Clone BS08130 Report

Search the DGRC for BS08130

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCAH2-RA
Protein status:BS08130.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08130.3prime Sequence

857 bp (801 high quality bases) assembled on 2006-01-06

> BS08130.3prime
ATGGTCTAGAAAGCTTTTAAAAACCCCGGAAAATGGAGGTCCTTGACAAT
GCAGCGAGGACAACGAGGGGCAACAGCACTGCTGCGGCTTGTGCCCTCCA
CTTGCCAGCCGCATTTTCCGCATCGACGAGTGGAATCGAGCCCATGTTGT
GAATCGGAATTTCTATGTAGTTCTTGTACAAGGTGCGATCGTTCAGCGGC
TGGATGGGTCGGAAATTGTTCTTCAGATGATCATCGTTGGCTGTCAGCAG
ACGGAAGGCATTCAACTGCTTCTCCGTGATGTCAATGGGCGTTGTGAAAT
CAATCCAGGTGACCTCCTCACTGCAAGGCGGTGTGGTCAGAGAACCAGTG
TAGCTAAAGTAACTCTCCACGGACTTCGAGATGTACTCGCCCAGTGGAAG
TGGATTGGTCATATTAACGCTCTTGCCTTTGCGGTCAATCTGGGAGAGCA
AGTTGGTGAAGCCCTCATAGCCACCAGTTGATTTGTCGCCCACCTGAAAG
AAGAAGGCCATCACGGCGATGCCGTGATCCTTGTCCAGGGCGCTGGCAAA
GTCCGGATACTCTAGATTCCGCAATACCACGTGCAACTCGGCGGGATAGG
CACGATTGTTGATCAAATCCTCACTGCCAATCGTATCGTTCTCGCCCCAG
TGAAAGTGGAACTGTTCGAACTGATAGCCCAGAGGAGTTTTCTCCGCCAA
AGGACCACCACGCACACTTGGGATCTCGTCCTCGTTGTAGCTCATCTTCA
CCAGCACCGTGTGACCGTTGTTCGTCATTTGAAGATTGTCGGGCACCACT
TTGAAATTGAAAAACTCCAGCTTGGGAAACTTCTTCTCCACGGCGCTGAC
CTGGTCG

BS08130.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6906-PA 1008 CAH2-RA 168..1008 857..17 4205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RB 1619 CG6906-RB 179..1019 857..17 4205 100 Minus
CAH2-RA 1830 CG6906-RA 390..1230 857..17 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12181785..12182151 857..491 1835 100 Minus
3L 28110227 3L 12182495..12182747 269..17 1265 100 Minus
3L 28110227 3L 12182208..12182437 495..266 1150 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:24:58 has no hits.

BS08130.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:25 Download gff for BS08130.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-PA 168..1008 17..857 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:43 Download gff for BS08130.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6906-PA 168..1008 17..857 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:25:09 Download gff for BS08130.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 390..1240 8..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:24 Download gff for BS08130.3prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 390..1240 8..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:24 Download gff for BS08130.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12181785..12182148 494..857 100 -> Minus
3L 12182210..12182437 266..493 100 -> Minus
3L 12182499..12182757 8..265 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:25:09 Download gff for BS08130.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12174885..12175248 494..857 100 -> Minus
arm_3L 12175310..12175537 266..493 100 -> Minus
arm_3L 12175599..12175857 8..265 98   Minus

BS08130.5prime Sequence

862 bp (845 high quality bases) assembled on 2006-01-06

> BS08130.5prime
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGAAC
GATCGCACCTTG

BS08130.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6906-PA 1008 CAH2-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1830 CG6906-RA 222..1068 16..862 4235 100 Plus
CAH2-RB 1619 CG6906-RB 70..857 75..862 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12181675..12182151 74..550 2385 100 Plus
3L 28110227 3L 12182208..12182437 546..775 1150 100 Plus
3L 28110227 3L 12182495..12182585 772..862 455 100 Plus
3L 28110227 3L 12180097..12180155 16..74 295 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:25:16 has no hits.

