Clone Sequence Records
BS08127.3prime Sequence
925 bp (796 high quality bases) assembled on 2006-01-06
> BS08127.3prime
ATGGTCTAGAAAGCTTTCAAATGACGGCTCTCTCACTGGGCTTTTTGCCG
CTGCCAATGGCGCCGCTACAGCCGGCGTCGCTGTCCCTGCCGCTCTCTTC
AACTATGGCAAAAGAGTCCGAATCCGAGGTGCCCGCAGGCCAATCGATGT
CCGGCATGGTGGGCCAGTCGATGTCCTCCGTGGTGTCCCAATCGACCGCG
CGGGTTTGACTGATCTCGAAGAGCGCAGGCGAGCAGAGGCTGAGCACCTC
CTCCTTCAACTTGGTTAACAGGGACTCGAAACTATCACTGGTCTTGCAGA
GGAAACAAACCGCCAGCGAGGGGTCCATGGCGGAGAAGTTCAGGCGAGCA
GCATGCTTTTGATGGTAGGTCTCGTCGTAGTCCTGTTCTGCCGCAGCAGT
TTTCTGTGCCACGGCGCCCGTTCTCTGCGTGGTATGAGGATCTAGGTAGA
GAACCTCATCGTCCACATAGCCCAGGAAGTACAGAGCCTGGTTTGGTCGA
CCTCCGATCATGCCACAACTGCTGTCTAGTTCAAGGCAGCGCTTTAAGGC
AGGCACGTAAAGCGGGTTAATGTCTGTGATGCCCAGGCGCAGGGGGATTA
TGAGCAGCAGTGGCTTCCACGAGCCTCCTTCTCGGCACGACGCATATACG
TCATCCAATACCACTGTGCTATCCATGGCCACGTGAATCGCCAGGGAGCT
CCAGTCATCGAAGCGCACTAGTTTTTTGAGAATCTGGGCTACTGTATTCG
GTCCCAGCCACTCGCCGACCGCTTTGTTCTGGGACTCTCCCATCTGGGCA
ATCTGGTGTATGGAGTAGAAGCTATTCCTTACGTCTTCAAAACGGTTCAC
GATCTTGAGGTAGGTGGCATCACGGCAGTCCGGCGTCCAGAACCAGTCGC
GTCCAAATGTAAGTCGATCAGGGCC
BS08127.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4428-PA | 1236 | Atg4-RA | 349..1236 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4a-RA | 2076 | CG4428-RA | 660..1569 | 925..17 | 4525 | 99.9 | Minus |
| Atg4a-RB | 4075 | CG4428-RB | 660..1566 | 925..17 | 4470 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1082116..1082665 | 649..100 | 2735 | 99.8 | Minus |
| 2L | 23513712 | 2L | 1081720..1081920 | 925..726 | 955 | 99.5 | Minus |
| 2L | 23513712 | 2L | 1082788..1082871 | 100..17 | 420 | 100 | Minus |
| 2L | 23513712 | 2L | 1081973..1082056 | 729..646 | 405 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:38:19 has no hits.
BS08127.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:18 Download gff for
BS08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-PA | 327..1236 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:35 Download gff for
BS08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4428-PA | 327..1236 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:13:54 Download gff for
BS08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 660..1572 | 14..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:18 Download gff for
BS08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4a-RA | 660..1572 | 14..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:18 Download gff for
BS08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1081720..1081920 | 726..925 | 99 | -> | Minus |
| 2L | 1081977..1082056 | 646..725 | 100 | -> | Minus |
| 2L | 1082120..1082665 | 100..645 | 100 | -> | Minus |
| 2L | 1082789..1082874 | 14..99 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:13:54 Download gff for
BS08127.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1081720..1081920 | 726..925 | 99 | -> | Minus |
| arm_2L | 1081977..1082056 | 646..725 | 100 | -> | Minus |
| arm_2L | 1082120..1082665 | 100..645 | 100 | -> | Minus |
| arm_2L | 1082789..1082874 | 14..99 | 98 | | Minus |
BS08127.5prime Sequence
941 bp (763 high quality bases) assembled on 2006-01-06
> BS08127.5prime
GAAGTTATCAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGA
TCATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCT
AGTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCG
AAGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGG
AGCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATAT
CGCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGG
CTGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGA
TCGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGAT
GCCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTT
CTACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGG
TCGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTA
GTGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAG
CACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGT
GGAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATT
AACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAG
TTGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCT
ATGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACG
GGCGCCGTGGCACAGAANACTGCTGCGGCAGAACAGGACTACGACGAGAC
CTACCATCAAAAGCATGCTGCTCGCCTGAACTTCTCCGCCA
BS08127.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4428-PA | 1236 | Atg4-RA | 1..925 | 17..941 | 4606 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4a-RB | 4075 | CG4428-RB | 334..1258 | 17..941 | 4614 | 99.9 | Plus |
| Atg4a-RA | 2076 | CG4428-RA | 334..1258 | 17..941 | 4614 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1081577..1081920 | 200..543 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 1082116..1082437 | 620..941 | 1584 | 99.4 | Plus |
| 2L | 23513712 | 2L | 1081244..1081427 | 17..200 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 1081973..1082056 | 540..623 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:49:48 has no hits.
