Clone Sequence Records
BS08130.3prime Sequence
857 bp (801 high quality bases) assembled on 2006-01-06
> BS08130.3prime
ATGGTCTAGAAAGCTTTTAAAAACCCCGGAAAATGGAGGTCCTTGACAAT
GCAGCGAGGACAACGAGGGGCAACAGCACTGCTGCGGCTTGTGCCCTCCA
CTTGCCAGCCGCATTTTCCGCATCGACGAGTGGAATCGAGCCCATGTTGT
GAATCGGAATTTCTATGTAGTTCTTGTACAAGGTGCGATCGTTCAGCGGC
TGGATGGGTCGGAAATTGTTCTTCAGATGATCATCGTTGGCTGTCAGCAG
ACGGAAGGCATTCAACTGCTTCTCCGTGATGTCAATGGGCGTTGTGAAAT
CAATCCAGGTGACCTCCTCACTGCAAGGCGGTGTGGTCAGAGAACCAGTG
TAGCTAAAGTAACTCTCCACGGACTTCGAGATGTACTCGCCCAGTGGAAG
TGGATTGGTCATATTAACGCTCTTGCCTTTGCGGTCAATCTGGGAGAGCA
AGTTGGTGAAGCCCTCATAGCCACCAGTTGATTTGTCGCCCACCTGAAAG
AAGAAGGCCATCACGGCGATGCCGTGATCCTTGTCCAGGGCGCTGGCAAA
GTCCGGATACTCTAGATTCCGCAATACCACGTGCAACTCGGCGGGATAGG
CACGATTGTTGATCAAATCCTCACTGCCAATCGTATCGTTCTCGCCCCAG
TGAAAGTGGAACTGTTCGAACTGATAGCCCAGAGGAGTTTTCTCCGCCAA
AGGACCACCACGCACACTTGGGATCTCGTCCTCGTTGTAGCTCATCTTCA
CCAGCACCGTGTGACCGTTGTTCGTCATTTGAAGATTGTCGGGCACCACT
TTGAAATTGAAAAACTCCAGCTTGGGAAACTTCTTCTCCACGGCGCTGAC
CTGGTCG
BS08130.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6906-PA | 1008 | CAH2-RA | 168..1008 | 857..17 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RB | 1619 | CG6906-RB | 179..1019 | 857..17 | 4205 | 100 | Minus |
CAH2-RA | 1830 | CG6906-RA | 390..1230 | 857..17 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12181785..12182151 | 857..491 | 1835 | 100 | Minus |
3L | 28110227 | 3L | 12182495..12182747 | 269..17 | 1265 | 100 | Minus |
3L | 28110227 | 3L | 12182208..12182437 | 495..266 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:24:58 has no hits.
BS08130.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:25 Download gff for
BS08130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-PA | 168..1008 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:43 Download gff for
BS08130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6906-PA | 168..1008 | 17..857 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:25:09 Download gff for
BS08130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 390..1240 | 8..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:24 Download gff for
BS08130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 390..1240 | 8..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:24 Download gff for
BS08130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12181785..12182148 | 494..857 | 100 | -> | Minus |
3L | 12182210..12182437 | 266..493 | 100 | -> | Minus |
3L | 12182499..12182757 | 8..265 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:25:09 Download gff for
BS08130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12174885..12175248 | 494..857 | 100 | -> | Minus |
arm_3L | 12175310..12175537 | 266..493 | 100 | -> | Minus |
arm_3L | 12175599..12175857 | 8..265 | 98 | | Minus |
BS08130.5prime Sequence
862 bp (845 high quality bases) assembled on 2006-01-06
> BS08130.5prime
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGAAC
GATCGCACCTTG
BS08130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6906-PA | 1008 | CAH2-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RA | 1830 | CG6906-RA | 222..1068 | 16..862 | 4235 | 100 | Plus |
CAH2-RB | 1619 | CG6906-RB | 70..857 | 75..862 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12181675..12182151 | 74..550 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 12182208..12182437 | 546..775 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 12182495..12182585 | 772..862 | 455 | 100 | Plus |
3L | 28110227 | 3L | 12180097..12180155 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:25:16 has no hits.
