Clone BS08129 Report

Search the DGRC for BS08129

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG11504-RA
Protein status:BS08129.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08129.3prime Sequence

926 bp (775 high quality bases) assembled on 2006-01-06

> BS08129.3prime
ATGGTCTAGAAAGCTTCTATTTCGGGGCTATTTCGGCCATGCTAGCCTCG
AAGATGGCCGTGTTGATGCGGTGCTTGAGGGCGACAAGCACCTCCCGATT
GCTGATGGCGCGCATCTCGTTGGCCACGTACTCTCCATACGTTGCAAACT
CGTCGCGCGCTGGCGGCAGGCTGACAATGGTGGGCGGAGGTGGACTGGGG
ATGGCTTGGGCCTGGGCTGGTTTGGGCGGCGTGTTCACCTTGGGCAAGCG
CAAGTTACTCATGGTTATTCCGGGCGAGGTGGTCAGCACACTGCTGGCTG
TGCCATTGGCACTGCTTTCCAGTGCGGGGGACAGAATGGAGGTGGTGTTG
TGCGACGCTGGACTGGCTTCGTAGTACATGCGTTTGACCGGCGGCGGATG
CAGTTGCGTGTGCTCCTCAAAGTAGCTATCCTCCTGCCCACTCGACGTGT
CCCGCCGCTGGATCTTAATGATTCGTGTGGGCATTACGTGCACTGAGCTG
CTGCCCGTGCTTTGGGTTGGTGTGGTCTGGTAGTGCAGTTCACCGCTCTC
GTTGGCCTGGAAGCTGACGGCTTCCACGGCGTTGCCCTGGTGGTGCAGGT
CCATCAGCGTCTGATGATGATTCTCCAGCGGCTCCGTCTCTTCCTGTTCG
TTGAGGCTTACAAAGCGGACGCTCATCTCTTTCGCCTGCTTAGGCTTGAC
TTCGCCCTCCTCTAGCTCCGACTCATCAATGTCATCCACGTCTTTGGTTG
TCTCCTCGATAAGTTTCTCCAGCTCTTGGGCCCGACTGCTGGCGTGGTTC
TTGCGGAGGTACTCCTCGTTCATGTTGGCGTTCGTGTTGCTGTTGTGATT
GGCCGGCGTGCTGCTGTCGCTGTTATGATCGGCGGTGACCTCGCCCAGGA
CAACTTTCGCTCGTCGCCCTGCAGAT

BS08129.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PB 1233 CG11504-RB 347..1233 903..17 4435 100 Minus
CG11504-PA 1233 CG11504-RA 347..1233 903..17 4435 100 Minus
CG11504-PC 1233 CG11504-RC 347..1233 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1788 CG11504-RC 702..1613 926..16 4535 99.9 Minus
CG11504-RA 1792 CG11504-RA 706..1617 926..16 4535 99.9 Minus
CG11504-RB 1856 CG11504-RB 770..1681 926..16 4535 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29998669..29999580 926..16 4510 99.9 Minus
Blast to na_te.dros performed 2015-02-11 18:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2456 876..786 122 59.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2438 874..782 120 67.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2442 874..788 120 65.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2390 870..786 109 61.6 Minus

BS08129.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:22 Download gff for BS08129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PA 323..1233 17..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:40 Download gff for BS08129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PC 323..1233 17..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:52 Download gff for BS08129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 770..1683 11..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:33:49 Download gff for BS08129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 770..1683 11..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:33:49 Download gff for BS08129.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29998669..29999582 11..926 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:52 Download gff for BS08129.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25824391..25825304 11..926 99   Minus

BS08129.5prime Sequence

932 bp (823 high quality bases) assembled on 2006-01-06

> BS08129.5prime
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCCGGTCAACGCATGTACTACGAAGC
CAGTCCAGCGTCGCACAACACCACCTCCATTC

BS08129.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PB 1233 CG11504-RB 1..860 17..876 4300 100 Plus
CG11504-PA 1233 CG11504-RA 1..860 17..876 4300 100 Plus
CG11504-PC 1233 CG11504-RC 1..860 17..876 4300 100 Plus
CG11504-PB 1233 CG11504-RB 866..916 882..932 255 100 Plus
CG11504-PA 1233 CG11504-RA 866..916 882..932 255 100 Plus
CG11504-PC 1233 CG11504-RC 866..916 882..932 255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1788 CG11504-RC 380..1295 17..932 4535 99.8 Plus
CG11504-RA 1792 CG11504-RA 384..1299 17..932 4535 99.8 Plus
CG11504-RB 1856 CG11504-RB 448..1363 17..932 4535 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29998347..29999262 17..932 4520 99.6 Plus
Blast to na_te.dros performed 2015-02-10 23:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2456 390..480 122 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2442 392..478 120 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2438 392..484 120 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2390 396..480 109 61.6 Plus

