Clone Sequence Records
BS08129.3prime Sequence
926 bp (775 high quality bases) assembled on 2006-01-06
> BS08129.3prime
ATGGTCTAGAAAGCTTCTATTTCGGGGCTATTTCGGCCATGCTAGCCTCG
AAGATGGCCGTGTTGATGCGGTGCTTGAGGGCGACAAGCACCTCCCGATT
GCTGATGGCGCGCATCTCGTTGGCCACGTACTCTCCATACGTTGCAAACT
CGTCGCGCGCTGGCGGCAGGCTGACAATGGTGGGCGGAGGTGGACTGGGG
ATGGCTTGGGCCTGGGCTGGTTTGGGCGGCGTGTTCACCTTGGGCAAGCG
CAAGTTACTCATGGTTATTCCGGGCGAGGTGGTCAGCACACTGCTGGCTG
TGCCATTGGCACTGCTTTCCAGTGCGGGGGACAGAATGGAGGTGGTGTTG
TGCGACGCTGGACTGGCTTCGTAGTACATGCGTTTGACCGGCGGCGGATG
CAGTTGCGTGTGCTCCTCAAAGTAGCTATCCTCCTGCCCACTCGACGTGT
CCCGCCGCTGGATCTTAATGATTCGTGTGGGCATTACGTGCACTGAGCTG
CTGCCCGTGCTTTGGGTTGGTGTGGTCTGGTAGTGCAGTTCACCGCTCTC
GTTGGCCTGGAAGCTGACGGCTTCCACGGCGTTGCCCTGGTGGTGCAGGT
CCATCAGCGTCTGATGATGATTCTCCAGCGGCTCCGTCTCTTCCTGTTCG
TTGAGGCTTACAAAGCGGACGCTCATCTCTTTCGCCTGCTTAGGCTTGAC
TTCGCCCTCCTCTAGCTCCGACTCATCAATGTCATCCACGTCTTTGGTTG
TCTCCTCGATAAGTTTCTCCAGCTCTTGGGCCCGACTGCTGGCGTGGTTC
TTGCGGAGGTACTCCTCGTTCATGTTGGCGTTCGTGTTGCTGTTGTGATT
GGCCGGCGTGCTGCTGTCGCTGTTATGATCGGCGGTGACCTCGCCCAGGA
CAACTTTCGCTCGTCGCCCTGCAGAT
BS08129.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-PB | 1233 | CG11504-RB | 347..1233 | 903..17 | 4435 | 100 | Minus |
CG11504-PA | 1233 | CG11504-RA | 347..1233 | 903..17 | 4435 | 100 | Minus |
CG11504-PC | 1233 | CG11504-RC | 347..1233 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1788 | CG11504-RC | 702..1613 | 926..16 | 4535 | 99.9 | Minus |
CG11504-RA | 1792 | CG11504-RA | 706..1617 | 926..16 | 4535 | 99.9 | Minus |
CG11504-RB | 1856 | CG11504-RB | 770..1681 | 926..16 | 4535 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29998669..29999580 | 926..16 | 4510 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 18:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 876..786 | 122 | 59.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 874..782 | 120 | 67.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 874..788 | 120 | 65.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2390 | 870..786 | 109 | 61.6 | Minus |
BS08129.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:22 Download gff for
BS08129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PA | 323..1233 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:40 Download gff for
BS08129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PC | 323..1233 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:52 Download gff for
BS08129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 770..1683 | 11..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:33:49 Download gff for
BS08129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 770..1683 | 11..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:33:49 Download gff for
BS08129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29998669..29999582 | 11..926 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:52 Download gff for
BS08129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25824391..25825304 | 11..926 | 99 | | Minus |
BS08129.5prime Sequence
932 bp (823 high quality bases) assembled on 2006-01-06
> BS08129.5prime
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCCGGTCAACGCATGTACTACGAAGC
CAGTCCAGCGTCGCACAACACCACCTCCATTC
BS08129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-PB | 1233 | CG11504-RB | 1..860 | 17..876 | 4300 | 100 | Plus |
CG11504-PA | 1233 | CG11504-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
CG11504-PC | 1233 | CG11504-RC | 1..860 | 17..876 | 4300 | 100 | Plus |
CG11504-PB | 1233 | CG11504-RB | 866..916 | 882..932 | 255 | 100 | Plus |
CG11504-PA | 1233 | CG11504-RA | 866..916 | 882..932 | 255 | 100 | Plus |
CG11504-PC | 1233 | CG11504-RC | 866..916 | 882..932 | 255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1788 | CG11504-RC | 380..1295 | 17..932 | 4535 | 99.8 | Plus |
CG11504-RA | 1792 | CG11504-RA | 384..1299 | 17..932 | 4535 | 99.8 | Plus |
CG11504-RB | 1856 | CG11504-RB | 448..1363 | 17..932 | 4535 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29998347..29999262 | 17..932 | 4520 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-10 23:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 390..480 | 122 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 392..478 | 120 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 392..484 | 120 | 67.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2390 | 396..480 | 109 | 61.6 | Plus |
