Clone BS08126 Report

Search the DGRC for BS08126

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptspz5-RA
Protein status:BS08126.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08126.3prime Sequence

931 bp (772 high quality bases) assembled on 2006-01-06

> BS08126.3prime
ATGGTCTAGAAAGCTTTTAATTGGCGGCTATCGTGCAGACACAGCAACTG
GGAAACCAGAACGTGTCCGTGTACAGATTCTGCCCGTTGCCCTGGAGCGC
AATTAAGCGTTTTTGCACAAACTTCTGCTCGCATCTCGAGTTGTAGCCGT
TGGGCAATTCGCACAGGTTCGAGCAGGTGTTCGAGGCGCAAAGCTCCGCC
TTGACCATTTGGCGAGCGGTGTTCTGCTCGTTGACCACAAACATCCAGTT
TCCGCGGCTATTCAGTGCCGCCTGCGGGGTGATGAACTGCGATGTCGTCT
GGCAGAGGGTGGAGCGCCCCGGACTTTGGCGCTTTGTCCTCGAACGCTTC
TTCAGCGGATTGGGGGCTTCCACGCCCACGATATCCAAGAGATCCATGTT
GAGCGAGACATCGCGCTTGCTTTGTGGGTGATCCTCTGCCGGGTTGTCCT
GTTCCTCGGCCTCCTCTGTCTGCTCGTTCACCGGCTCCACCACCTCCGCT
TGAACCTCGTCGGGTTGCCTCTGCTTCCGACTGAGATCCCTGACCAAGCG
CTTCAGCCAGAGCGTGGCATTGTAGGGAGTCGACTTGTCACTCTGATTGA
TGTACAAGTGACCGCCAGAAGATGAGGTGCCTCCGCCCTGGGAGTTATAC
CGGTGACCCGAGCGATGACCTCCACCGGAGGAGGTGTACAGAAGATACGT
GGGTGCTTCCGTAGAGGGATTGCTGACAAAGAGCGGGTTTCCACCCCCAG
ACGGTCTCTGGGGATTACCTCCGAAGGGTGTCTGATAACTATATCCATTA
AAGTCCTGGGCAGCGGGATCCCGGGGCGGGAAGATGGACTTGGGATCGTA
GAAGACGGGAGTATCGTGCCACGCCACAGCCGCAAAATCTTCCCAGGTTT
CGTCCACAACAGAGTGGCGGCCTCATAGCCC

BS08126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9972-PA 1164 CG9972-RA 274..1164 907..17 4455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1996 CG9972-RA 631..1547 931..16 4560 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2885896..2886408 186..698 2565 100 Plus
3L 28110227 3L 2886686..2886922 696..931 1135 99.6 Plus
3L 28110227 3L 2884090..2884259 16..185 850 100 Plus
Blast to na_te.dros performed on 2015-02-08 14:39:31 has no hits.

BS08126.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:16 Download gff for BS08126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 249..1164 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:32 Download gff for BS08126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 249..1164 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:58:11 Download gff for BS08126.3prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 631..1556 6..931 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:38:15 Download gff for BS08126.3prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 631..1556 6..931 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:38:15 Download gff for BS08126.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2884081..2884259 6..185 97 <- Plus
3L 2885896..2886408 186..698 100 <- Plus
3L 2886689..2886922 699..931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:58:11 Download gff for BS08126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2886689..2886922 699..931 99   Plus
arm_3L 2884081..2884259 6..185 97 <- Plus
arm_3L 2885896..2886408 186..698 100 <- Plus

BS08126.5prime Sequence

914 bp (827 high quality bases) assembled on 2006-01-06

> BS08126.5prime
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCAGACG
ACATCGCAGTTCAT

BS08126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9972-PA 1164 CG9972-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1996 CG9972-RA 383..1281 17..914 4470 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2885992..2886408 914..499 2035 99.8 Minus
3L 28110227 3L 2886686..2886952 501..235 1335 100 Minus
3L 28110227 3L 2888888..2889045 236..79 790 100 Minus
3L 28110227 3L 2889101..2889163 79..17 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:50:05 has no hits.

