Clone Sequence Records
BS08126.3prime Sequence
931 bp (772 high quality bases) assembled on 2006-01-06
> BS08126.3prime
ATGGTCTAGAAAGCTTTTAATTGGCGGCTATCGTGCAGACACAGCAACTG
GGAAACCAGAACGTGTCCGTGTACAGATTCTGCCCGTTGCCCTGGAGCGC
AATTAAGCGTTTTTGCACAAACTTCTGCTCGCATCTCGAGTTGTAGCCGT
TGGGCAATTCGCACAGGTTCGAGCAGGTGTTCGAGGCGCAAAGCTCCGCC
TTGACCATTTGGCGAGCGGTGTTCTGCTCGTTGACCACAAACATCCAGTT
TCCGCGGCTATTCAGTGCCGCCTGCGGGGTGATGAACTGCGATGTCGTCT
GGCAGAGGGTGGAGCGCCCCGGACTTTGGCGCTTTGTCCTCGAACGCTTC
TTCAGCGGATTGGGGGCTTCCACGCCCACGATATCCAAGAGATCCATGTT
GAGCGAGACATCGCGCTTGCTTTGTGGGTGATCCTCTGCCGGGTTGTCCT
GTTCCTCGGCCTCCTCTGTCTGCTCGTTCACCGGCTCCACCACCTCCGCT
TGAACCTCGTCGGGTTGCCTCTGCTTCCGACTGAGATCCCTGACCAAGCG
CTTCAGCCAGAGCGTGGCATTGTAGGGAGTCGACTTGTCACTCTGATTGA
TGTACAAGTGACCGCCAGAAGATGAGGTGCCTCCGCCCTGGGAGTTATAC
CGGTGACCCGAGCGATGACCTCCACCGGAGGAGGTGTACAGAAGATACGT
GGGTGCTTCCGTAGAGGGATTGCTGACAAAGAGCGGGTTTCCACCCCCAG
ACGGTCTCTGGGGATTACCTCCGAAGGGTGTCTGATAACTATATCCATTA
AAGTCCTGGGCAGCGGGATCCCGGGGCGGGAAGATGGACTTGGGATCGTA
GAAGACGGGAGTATCGTGCCACGCCACAGCCGCAAAATCTTCCCAGGTTT
CGTCCACAACAGAGTGGCGGCCTCATAGCCC
BS08126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9972-PA | 1164 | CG9972-RA | 274..1164 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1996 | CG9972-RA | 631..1547 | 931..16 | 4560 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2885896..2886408 | 186..698 | 2565 | 100 | Plus |
3L | 28110227 | 3L | 2886686..2886922 | 696..931 | 1135 | 99.6 | Plus |
3L | 28110227 | 3L | 2884090..2884259 | 16..185 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:39:31 has no hits.
BS08126.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:16 Download gff for
BS08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 249..1164 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:32 Download gff for
BS08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 249..1164 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:58:11 Download gff for
BS08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 631..1556 | 6..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:38:15 Download gff for
BS08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 631..1556 | 6..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:38:15 Download gff for
BS08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2884081..2884259 | 6..185 | 97 | <- | Plus |
3L | 2885896..2886408 | 186..698 | 100 | <- | Plus |
3L | 2886689..2886922 | 699..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:58:11 Download gff for
BS08126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2886689..2886922 | 699..931 | 99 | | Plus |
arm_3L | 2884081..2884259 | 6..185 | 97 | <- | Plus |
arm_3L | 2885896..2886408 | 186..698 | 100 | <- | Plus |
BS08126.5prime Sequence
914 bp (827 high quality bases) assembled on 2006-01-06
> BS08126.5prime
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCAGACG
ACATCGCAGTTCAT
BS08126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9972-PA | 1164 | CG9972-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1996 | CG9972-RA | 383..1281 | 17..914 | 4470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2885992..2886408 | 914..499 | 2035 | 99.8 | Minus |
3L | 28110227 | 3L | 2886686..2886952 | 501..235 | 1335 | 100 | Minus |
3L | 28110227 | 3L | 2888888..2889045 | 236..79 | 790 | 100 | Minus |
3L | 28110227 | 3L | 2889101..2889163 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:50:05 has no hits.
