Clone Sequence Records
BS08131.3prime Sequence
806 bp (805 high quality bases) assembled on 2006-01-06
> BS08131.3prime
ATGGTCTAGAAAGCTTTTAGTTGGAGGCCGTGATGGCCACCGGTGTCGGT
GAGGGTTGTGCCACGACTGGGCTTATGGTTACGGCAGGTGGAGCGCTATT
GTTGAGCTCAGACACGCCTGAGGAGGATATTTCAGCAGCAACCTTGAGTC
CATTGGGGGTTGCACCCAAGCTTTGACGCGAGTTGCGCTTACGGTGCATA
CGCGGCTTGTTTGGCGAGGGAGTCTTGGTAGTAGAGTCGGGCAACGAGGA
AACGCTGCGCGACTTGTCACCTCCTGCTCCAAACTCGGTGCTAGCCGATG
GGGAGCTGGATGGCCTAGCGTCCTTCACCGATTGGCGGCCGCCGCGTCGA
TTGCGACGACGATAATTGTTATTATTGTTGCTGTTACCCTTGACAACCGG
CTTCACCGTGGTCTTCTTGGGATCGAAATAGCTGTCCAGAAGCTCGAGCA
GCTCCGCCTTGTCCTTGCTCTTTAGCCGGCCAATTGACTGCAGGGCTATG
TCCAGGCCCTCGATGTTTTTCTCTGCCCAGATGGCACTTAGCGTGTTCAA
ATCGAACCCATTCTCGGCCAGCACAATGCGGAACTTTACGGCACGCACAC
GATGGTACAGAGTGGTCTTGAAGTAGTTCAGGAACACCGGACGGAAGGAG
TTTTGACGCTCCAAATTTTCGATCTGGATATCCAGCTCCAGGACATCGGA
CACCACCAACTTGGCAAACGGACGTATGGCATTAAACATATTCTCCAATG
CCTCCGAGCTTTTTGGTTCCGGCTTGCCGTCGGAGTTGCTCAGCTGAAGG
GCCACA
BS08131.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8994-PA | 1599 | exu-RA | 810..1599 | 806..17 | 3950 | 100 | Minus |
CG8994-PB | 1599 | exu-RB | 810..1599 | 806..17 | 3950 | 100 | Minus |
CG8994-PC | 1599 | exu-RC | 810..1599 | 806..17 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 2631 | CG8994-RD | 961..1752 | 806..15 | 3960 | 100 | Minus |
exu-RC | 2621 | CG8994-RC | 951..1742 | 806..15 | 3960 | 100 | Minus |
exu-RB | 1988 | CG8994-RB | 951..1742 | 806..15 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20668598..20669389 | 15..806 | 3960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:57:39 has no hits.
BS08131.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:28 Download gff for
BS08131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-PB | 811..1599 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:46 Download gff for
BS08131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8994-PC | 811..1599 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:48:11 Download gff for
BS08131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 952..1751 | 8..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:04:45 Download gff for
BS08131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 952..1751 | 8..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:04:45 Download gff for
BS08131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20668589..20669388 | 8..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:48:11 Download gff for
BS08131.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16556094..16556893 | 8..805 | 99 | | Plus |
BS08131.5prime Sequence
913 bp (852 high quality bases) assembled on 2006-01-06
> BS08131.5prime
GAAGTTATCAGTCGACATGGTTGCCGATAACATCGATGCCGGAGTGGCCA
TTGCCGTCGCCGATCAATCCTCGTCGCCCGTGGGCGATAAAGTTGAGCTG
CCGGCCGGTAATTATATCCTGGTGGGCGTGGATATCGACACCACTGGACG
TCGTCTAATGGATGAGATTGTCCAGCTGGCCGCTTATACACCCACCGACC
ACTTCGAGCAGTACATCATGCCATATATGAATCTGAATCCAGCTGCTCGC
CAGCGTCATCAAGTTCGTGTTATTTCGATTGGCTTTTATCGTATGCTGAA
GTCGATGCAGACTTATAAGATCATTAAATCCAAGTCTGAGATCGCTGCCC
TCAAGGACTTCCTCAACTGGCTTGAGCAACTGAAGACCAAGGCGGGTCCC
AGCTCGGACGGGATTGTGCTTATCTATCATGAAGAGCGCAAGTTCATTCC
CTACATGATCCTGGAGTCGTTGAAGAAGTACGGCCTGTTGGAGCGCTTCA
CCGCGTCGGTGAAGTCGTTTGCAAACAGCATCAATCTGGCCAAGGCTTCC
ATTGGCGATGCCAACATAAAGAACTACAGTCTGCGAAAGCTTTCCAAGAT
CTTGTCCACGACCAAGGAGGAAGACGCGGCTTGCTCTGCGTCCACATCTG
GATCTGGATCTGGCTTGGGATCTGGATCTAGTATGGTGTCCGATTCGGTA
TCGATATCCCCCAGGGACAGTACCGTGACCAATGGTGACGATAAGCAATC
TAGCAAGAACGCCGTTCAGGGTAAGCGGGAACTGTTTGATGGCAATGCCA
GTGTTCGTGCCAAATTGGCCTTTGATGTGGCCCTTCAGCTGAGCAACTCC
GACGGCAAGCCGGAACCAAAAAGCTCGGAGGCATTGGAGAATATGTTTAA
TGCCATACGTCCG
BS08131.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8994-PA | 1599 | exu-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
CG8994-PB | 1599 | exu-RB | 1..897 | 17..913 | 4485 | 100 | Plus |
CG8994-PC | 1599 | exu-RC | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 2631 | CG8994-RD | 152..1048 | 17..913 | 4485 | 100 | Plus |
exu-RC | 2621 | CG8994-RC | 142..1038 | 17..913 | 4485 | 100 | Plus |
exu-RB | 1988 | CG8994-RB | 142..1038 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20669302..20669897 | 913..318 | 2980 | 100 | Minus |
2R | 25286936 | 2R | 20669979..20670133 | 319..165 | 775 | 100 | Minus |
2R | 25286936 | 2R | 20670201..20670350 | 166..17 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:59:49 has no hits.