BS08129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:24 Download gff for
BS08129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:42 Download gff for
BS08129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-PC | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:28 Download gff for
BS08129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1363 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:32 Download gff for
BS08129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1363 | 17..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:32 Download gff for
BS08129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29998347..29999262 | 17..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:28 Download gff for
BS08129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25824069..25824984 | 17..932 | 99 | | Plus |
BS08129.complete Sequence
1265 bp (1265 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636106
> BS08129.complete
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCGGTCAAACGCATGTACTACGAAGC
CAGTCCAGCGTCGCACAACACCACCTCCATTCTGTCCCCCGCACTGGAAA
GCAGTGCCAATGGCACAGCCAGCAGTGTGCTGACCACCTCGCCCGGAATA
ACCATGAGTAACTTGCGCTTGCCCAAGGTGAACACGCCGCCCAAACCAGC
CCAGGCCCAAGCCATCCCCAGTCCACCTCCGCCCACCATTGTCAGCCTGC
CGCCAGCGCGCGACGAGTTTGCAACGTATGGAGAGTACGTGGCCAACGAG
ATGCGCGCCATCAGCAATCGGGAGGTGCTTGTCGCCCTCAAGCACCGCAT
CAACACGGCCATCTTCGAGGCTAGCATGGCCGAAATAGCCCCGAAATAGA
AGCTTTCTAGACCAT
BS08129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1233 | CG11504-PC | 1..1233 | 17..1249 | 6165 | 100 | Plus |
CG11504-RA | 1233 | CG11504-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
CG11504-RB | 1233 | CG11504-PB | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-RC | 1788 | CG11504-RC | 380..1613 | 17..1250 | 6170 | 100 | Plus |
CG11504-RA | 1792 | CG11504-RA | 384..1617 | 17..1250 | 6170 | 100 | Plus |
CG11504-RB | 1856 | CG11504-RB | 448..1681 | 17..1250 | 6170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29998347..29999580 | 17..1250 | 6170 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 390..480 | 122 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 392..484 | 120 | 67.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 392..478 | 120 | 65.9 | Plus |
BS08129.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:20 Download gff for
BS08129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RC | 1..1233 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:28 Download gff for
BS08129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RC | 483..1718 | 17..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:42 Download gff for
BS08129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1674 | 17..1243 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:20 Download gff for
BS08129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RC | 483..1718 | 17..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:27 Download gff for
BS08129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11504-RB | 448..1674 | 17..1243 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:27 Download gff for
BS08129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29998347..29999573 | 17..1243 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:42 Download gff for
BS08129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25824069..25825295 | 17..1243 | 100 | | Plus |
BS08129.pep Sequence
Translation from 16 to 1248
> BS08129.pep
MEWTREKTLQLISEYRSRRGLWDMTCDEYRKKDVKQRLLNEVSQVLGGNI
PINELEKKFHTLRTQYHREISRMKRKEPYNSKWFGFKNLVFLSSPYACRS
TKGRLKADLQGDERKFVLGEVTADHNSDSSTPANHNSNTNANMNEEYLRK
NHASSRAQELEKLIEETTKDVDDIDESELEEGEVKPKQAKEMSVRFVSLN
EQEETEPLENHHQTLMDLHHQGNAVEAVSFQANESGELHYQTTPTQSTGS
SSVHVMPTRIIKIQRRDTSSGQEDSYFEEHTQLHPPPVKRMYYEASPASH
NTTSILSPALESSANGTASSVLTTSPGITMSNLRLPKVNTPPKPAQAQAI
PSPPPPTIVSLPPARDEFATYGEYVANEMRAISNREVLVALKHRINTAIF
EASMAEIAPK*
BS08129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11504-PC | 410 | CG11504-PC | 1..410 | 1..410 | 2124 | 100 | Plus |
CG11504-PA | 410 | CG11504-PA | 1..410 | 1..410 | 2124 | 100 | Plus |
CG11504-PB | 410 | CG11504-PB | 1..410 | 1..410 | 2124 | 100 | Plus |