BS08126.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:17 Download gff for
BS08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:34 Download gff for
BS08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 1..899 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:07 Download gff for
BS08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 372..1281 | 7..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:00 Download gff for
BS08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 372..1281 | 7..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:00 Download gff for
BS08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
3L | 2889101..2889174 | 7..79 | 94 | | Minus |
3L | 2885992..2886408 | 499..914 | 99 | <- | Minus |
3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:07 Download gff for
BS08126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2885992..2886408 | 499..914 | 99 | <- | Minus |
arm_3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
arm_3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
arm_3L | 2889101..2889174 | 7..79 | 94 | | Minus |
BS08126.complete Sequence
1196 bp (1196 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636104
> BS08126.complete
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCCAGAC
GACATCGCAGTTCATCACCCCGCAGGCGGCACTGAATAGCCGCGGAAACT
GGATGTTTGTGGTCAACGAGCAGAACACCGCTCGCCAAATGGTCAAGGCG
GAGCTTTGCGCCTCGAACACCTGCTCGAACCTGTGCGAATTGCCCAACGG
CTACAACTCGAGATGCGAGCAGAAGTTTGTGCAAAAACGCTTAATTGCGC
TCCAGGGCAACGGGCAGAATCTGTACACGGACACGTTCTGGTTTCCCAGT
TGCTGTGTCTGCACGATAGCCGCCAATTAAAAGCTTTCTAGACCAT
BS08126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1164 | CG9972-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1996 | CG9972-RA | 383..1547 | 17..1181 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2885896..2886408 | 1011..499 | 2565 | 100 | Minus |
3L | 28110227 | 3L | 2886686..2886952 | 501..235 | 1335 | 100 | Minus |
3L | 28110227 | 3L | 2884090..2884259 | 1181..1012 | 850 | 100 | Minus |
3L | 28110227 | 3L | 2888888..2889045 | 236..79 | 790 | 100 | Minus |
3L | 28110227 | 3L | 2889101..2889163 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:52:23 has no hits.
BS08126.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:18 Download gff for
BS08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:25 Download gff for
BS08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-RA | 370..1554 | 7..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:01 Download gff for
BS08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 383..1544 | 17..1178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:18 Download gff for
BS08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-RA | 370..1554 | 7..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:03 Download gff for
BS08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 383..1544 | 17..1178 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:03 Download gff for
BS08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2884093..2884259 | 1012..1178 | 100 | <- | Minus |
3L | 2885896..2886408 | 499..1011 | 100 | <- | Minus |
3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
3L | 2889101..2889163 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:01 Download gff for
BS08126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2884093..2884259 | 1012..1178 | 100 | <- | Minus |
arm_3L | 2885896..2886408 | 499..1011 | 100 | <- | Minus |
arm_3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
arm_3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
arm_3L | 2889101..2889163 | 17..79 | 100 | | Minus |
BS08126.pep Sequence
Translation from 16 to 1179
> BS08126.pep
MTKSIKRPPPFSCKQVLLTYVILAYTVAAHSSPPPCGLYGAPPCQFLPAP
PGQTPTCARPGKTYCEHADNYPTYLIKSLVRKWGYEAATLLVDETWEDFA
AVAWHDTPVFYDPKSIFPPRDPAAQDFNGYSYQTPFGGNPQRPSGGGNPL
FVSNPSTEAPTYLLYTSSGGGHRSGHRYNSQGGGTSSSGGHLYINQSDKS
TPYNATLWLKRLVRDLSRKQRQPDEVQAEVVEPVNEQTEEAEEQDNPAED
HPQSKRDVSLNMDLLDIVGVEAPNPLKKRSRTKRQSPGRSTLCQTTSQFI
TPQAALNSRGNWMFVVNEQNTARQMVKAELCASNTCSNLCELPNGYNSRC
EQKFVQKRLIALQGNGQNLYTDTFWFPSCCVCTIAAN*
BS08126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-PA | 387 | CG9972-PA | 1..387 | 1..387 | 2110 | 100 | Plus |