RA | 324..1227 | 920..17 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1590 | CG5383-RB | 400..1303 | 920..17 | 4520 | 100 | Minus |
| PSR-RA | 1590 | CG5383-RA | 400..1303 | 920..17 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22361069..22361972 | 17..920 | 4520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:42:50 has no hits.
BS08117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:03 Download gff for
BS08117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-PA | 324..1227 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:17 Download gff for
BS08117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5383-PA | 324..1227 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:34 Download gff for
BS08117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 400..1303 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:15 Download gff for
BS08117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 400..1303 | 17..920 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:15 Download gff for
BS08117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22361069..22361972 | 17..920 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:34 Download gff for
BS08117.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18186791..18187694 | 17..920 | 100 | | Plus |
BS08117.5prime Sequence
882 bp (804 high quality bases) assembled on 2006-01-06
> BS08117.5prime
GAAGTTATCAGTCGACATGAGCGAGGAATTCAAGCTGCCCAAGCGTTCCC
GCAAGCGCACACGTGAGGTGAAGCGCAAGGCTCGTCCGGAGCTGGACGGC
GAGAATGCCTGGTCGGCCATGCGGTACTGTGAGAAGTTCGAGCCATTTTG
GGATTTCACCGATAACCTGGAGCGGATCGAGGAGTCGCAGGTGCCGGAGT
CGGAGTTCATCGAACGCTTCGAGCGACCCTACAAGCCGGTGGTCATTCGC
GGCTGCACCGATGGCTGGTTGGCGCTGGAAAAGTGGACACTAGCCCGCCT
GGCCAAGAAGTATCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGAGG
GCTATAGCGTCAAGATGAAGATGAAGTACTACGTGGAGTACATGCAGAGC
ACGCGCGATGACAGCCCGCTGTACATCTTCGACAGCAGCTTCGGCGAACA
CCATCGTCGGCGCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTC
GCGACGACCTCTTCCAGTACTGCGGCGAGAATCGTCGTCCGCCTTACCGC
TGGTTTGTCATGGGACCGGCTCGCTCCGGCACCGGCATCCACATTGATCC
ACTGGGCACTAGTGCCTGGAACACGCTGATCCGCGGCCACAAGCGCTGGT
GCCTGTTCCCCACCCAAACGCCCAAGGAGCTGCTCAAGGTCACCAGTGCC
ATGGGTGGCAAGCAGCGAGACGAGGCCATCACCTGGTTCAGCACCATATA
TCCGCGCACCCAGCTGCCTAGTTGGCCGGAGCAATACCGCCCCATCGAAG
TGCTGCAAGGAGCAGGCGAGACTGTATTCGTGCCCGGCGGCTGGTGGCAC
GTGGTGCTCAACATGGACGACACCATTTGCAT
BS08117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5383-PA | 1227 | PSR-RA | 1..861 | 17..877 | 4280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1590 | CG5383-RB | 77..937 | 17..877 | 4290 | 99.9 | Plus |
| PSR-RA | 1590 | CG5383-RA | 77..937 | 17..877 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22361435..22362295 | 877..17 | 4290 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:40:23 has no hits.
BS08117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:04 Download gff for
BS08117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:18 Download gff for
BS08117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5383-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:15:49 Download gff for
BS08117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 69..942 | 8..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:58 Download gff for
BS08117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 69..942 | 8..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:58 Download gff for
BS08117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22361430..22362303 | 8..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:15:49 Download gff for
BS08117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18187152..18188025 | 8..882 | 99 | | Minus |
BS08117.complete Sequence
1259 bp (1259 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636103