BS08130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:26 Download gff for
BS08130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:45 Download gff for
BS08130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6906-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:43:56 Download gff for
BS08130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 222..1068 | 16..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:08 Download gff for
BS08130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 222..1068 | 16..862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:08 Download gff for
BS08130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12180097..12180155 | 16..74 | 100 | -> | Plus |
3L | 12181676..12182148 | 75..547 | 100 | -> | Plus |
3L | 12182210..12182437 | 548..775 | 100 | -> | Plus |
3L | 12182499..12182585 | 776..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:43:56 Download gff for
BS08130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12173197..12173255 | 16..74 | 100 | -> | Plus |
arm_3L | 12174776..12175248 | 75..547 | 100 | -> | Plus |
arm_3L | 12175310..12175537 | 548..775 | 100 | -> | Plus |
arm_3L | 12175599..12175685 | 776..862 | 100 | | Plus |
BS08130.complete Sequence
1040 bp (1040 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636107
> BS08130.complete
GAAGTTATCAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTG
TCATTGCTCCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTT
GGCTACGAGGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCG
CTGCAGTGGAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCG
TGGAGAAGAAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCC
GACAATCTTCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAG
CTACAACGAGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGA
AAACTCCTCTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAG
AACGATACGATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGC
CGAGTTGCACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCG
CCCTGGACAAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTG
GGCGACAAATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCA
GATTGACCGCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGG
GCGAGTACATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCT
CTGACCACACCGCCTTGCAGTGAGGAGGTCACCTGGATTGATTTCACAAC
GCCCATTGACATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAG
CCAACGATGATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGAAC
GATCGCACCTTGTACAAGAACTACATAGAAATTCCGATTCACAACATGGG
CTCGATTCCACTCGTCGATGCGGAAAATGCGGCTGGCAAGTGGAGGGCAC
AAGCCGCAGCAGTGCTGTTGCCCCTCGTTGTCCTCGCTGCATTGTCAAGG
ACCTCCATTTTCCGGGGTTTTTAAAAGCTTTCTAGACCAT
BS08130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RA | 1008 | CG6906-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CAH2-RB | 762 | CG6906-PB | 1..762 | 263..1024 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-RA | 1830 | CG6906-RA | 222..1230 | 16..1024 | 5045 | 100 | Plus |
CAH2-RB | 1619 | CG6906-RB | 70..1019 | 75..1024 | 4750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12181675..12182151 | 74..550 | 2385 | 100 | Plus |
3L | 28110227 | 3L | 12182495..12182747 | 772..1024 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 12182208..12182437 | 546..775 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 12180097..12180155 | 16..74 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:57:05 has no hits.
BS08130.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:21 Download gff for
BS08130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 1..1008 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:30 Download gff for
BS08130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 219..1237 | 16..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:07 Download gff for
BS08130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 223..1228 | 17..1022 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:21 Download gff for
BS08130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 219..1237 | 16..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:44 Download gff for
BS08130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CAH2-RA | 223..1228 | 17..1022 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:44 Download gff for
BS08130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12182499..12182745 | 776..1022 | 100 | | Plus |
3L | 12180098..12180155 | 17..74 | 100 | -> | Plus |
3L | 12181676..12182148 | 75..547 | 100 | -> | Plus |
3L | 12182210..12182437 | 548..775 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:07 Download gff for
BS08130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12173198..12173255 | 17..74 | 100 | -> | Plus |
arm_3L | 12174776..12175248 | 75..547 | 100 | -> | Plus |
arm_3L | 12175310..12175537 | 548..775 | 100 | -> | Plus |
arm_3L | 12175599..12175845 | 776..1022 | 100 | | Plus |
BS08130.pep Sequence
Translation from 16 to 1023
> BS08130.pep
MRRCRNTPFAIVIAPILICASLVLAQDFGYEGRHGPEHWSEDYARCSGKH
QSPINIDQVSAVEKKFPKLEFFNFKVVPDNLQMTNNGHTVLVKMSYNEDE
IPSVRGGPLAEKTPLGYQFEQFHFHWGENDTIGSEDLINNRAYPAELHVV
LRNLEYPDFASALDKDHGIAVMAFFFQVGDKSTGGYEGFTNLLSQIDRKG
KSVNMTNPLPLGEYISKSVESYFSYTGSLTTPPCSEEVTWIDFTTPIDIT
EKQLNAFRLLTANDDHLKNNFRPIQPLNDRTLYKNYIEIPIHNMGSIPLV
DAENAAGKWRAQAAAVLLPLVVLAALSRTSIFRGF*
BS08130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CAH2-PA | 335 | CG6906-PA | 1..335 | 1..335 | 1776 | 100 | Plus |
CAH2-PB | 253 | CG6906-PB | 1..253 | 83..335 | 1333 | 100 | Plus |
CG6074-PA | 311 | CG6074-PA | 12..284 | 16..283 | 413 | 34.9 | Plus |
CAH1-PA | 270 | CG7820-PA | 1..264 | 24..282 | 387 | 34.9 | Plus |
CG3940-PC | 304 | CG3940-PC | 3..284 | 11..299 | 334 | 31.9 | Plus |