BS08127.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:19 Download gff for
BS08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:37 Download gff for
BS08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4428-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:27:06 Download gff for
BS08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 328..1257 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:51:09 Download gff for
BS08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4a-RA | 328..1257 | 9..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:51:09 Download gff for
BS08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1082120..1082436 | 624..940 | 99 | | Plus |
| 2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
| 2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
| 2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:27:06 Download gff for
BS08127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
| arm_2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
| arm_2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
| arm_2L | 1082120..1082436 | 624..940 | 99 | | Plus |
BS08127.complete Sequence
1268 bp (1268 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636105
> BS08127.complete
GAAGTTATCAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGA
TCATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCT
AGTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCG
AAGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGG
AGCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATAT
CGCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGG
CTGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGA
TCGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGAT
GCCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTT
CTACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGG
TCGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTA
GTGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAG
CACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGT
GGAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATT
AACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAG
TTGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCT
ATGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACG
GGCGCCGTGGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGAC
CTACCATCAAAAGCATGCTGCTCGCCTGAACTTCTCCGCCATGGACCCCT
CGCTGGCGGTTTGTTTCCTCTGCAAGACCAGTGATAGTTTCGAGTCCCTG
TTAACCAAGTTGAAGGAGGAGGTGCTCAGCCTCTGCTCGCCTGCGCTCTT
CGAGATCAGTCAAACCCGCGCGGTCGATTGGGACACCACGGAGGACATCG
ACTGGCCCACCATGCCGGACATCGATTGGCCTGCGGGCACCTCGGATTCG
GACTCTTTTGCCATAGTTGAAGAGAGCGGCAGGGACAGCGACGCCGGCTG
TAGCGGCGCCATTGGCAGCGGCAAAAAGCCCAGTGAGAGAGCCGTCATTT
GAAAGCTTTCTAGACCAT
BS08127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4a-RA | 1236 | CG4428-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
| Atg4a-RB | 1233 | CG4428-PB | 1..1233 | 17..1252 | 6100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4a-RA | 2076 | CG4428-RA | 334..1569 | 17..1252 | 6180 | 100 | Plus |
| Atg4a-RB | 4075 | CG4428-RB | 334..1566 | 17..1252 | 6100 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1082116..1082665 | 620..1169 | 2735 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1081577..1081920 | 200..543 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 1081244..1081427 | 17..200 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 1082788..1082871 | 1169..1252 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 1081973..1082056 | 540..623 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:54:15 has no hits.
BS08127.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:19 Download gff for
BS08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 1..1236 | 17..1252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:26 Download gff for
BS08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 326..1570 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:26 Download gff for
BS08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 334..1568 | 17..1251 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:19 Download gff for
BS08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 326..1570 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:39 Download gff for
BS08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4a-RA | 334..1568 | 17..1251 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:39 Download gff for
BS08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
| 2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
| 2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
| 2L | 1082120..1082665 | 624..1169 | 100 | -> | Plus |
| 2L | 1082789..1082870 | 1170..1251 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:26 Download gff for
BS08127.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
| arm_2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
| arm_2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
| arm_2L | 1082120..1082665 | 624..1169 | 100 | -> | Plus |
| arm_2L | 1082789..1082870 | 1170..1251 | 100 | | Plus |
BS08127.pep Sequence
Translation from 16 to 1251
> BS08127.pep
MLVGLSDQLARIMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRRNTDV
WVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCML
RCGQMVLAQALIDLHLGRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQ
IAQMGESQNKAVGEWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLD
DVYASCREGGSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIG
GRPNQALYFLGYVDDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH
AARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPALFEISQT
RAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIG
SGKKPSERAVI*
BS08127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4a-PA | 411 | CG4428-PA | 1..411 | 1..411 | 2172 | 100 | Plus |
| Atg4a-PB | 410 | CG4428-PB | 1..410 | 1..411 | 2155 | 99.8 | Plus |
| Atg4b-PA | 668 | CG6194-PA | 263..567 | 63..333 | 452 | 32.9 | Plus |