> BS08117.complete
GAAGTTATCAGTCGACATGAGCGAGGAATTCAAGCTGCCCAAGCGTTCCC
GCAAGCGCACACGTGAGGTGAAGCGCAAGGCTCGTCCGGAGCTGGACGGC
GAGAATGCCTGGTCGGCCATGCGGTACTGTGAGAAGTTCGAGCCATTTTG
GGATTTCACCGATAACCTGGAGCGGATCGAGGAGTCGCAGGTGCCGGAGT
CGGAGTTCATCGAACGCTTCGAGCGACCCTACAAGCCGGTGGTCATTCGC
GGCTGCACCGATGGCTGGTTGGCGCTGGAAAAGTGGACACTAGCCCGCCT
GGCCAAGAAGTATCGCAACCAGAAGTTCAAGTGCGGCGAGGACAACGAGG
GCTATAGCGTCAAGATGAAGATGAAGTACTACGTGGAGTACATGCAGAGC
ACGCGCGATGACAGCCCGCTGTACATCTTCGACAGCAGCTTCGGCGAACA
CCATCGTCGGCGCAAGCTCCTGGATGACTATGTGGTGCCCAAGTATTTTC
GCGACGACCTCTTCCAGTACTGCGGCGAGAATCGTCGTCCGCCTTACCGC
TGGTTTGTCATGGGACCGGCTCGCTCCGGCACCGGCATCCACATTGATCC
ACTGGGCACTAGTGCCTGGAACACGCTGATCCGCGGCCACAAGCGCTGGT
GCCTGTTCCCCACCCAAACGCCCAAGGAGCTGCTCAAGGTCACCAGTGCC
ATGGGTGGCAAGCAGCGAGACGAGGCCATCACCTGGTTCAGCACCATATA
TCCGCGCACCCAGCTGCCTAGTTGGCCGGAGCAATACCGCCCCATCGAAG
TGCTGCAGGGAGCAGGCGAGACTGTATTCGTGCCCGGCGGCTGGTGGCAC
GTGGTGCTCAACATGGACGACACCATTGCCATCACCCAGAACTTCAGTTC
GCAGACGAACTTCCCCTGCGTCTGGCACAAGACTGTTCGCGGCCGGCCAA
AGTTGTCACGCAAGTGGCTGCGCGTGCTGCGAGACCAGCGACCGGAGCTG
GCCCAGATCGCCGATAGTATTAACCTGAACGAGAGCACCGGCTTCGCATC
GGACAGCTCCAGCAATTCAAGCTCCTCCTCGTCGAGCAGCTCCTCGTCTT
CGGAGGAGGAGGAGAGCGACGATGGCGGCGATTCCAACACGGACAGCGGC
CAGGAGAGTCTGACGGCCAAGAAGAAAAAGAAGCGGCGCATGGCTGGCGG
CGGCTCCGGGTCCGGCTCCATGGGCGGATCATCGCGTTCCTGAAAGCTTT
CTAGACCAT
BS08117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1326 | CG5383-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
| PSR-RA | 1227 | CG5383-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-RB | 1590 | CG5383-RB | 77..1303 | 17..1243 | 6135 | 100 | Plus |
| PSR-RA | 1590 | CG5383-RA | 77..1303 | 17..1243 | 6135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22361069..22362295 | 1243..17 | 6135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:10:02 has no hits.
BS08117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:17 Download gff for
BS08117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 1..1227 | 17..1243 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:23 Download gff for
BS08117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 231..1465 | 8..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:10 Download gff for
BS08117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 77..1302 | 17..1242 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:17 Download gff for
BS08117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 231..1465 | 8..1243 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:15 Download gff for
BS08117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PSR-RA | 77..1302 | 17..1242 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:15 Download gff for
BS08117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22361070..22362295 | 17..1242 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:10 Download gff for
BS08117.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18186792..18188017 | 17..1242 | 100 | | Minus |
BS08117.pep Sequence
Translation from 16 to 1242
> BS08117.pep
MSEEFKLPKRSRKRTREVKRKARPELDGENAWSAMRYCEKFEPFWDFTDN
LERIEESQVPESEFIERFERPYKPVVIRGCTDGWLALEKWTLARLAKKYR
NQKFKCGEDNEGYSVKMKMKYYVEYMQSTRDDSPLYIFDSSFGEHHRRRK
LLDDYVVPKYFRDDLFQYCGENRRPPYRWFVMGPARSGTGIHIDPLGTSA
WNTLIRGHKRWCLFPTQTPKELLKVTSAMGGKQRDEAITWFSTIYPRTQL
PSWPEQYRPIEVLQGAGETVFVPGGWWHVVLNMDDTIAITQNFSSQTNFP
CVWHKTVRGRPKLSRKWLRVLRDQRPELAQIADSINLNESTGFASDSSSN
SSSSSSSSSSSSEEEESDDGGDSNTDSGQESLTAKKKKKRRMAGGGSGSG
SMGGSSRS*
BS08117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PSR-PB | 441 | CG5383-PB | 1..408 | 1..408 | 2196 | 100 | Plus |
| PSR-PA | 408 | CG5383-PA | 1..408 | 1..408 | 2196 | 100 | Plus |
| CG7200-PB | 425 | CG7200-PB | 174..309 | 155..303 | 204 | 34.4 | Plus |
| CG7200-PA | 425 | CG7200-PA | 174..309 | 155..303 | 204 | 34.4 | Plus |
