Clone Sequence Records
BS08132.3prime Sequence
838 bp (836 high quality bases) assembled on 2006-01-06
> BS08132.3prime
ATGGTCTAGAAAGCTTCTACTTCCTGGGCAGGCGACCAGCACGCTCCATG
GTGGCATCCTGGAGCTCCCAGGCGGGCCGATAGCCACCCAGATCGCAGGA
GCAGACGGCATCGGAATTAGAACCACATTCACACTCGGCATCGGTGCGTC
GGAGGTGCGGATTAGGCACTGTGTTCGCACGATTCCCGATCGAGGTGTAG
CCCCGATCGTACAGGCTGCAATAGGGCACCGAGTTCAAGTGGATGTAGTG
CCAGACGTCGTGGTAGCTCCACTCCAGCAGCGGATTCAGGCGCATCATCG
GCGGCCAGTCGTTGTCCGTGGGCTGCATGGGCGCCAGATGCTGGCAGTAG
GGATCCGTGTTGCGGCTGCCCACGAAGACGGCCTTGATCCGCGGCATGTC
CGACGACATGTGGGTGAGTGCCTCCTTGAGCGTACCCTCGTACTGAACCA
ACTGGACGCGGTAGTTGCGTACGCAACGCTCGACGAACTCATCGATTTCC
GGAAACGAATCGCCGGATTTAATGTACAGCATGGGAATGTCGCCGCTGGA
GATGTTCTCCTGGCGCAGGTAACGCATAAGGAGATCGAGCAGCACGGTGC
AATCCTTGCCGCCGTTGAAACAGAAAATTAGCTCCTCGACGCCGTAGATT
TGCAGGGTTTCGGCGAAGAAGGCGAACGCTTTATTTTGCCGCTCCTCAAT
GGCCAGTCGATCCTCGGCTGTTAGTTCCATTGGATTTGATATATCCTGTC
CCTTTGCCACATCCTTGGAGTTCTCCGAACGATCCGACATGCTCCGTTTC
TCTAGAAACAAATGCTTTTTGCTAATGCTCTTTGCGCA
BS08132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-PA | 969 | CG4407-RA | 148..969 | 838..17 | 4110 | 100 | Minus |
CG4407-PB | 885 | CG4407-RB | 64..885 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RB | 1235 | CG4407-RB | 221..1042 | 838..17 | 4110 | 100 | Minus |
CG4407-RA | 1338 | CG4407-RA | 324..1145 | 838..17 | 4110 | 100 | Minus |
CG16848-RA | 1198 | CG16848-RA | 550..670 | 315..195 | 185 | 76.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12902316..12902831 | 323..838 | 2580 | 100 | Plus |
X | 23542271 | X | 12901546..12901853 | 17..324 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13413068..13413188 | 315..195 | 185 | 76.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:47:00 has no hits.
BS08132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:30 Download gff for
BS08132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PB | 65..885 | 17..837 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:49 Download gff for
BS08132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PB | 65..885 | 17..837 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:51 Download gff for
BS08132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 325..1149 | 11..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:45 Download gff for
BS08132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 325..1149 | 11..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:45 Download gff for
BS08132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12901542..12901851 | 11..322 | 99 | <- | Plus |
X | 12902316..12902830 | 323..837 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:51 Download gff for
BS08132.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12795575..12795884 | 11..322 | 99 | <- | Plus |
arm_X | 12796349..12796863 | 323..837 | 100 | | Plus |
BS08132.5prime Sequence
930 bp (849 high quality bases) assembled on 2006-01-06
> BS08132.5prime
GAAGTTATCAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGC
TAGCCAGGGCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACC
ATGAACGAATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAA
CAACAGCATTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAG
AGAAACGGAGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAG
GGACAGGATATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGC
CATTGAGGAGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGC
AAATCTACGGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGAT
TGCACCGTGCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACAT
CTCCAGCGGCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTC
CGGAAATCGATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAG
TTGGTTCAGTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTC
GGACATGCCGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATC
CCTACTGCCAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCG
CCGATGATGCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTG
GCACTACATCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGG
GCTACACCTCGATCGGGAATCGTGCGAACACAGTGCCTAATCCGCACCTC
CGACGCACCGATGCCGAGTGTGAATGTGGTTCTAATCCGATGCCGTCTGC
TCCTGCGATCTGGGTGGCTATCGGCCCGCC
BS08132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-PA | 969 | CG4407-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
CG4407-PB | 885 | CG4407-RB | 1..786 | 101..886 | 3930 | 100 | Plus |
CG4407-PA | 969 | CG4407-RA | 871..915 | 886..930 | 225 | 100 | Plus |
CG4407-PB | 885 | CG4407-RB | 787..831 | 886..930 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RA | 1338 | CG4407-RA | 175..1091 | 15..930 | 4560 | 99.9 | Plus |
CG4407-RB | 1235 | CG4407-RB | 86..988 | 29..930 | 4490 | 99.9 | Plus |
CG16848-RA | 1198 | CG16848-RA | 550..670 | 687..807 | 185 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12902316..12902967 | 679..28 | 3260 | 100 | Minus |
X | 23542271 | X | 12901600..12901853 | 930..678 | 1220 | 99.6 | Minus |
2L | 23513712 | 2L | 13413068..13413188 | 687..807 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:54:56 has no hits.