BS08131.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:29 Download gff for
BS08131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-PB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:47 Download gff for
BS08131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8994-PC | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:17 Download gff for
BS08131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 137..1038 | 10..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:59:33 Download gff for
BS08131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 137..1038 | 10..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:59:33 Download gff for
BS08131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20669302..20669895 | 320..913 | 100 | <- | Minus |
2R | 20669979..20670131 | 167..319 | 100 | <- | Minus |
2R | 20670201..20670355 | 10..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:17 Download gff for
BS08131.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16556807..16557400 | 320..913 | 100 | <- | Minus |
arm_2R | 16557484..16557636 | 167..319 | 100 | <- | Minus |
arm_2R | 16557706..16557860 | 10..166 | 97 | | Minus |
BS08131.complete Sequence
1631 bp (1631 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636108
> BS08131.complete
GAAGTTATCAGTCGACATGGTTGCCGATAACATCGATGCCGGAGTGGCCA
TTGCCGTCGCCGATCAATCCTCGTCGCCCGTGGGCGATAAAGTTGAGCTG
CCGGCCGGTAATTATATCCTGGTGGGCGTGGATATCGACACCACTGGACG
TCGTCTAATGGATGAGATTGTCCAGCTGGCCGCTTATACACCCACCGACC
ACTTCGAGCAGTACATCATGCCATATATGAATCTGAATCCAGCTGCTCGC
CAGCGTCATCAAGTTCGTGTTATTTCGATTGGCTTTTATCGTATGCTGAA
GTCGATGCAGACTTATAAGATCATTAAATCCAAGTCTGAGATCGCTGCCC
TCAAGGACTTCCTCAACTGGCTTGAGCAACTGAAGACCAAGGCGGGTCCC
AGCTCGGACGGGATTGTGCTTATCTATCATGAAGAGCGCAAGTTCATTCC
CTACATGATCCTGGAGTCGTTGAAGAAGTACGGCCTGTTGGAGCGCTTCA
CCGCGTCGGTGAAGTCGTTTGCAAACAGCATCAATCTGGCCAAGGCTTCC
ATTGGCGATGCCAACATAAAGAACTACAGTCTGCGAAAGCTTTCCAAGAT
CTTGTCCACGACCAAGGAGGAAGACGCGGCTTGCTCTGCGTCCACATCTG
GATCTGGATCTGGCTTGGGATCTGGATCTAGTATGGTGTCCGATTCGGTA
TCGATATCCCCCAGGGACAGTACCGTGACCAATGGTGACGATAAGCAATC
TAGCAAGAACGCCGTTCAGGGTAAGCGGGAACTGTTTGATGGCAATGCCA
GTGTTCGTGCCAAATTGGCCTTTGATGTGGCCCTTCAGCTGAGCAACTCC
GACGGCAAGCCGGAACCAAAAAGCTCGGAGGCATTGGAGAATATGTTTAA
TGCCATACGTCCGTTTGCCAAGTTGGTGGTGTCCGATGTCCTGGAGCTGG
ATATCCAGATCGAAAATTTGGAGCGTCAAAACTCCTTCCGTCCGGTGTTC
CTGAACTACTTCAAGACCACTCTGTACCATCGTGTGCGTGCCGTAAAGTT
CCGCATTGTGCTGGCCGAGAATGGGTTCGATTTGAACACGCTAAGTGCCA
TCTGGGCAGAGAAAAACATCGAGGGCCTGGACATAGCCCTGCAGTCAATT
GGCCGGCTAAAGAGCAAGGACAAGGCGGAGCTGCTCGAGCTTCTGGACAG
CTATTTCGATCCCAAGAAGACCACGGTGAAGCCGGTTGTCAAGGGTAACA
GCAACAATAATAACAATTATCGTCGTCGCAATCGACGCGGCGGCCGCCAA
TCGGTGAAGGACGCTAGGCCATCCAGCTCCCCATCGGCTAGCACCGAGTT
TGGAGCAGGAGGTGACAAGTCGCGCAGCGTTTCCTCGTTGCCCGACTCTA
CTACCAAGACTCCCTCGCCAAACAAGCCGCGTATGCACCGTAAGCGCAAC
TCGCGTCAAAGCTTGGGTGCAACCCCCAATGGACTCAAGGTTGCTGCTGA
AATATCCTCCTCAGGCGTGTCTGAGCTCAACAATAGCGCTCCACCTGCCG
TAACCATAAGCCCAGTCGTGGCACAACCCTCACCGACACCGGTGGCCATC
ACGGCCTCCAACTAAAAGCTTTCTAGACCAT