BS08130.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:26 Download gff for BS08130.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:45 Download gff for BS08130.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6906-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:56 Download gff for BS08130.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 222..1068 16..862 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:08 Download gff for BS08130.5prime
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 222..1068 16..862 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:08 Download gff for BS08130.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12180097..12180155 16..74 100 -> Plus
3L 12181676..12182148 75..547 100 -> Plus
3L 12182210..12182437 548..775 100 -> Plus
3L 12182499..12182585 776..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:56 Download gff for BS08130.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12173197..12173255 16..74 100 -> Plus
arm_3L 12174776..12175248 75..547 100 -> Plus
arm_3L 12175310..12175537 548..775 100 -> Plus
arm_3L 12175599..12175685 776..862 100   Plus

BS08130.complete Sequence

1040 bp (1040 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636107

> BS08130.complete
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGAAC
GATCGCACCTTGTACAAGAACTACATAGAAATTCCGATTCACAACATGGG
CTCGATTCCACTCGTCGATGCGGAAAATGCGGCTGGCAAGTGGAGGGCAC
AAGCCGCAGCAGTGCTGTTGCCCCTCGTTGTCCTCGCTGCATTGTCAAGG
ACCTCCATTTTCCGGGGTTTTTAAAAGCTTTCTAGACCAT

BS08130.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1008 CG6906-PA 1..1008 17..1024 5040 100 Plus
CAH2-RB 762 CG6906-PB 1..762 263..1024 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-RA 1830 CG6906-RA 222..1230 16..1024 5045 100 Plus
CAH2-RB 1619 CG6906-RB 70..1019 75..1024 4750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12181675..12182151 74..550 2385 100 Plus
3L 28110227 3L 12182495..12182747 772..1024 1265 100 Plus
3L 28110227 3L 12182208..12182437 546..775 1150 100 Plus
3L 28110227 3L 12180097..12180155 16..74 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:57:05 has no hits.

BS08130.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:21 Download gff for BS08130.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 1..1008 17..1024 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:30 Download gff for BS08130.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 219..1237 16..1033 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:07 Download gff for BS08130.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 223..1228 17..1022 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:21 Download gff for BS08130.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 219..1237 16..1033 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:44 Download gff for BS08130.complete
Subject Subject Range Query Range Percent Splice Strand
CAH2-RA 223..1228 17..1022 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:44 Download gff for BS08130.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12182499..12182745 776..1022 100   Plus
3L 12180098..12180155 17..74 100 -> Plus
3L 12181676..12182148 75..547 100 -> Plus
3L 12182210..12182437 548..775 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:07 Download gff for BS08130.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12173198..12173255 17..74 100 -> Plus
arm_3L 12174776..12175248 75..547 100 -> Plus
arm_3L 12175310..12175537 548..775 100 -> Plus
arm_3L 12175599..12175845 776..1022 100   Plus

BS08130.pep Sequence

Translation from 16 to 1023

> BS08130.pep
MRRCRNTPFAIVIAPILICASLVLAQDFGYEGRHGPEHWSEDYARCSGKH
QSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQMTNNGHTVLVKMSYNEDE
IPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVV
LRNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKG
KSVNMTNPLPLGEYISKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDIT
EKQLNAFRLLTANDDHLKNNFRPIQPLNDRTLYKNYIEIPIHNMGSIPLV
DAENAAGKWRAQAAAVLLPLVVLAALSRTSIFRGF*

BS08130.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CAH2-PA 335 CG6906-PA 1..335 1..335 1776 100 Plus
CAH2-PB 253 CG6906-PB 1..253 83..335 1333 100 Plus
CG6074-PA 311 CG6074-PA 12..284 16..283 413 34.9 Plus
CAH1-PA 270 CG7820-PA 1..264 24..282 387 34.9 Plus
CG3940-PC 304 CG3940-PC 3..284 11..299 334 31.9 Plus