BS08129.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:24 Download gff for BS08129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:42 Download gff for BS08129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-PC 1..916 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:27:28 Download gff for BS08129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1363 17..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:32 Download gff for BS08129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1363 17..932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:32 Download gff for BS08129.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29998347..29999262 17..932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:27:28 Download gff for BS08129.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25824069..25824984 17..932 99   Plus

BS08129.complete Sequence

1265 bp (1265 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636106

> BS08129.complete
GAAGTTATCAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGA
TCAGTGAGTACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAG
TACCGGAAGAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGT
GCTGGGCGGGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGC
TGCGCACGCAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCC
TACAACTCCAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCC
CTACGCCTGCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCG
ACGAGCGAAAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGAC
AGCAGCACGCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGA
GGAGTACCTCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGA
AACTTATCGAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAG
CTAGAGGAGGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCG
CTTTGTAAGCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATC
ATCAGACGCTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTC
AGCTTCCAGGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAAC
CCAAAGCACGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTA
AGATCCAGCGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAG
GAGCACACGCAACTGCATCCGCCGCCGGTCAAACGCATGTACTACGAAGC
CAGTCCAGCGTCGCACAACACCACCTCCATTCTGTCCCCCGCACTGGAAA
GCAGTGCCAATGGCACAGCCAGCAGTGTGCTGACCACCTCGCCCGGAATA
ACCATGAGTAACTTGCGCTTGCCCAAGGTGAACACGCCGCCCAAACCAGC
CCAGGCCCAAGCCATCCCCAGTCCACCTCCGCCCACCATTGTCAGCCTGC
CGCCAGCGCGCGACGAGTTTGCAACGTATGGAGAGTACGTGGCCAACGAG
ATGCGCGCCATCAGCAATCGGGAGGTGCTTGTCGCCCTCAAGCACCGCAT
CAACACGGCCATCTTCGAGGCTAGCATGGCCGAAATAGCCCCGAAATAGA
AGCTTTCTAGACCAT

BS08129.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1233 CG11504-PC 1..1233 17..1249 6165 100 Plus
CG11504-RA 1233 CG11504-PA 1..1233 17..1249 6165 100 Plus
CG11504-RB 1233 CG11504-PB 1..1233 17..1249 6165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-RC 1788 CG11504-RC 380..1613 17..1250 6170 100 Plus
CG11504-RA 1792 CG11504-RA 384..1617 17..1250 6170 100 Plus
CG11504-RB 1856 CG11504-RB 448..1681 17..1250 6170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29998347..29999580 17..1250 6170 100 Plus
Blast to na_te.dros performed 2014-11-27 10:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2456 390..480 122 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2438 392..484 120 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2442 392..478 120 65.9 Plus

BS08129.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:20 Download gff for BS08129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 1..1233 17..1249 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:28 Download gff for BS08129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 483..1718 17..1255 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:42 Download gff for BS08129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1674 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:20 Download gff for BS08129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RC 483..1718 17..1255 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:27 Download gff for BS08129.complete
Subject Subject Range Query Range Percent Splice Strand
CG11504-RB 448..1674 17..1243 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:27 Download gff for BS08129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29998347..29999573 17..1243 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:42 Download gff for BS08129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25824069..25825295 17..1243 100   Plus

BS08129.pep Sequence

Translation from 16 to 1248

> BS08129.pep
MEWTREKTLQLISEYRSRRGLWDMTCDEYRKKDVKQRLLNEVSQVLGGNI
PINELEKKFHTLRTQYHREISRMKRKEPYNSKWFGFKNLVFLSSPYACRS
TKGRLKADLQGDERKFVLGEVTADHNSDSSTPANHNSNTNANMNEEYLRK
NHASSRAQELEKLIEETTKDVDDIDESELEEGEVKPKQAKEMSVRFVSLN
EQEETEPLENHHQTLMDLHHQGNAVEAVSFQANESGELHYQTTPTQSTGS
SSVHVMPTRIIKIQRRDTSSGQEDSYFEEHTQLHPPPVKRMYYEASPASH
NTTSILSPALESSANGTASSVLTTSPGITMSNLRLPKVNTPPKPAQAQAI
PSPPPPTIVSLPPARDEFATYGEYVANEMRAISNREVLVALKHRINTAIF
EASMAEIAPK*

BS08129.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11504-PC 410 CG11504-PC 1..410 1..410 2124 100 Plus
CG11504-PA 410 CG11504-PA 1..410 1..410 2124 100 Plus
CG11504-PB 410 CG11504-PB 1..410 1..410 2124 100 Plus