BS08126.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:17 Download gff for BS08126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 1..899 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:34 Download gff for BS08126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 1..899 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:07 Download gff for BS08126.5prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 372..1281 7..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:00 Download gff for BS08126.5prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 372..1281 7..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:00 Download gff for BS08126.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2888890..2889044 80..234 100 <- Minus
3L 2889101..2889174 7..79 94   Minus
3L 2885992..2886408 499..914 99 <- Minus
3L 2886689..2886952 235..498 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:07 Download gff for BS08126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2885992..2886408 499..914 99 <- Minus
arm_3L 2886689..2886952 235..498 100 <- Minus
arm_3L 2888890..2889044 80..234 100 <- Minus
arm_3L 2889101..2889174 7..79 94   Minus

BS08126.complete Sequence

1196 bp (1196 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636104

> BS08126.complete
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCCAGAC
GACATCGCAGTTCATCACCCCGCAGGCGGCACTGAATAGCCGCGGAAACT
GGATGTTTGTGGTCAACGAGCAGAACACCGCTCGCCAAATGGTCAAGGCG
GAGCTTTGCGCCTCGAACACCTGCTCGAACCTGTGCGAATTGCCCAACGG
CTACAACTCGAGATGCGAGCAGAAGTTTGTGCAAAAACGCTTAATTGCGC
TCCAGGGCAACGGGCAGAATCTGTACACGGACACGTTCTGGTTTCCCAGT
TGCTGTGTCTGCACGATAGCCGCCAATTAAAAGCTTTCTAGACCAT

BS08126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1164 CG9972-PA 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1996 CG9972-RA 383..1547 17..1181 5825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2885896..2886408 1011..499 2565 100 Minus
3L 28110227 3L 2886686..2886952 501..235 1335 100 Minus
3L 28110227 3L 2884090..2884259 1181..1012 850 100 Minus
3L 28110227 3L 2888888..2889045 236..79 790 100 Minus
3L 28110227 3L 2889101..2889163 79..17 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:52:23 has no hits.

BS08126.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:18 Download gff for BS08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 1..1164 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:25 Download gff for BS08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 370..1554 7..1191 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:01 Download gff for BS08126.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 383..1544 17..1178 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:18 Download gff for BS08126.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 370..1554 7..1191 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:03 Download gff for BS08126.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 383..1544 17..1178 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:03 Download gff for BS08126.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2884093..2884259 1012..1178 100 <- Minus
3L 2885896..2886408 499..1011 100 <- Minus
3L 2886689..2886952 235..498 100 <- Minus
3L 2888890..2889044 80..234 100 <- Minus
3L 2889101..2889163 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:01 Download gff for BS08126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2884093..2884259 1012..1178 100 <- Minus
arm_3L 2885896..2886408 499..1011 100 <- Minus
arm_3L 2886689..2886952 235..498 100 <- Minus
arm_3L 2888890..2889044 80..234 100 <- Minus
arm_3L 2889101..2889163 17..79 100   Minus

BS08126.pep Sequence

Translation from 16 to 1179

> BS08126.pep
MTKSIKRPPPFSCKQVLLTYVILAYTVAAHSSPPPCGLYGAPPCQFLPAP
PGQTPTCARPGKTYCEHADNYPTYLIKSLVRKWGYEAATLLVDETWEDFA
AVAWHDTPVFYDPKSIFPPRDPAAQDFNGYSYQTPFGGNPQRPSGGGNPL
FVSNPSTEAPTYLLYTSSGGGHRSGHRYNSQGGGTSSSGGHLYINQSDKS
TPYNATLWLKRLVRDLSRKQRQPDEVQAEVVEPVNEQTEEAEEQDNPAED
HPQSKRDVSLNMDLLDIVGVEAPNPLKKRSRTKRQSPGRSTLCQTTSQFI
TPQAALNSRGNWMFVVNEQNTARQMVKAELCASNTCSNLCELPNGYNSRC
EQKFVQKRLIALQGNGQNLYTDTFWFPSCCVCTIAAN*

BS08126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-PA 387 CG9972-PA 1..387 1..387 2110 100 Plus