BS08132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:31 Download gff for
BS08132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PA | 1..915 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:50 Download gff for
BS08132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PA | 1..915 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:31 Download gff for
BS08132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 175..1091 | 15..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:52 Download gff for
BS08132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 175..1091 | 15..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:52 Download gff for
BS08132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12901600..12901851 | 680..930 | 99 | <- | Minus |
X | 12902316..12902966 | 29..679 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:31 Download gff for
BS08132.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12795633..12795884 | 680..930 | 99 | <- | Minus |
arm_X | 12796349..12796999 | 29..679 | 100 | <- | Minus |
BS08132.complete Sequence
1001 bp (1001 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636109
> BS08132.complete
GAAGTTATCAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGC
TAGCCAGGGCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACC
ATGAACGAATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAA
CAACAGCATTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAG
AGAAACGGAGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAG
GGACAGGATATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGC
CATTGAGGAGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGC
AAATCTACGGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGAT
TGCACCGTGCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACAT
CTCCAGCGGCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTC
CGGAAATCGATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAG
TTGGTTCAGTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTC
GGACATGCCGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATC
CCTACTGCCAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCG
CCGATGATGCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTG
GCACTACATCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGG
GCTACACCTCGATCGGGAATCGTGCGAACACAGTGCCTAATCCGCACCTC
CGACGCACCGATGCCGAGTGTGAATGTGGTTCTAATTCCGATGCCGTCTG
CTCCTGCGATCTGGGTGGCTATCGGCCCGCCTGGGAGCTCCAGGATGCCA
CCATGGAGCGTGCTGGTCGCCTGCCCAGGAAGTAGAAGCTTTCTAGACCA
T
BS08132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RA | 969 | CG4407-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
CG4407-RB | 885 | CG4407-PB | 1..885 | 101..985 | 4425 | 100 | Plus |
CG16848-RA | 765 | CG16848-PA | 476..596 | 687..807 | 185 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RA | 1338 | CG4407-RA | 175..1145 | 15..985 | 4855 | 100 | Plus |
CG4407-RB | 1235 | CG4407-RB | 86..1042 | 29..985 | 4785 | 100 | Plus |
CG16848-RA | 1198 | CG16848-RA | 550..670 | 687..807 | 185 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12902316..12902967 | 679..28 | 3260 | 100 | Minus |
X | 23542271 | X | 12901546..12901853 | 985..678 | 1540 | 100 | Minus |
2L | 23513712 | 2L | 13413068..13413188 | 687..807 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:10:42 has no hits.
BS08132.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:08 Download gff for
BS08132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:26 Download gff for
BS08132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 142..1116 | 15..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:47 Download gff for
BS08132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 177..1145 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:08 Download gff for
BS08132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 142..1116 | 15..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:56 Download gff for
BS08132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 177..1145 | 17..985 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:56 Download gff for
BS08132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12901546..12901851 | 680..985 | 100 | <- | Minus |
X | 12902316..12902972 | 23..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:47 Download gff for
BS08132.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12795579..12795884 | 680..985 | 100 | <- | Minus |
arm_X | 12796349..12797005 | 23..679 | 99 | | Minus |
BS08132.pep Sequence
Translation from 16 to 984
> BS08132.pep
MSYWRVTSSFLLARARPRLPQTLRPLSTMNECRKNITNITNITANNSILC
AKSISKKHLFLEKRSMSDRSENSKDVAKGQDISNPMELTAEDRLAIEERQ
NKAFAFFAETLQIYGVEELIFCFNGGKDCTVLLDLLMRYLRQENISSGDI
PMLYIKSGDSFPEIDEFVERCVRNYRVQLVQYEGTLKEALTHMSSDMPRI
KAVFVGSRNTDPYCQHLAPMQPTDNDWPPMMRLNPLLEWSYHDVWHYIHL
NSVPYCSLYDRGYTSIGNRANTVPNPHLRRTDAECECGSNSDAVCSCDLG
GYRPAWELQDATMERAGRLPRK*
BS08132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-PA | 322 | CG4407-PA | 1..322 | 1..322 | 1724 | 100 | Plus |
CG4407-PB | 294 | CG4407-PB | 1..294 | 29..322 | 1581 | 100 | Plus |
CG16848-PA | 254 | CG16848-PA | 50..241 | 111..318 | 471 | 43.3 | Plus |