BS08131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 1599 | CG8994-PD | 1..1599 | 17..1615 | 7995 | 100 | Plus |
exu-RC | 1599 | CG8994-PC | 1..1599 | 17..1615 | 7995 | 100 | Plus |
exu-RB | 1599 | CG8994-PB | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 2631 | CG8994-RD | 152..1752 | 17..1617 | 8005 | 100 | Plus |
exu-RC | 2621 | CG8994-RC | 142..1742 | 17..1617 | 8005 | 100 | Plus |
exu-RB | 1988 | CG8994-RB | 142..1742 | 17..1617 | 8005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20668598..20669897 | 1617..318 | 6500 | 100 | Minus |
2R | 25286936 | 2R | 20669979..20670133 | 319..165 | 775 | 100 | Minus |
2R | 25286936 | 2R | 20670201..20670350 | 166..17 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:49 has no hits.
BS08131.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:07 Download gff for
BS08131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RC | 1..1599 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:12 Download gff for
BS08131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RC | 23..1637 | 10..1624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:03 Download gff for
BS08131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 142..1738 | 17..1613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:07 Download gff for
BS08131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RC | 23..1637 | 10..1624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:51 Download gff for
BS08131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 142..1738 | 17..1613 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:51 Download gff for
BS08131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20668602..20669895 | 320..1613 | 100 | <- | Minus |
2R | 20669979..20670131 | 167..319 | 100 | <- | Minus |
2R | 20670201..20670350 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:03 Download gff for
BS08131.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16556107..16557400 | 320..1613 | 100 | <- | Minus |
arm_2R | 16557484..16557636 | 167..319 | 100 | <- | Minus |
arm_2R | 16557706..16557855 | 17..166 | 100 | | Minus |
BS08131.pep Sequence
Translation from 16 to 1614
> BS08131.pep
MVADNIDAGVAIAVADQSSSPVGDKVELPAGNYILVGVDIDTTGRRLMDE
IVQLAAYTPTDHFEQYIMPYMNLNPAARQRHQVRVISIGFYRMLKSMQTY
KIIKSKSEIAALKDFLNWLEQLKTKAGPSSDGIVLIYHEERKFIPYMILE
SLKKYGLLERFTASVKSFANSINLAKASIGDANIKNYSLRKLSKILSTTK
EEDAACSASTSGSGSGLGSGSSMVSDSVSISPRDSTVTNGDDKQSSKNAV
QGKRELFDGNASVRAKLAFDVALQLSNSDGKPEPKSSEALENMFNAIRPF
AKLVVSDVLELDIQIENLERQNSFRPVFLNYFKTTLYHRVRAVKFRIVLA
ENGFDLNTLSAIWAEKNIEGLDIALQSIGRLKSKDKAELLELLDSYFDPK
KTTVKPVVKGNSNNNNNYRRRNRRGGRQSVKDARPSSSPSASTEFGAGGD
KSRSVSSLPDSTTKTPSPNKPRMHRKRNSRQSLGATPNGLKVAAEISSSG
VSELNNSAPPAVTISPVVAQPSPTPVAITASN*
BS08131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-PD | 532 | CG8994-PD | 1..532 | 1..532 | 2660 | 100 | Plus |
exu-PC | 532 | CG8994-PC | 1..532 | 1..532 | 2660 | 100 | Plus |
exu-PB | 532 | CG8994-PB | 1..532 | 1..532 | 2660 | 100 | Plus |
exu-PA | 532 | CG8994-PA | 1..532 | 1..532 | 2660 | 100 | Plus |