Clone BS08132 Report

Search the DGRC for BS08132

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG4407-RA
Protein status:BS08132.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08132.3prime Sequence

838 bp (836 high quality bases) assembled on 2006-01-06

> BS08132.3prime
ATGGTCTAGAAAGCTTCTACTTCCTGGGCAGGCGACCAGCACGCTCCATG
GTGGCATCCTGGAGCTCCCAGGCGGGCCGATAGCCACCCAGATCGCAGGA
GCAGACGGCATCGGAATTAGAACCACATTCACACTCGGCATCGGTGCGTC
GGAGGTGCGGATTAGGCACTGTGTTCGCACGATTCCCGATCGAGGTGTAG
CCCCGATCGTACAGGCTGCAATAGGGCACCGAGTTCAAGTGGATGTAGTG
CCAGACGTCGTGGTAGCTCCACTCCAGCAGCGGATTCAGGCGCATCATCG
GCGGCCAGTCGTTGTCCGTGGGCTGCATGGGCGCCAGATGCTGGCAGTAG
GGATCCGTGTTGCGGCTGCCCACGAAGACGGCCTTGATCCGCGGCATGTC
CGACGACATGTGGGTGAGTGCCTCCTTGAGCGTACCCTCGTACTGAACCA
ACTGGACGCGGTAGTTGCGTACGCAACGCTCGACGAACTCATCGATTTCC
GGAAACGAATCGCCGGATTTAATGTACAGCATGGGAATGTCGCCGCTGGA
GATGTTCTCCTGGCGCAGGTAACGCATAAGGAGATCGAGCAGCACGGTGC
AATCCTTGCCGCCGTTGAAACAGAAAATTAGCTCCTCGACGCCGTAGATT
TGCAGGGTTTCGGCGAAGAAGGCGAACGCTTTATTTTGCCGCTCCTCAAT
GGCCAGTCGATCCTCGGCTGTTAGTTCCATTGGATTTGATATATCCTGTC
CCTTTGCCACATCCTTGGAGTTCTCCGAACGATCCGACATGCTCCGTTTC
TCTAGAAACAAATGCTTTTTGCTAATGCTCTTTGCGCA

BS08132.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-PA 969 CG4407-RA 148..969 838..17 4110 100 Minus
CG4407-PB 885 CG4407-RB 64..885 838..17 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-RB 1235 CG4407-RB 221..1042 838..17 4110 100 Minus
CG4407-RA 1338 CG4407-RA 324..1145 838..17 4110 100 Minus
CG16848-RA 1198 CG16848-RA 550..670 315..195 185 76.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12902316..12902831 323..838 2580 100 Plus
X 23542271 X 12901546..12901853 17..324 1540 100 Plus
2L 23513712 2L 13413068..13413188 315..195 185 76.9 Minus
Blast to na_te.dros performed on 2015-02-10 18:47:00 has no hits.

BS08132.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:30 Download gff for BS08132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-PB 65..885 17..837 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:49 Download gff for BS08132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-PB 65..885 17..837 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:02:51 Download gff for BS08132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 325..1149 11..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:45 Download gff for BS08132.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 325..1149 11..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:45 Download gff for BS08132.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12901542..12901851 11..322 99 <- Plus
X 12902316..12902830 323..837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:02:51 Download gff for BS08132.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12795575..12795884 11..322 99 <- Plus
arm_X 12796349..12796863 323..837 100   Plus

BS08132.5prime Sequence

930 bp (849 high quality bases) assembled on 2006-01-06

> BS08132.5prime
GAAGTTATCAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGC
TAGCCAGGGCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACC
ATGAACGAATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAA
CAACAGCATTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAG
AGAAACGGAGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAG
GGACAGGATATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGC
CATTGAGGAGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGC
AAATCTACGGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGAT
TGCACCGTGCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACAT
CTCCAGCGGCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTC
CGGAAATCGATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAG
TTGGTTCAGTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTC
GGACATGCCGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATC
CCTACTGCCAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCG
CCGATGATGCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTG
GCACTACATCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGG
GCTACACCTCGATCGGGAATCGTGCGAACACAGTGCCTAATCCGCACCTC
CGACGCACCGATGCCGAGTGTGAATGTGGTTCTAATCCGATGCCGTCTGC
TCCTGCGATCTGGGTGGCTATCGGCCCGCC

BS08132.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-PA 969 CG4407-RA 1..870 17..886 4350 100 Plus
CG4407-PB 885 CG4407-RB 1..786 101..886 3930 100 Plus
CG4407-PA 969 CG4407-RA 871..915 886..930 225 100 Plus
CG4407-PB 885 CG4407-RB 787..831 886..930 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-RA 1338 CG4407-RA 175..1091 15..930 4560 99.9 Plus
CG4407-RB 1235 CG4407-RB 86..988 29..930 4490 99.9 Plus
CG16848-RA 1198 CG16848-RA 550..670 687..807 185 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12902316..12902967 679..28 3260 100 Minus
X 23542271 X 12901600..12901853 930..678 1220 99.6 Minus
2L 23513712 2L 13413068..13413188 687..807 185 76.9 Plus
Blast to na_te.dros performed on 2015-02-11 17:54:56 has no hits.

BS08132.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:31 Download gff for BS08132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-PA 1..915 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:31:50 Download gff for BS08132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-PA 1..915 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:22:31 Download gff for BS08132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 175..1091 15..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:52 Download gff for BS08132.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 175..1091 15..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:52 Download gff for BS08132.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12901600..12901851 680..930 99 <- Minus
X 12902316..12902966 29..679 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:22:31 Download gff for BS08132.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12795633..12795884 680..930 99 <- Minus
arm_X 12796349..12796999 29..679 100 <- Minus

BS08132.complete Sequence

1001 bp (1001 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636109

> BS08132.complete
GAAGTTATCAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGC
TAGCCAGGGCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACC
ATGAACGAATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAA
CAACAGCATTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAG
AGAAACGGAGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAG
GGACAGGATATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGC
CATTGAGGAGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGC
AAATCTACGGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGAT
TGCACCGTGCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACAT
CTCCAGCGGCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTC
CGGAAATCGATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAG
TTGGTTCAGTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTC
GGACATGCCGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATC
CCTACTGCCAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCG
CCGATGATGCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTG
GCACTACATCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGG
GCTACACCTCGATCGGGAATCGTGCGAACACAGTGCCTAATCCGCACCTC
CGACGCACCGATGCCGAGTGTGAATGTGGTTCTAATTCCGATGCCGTCTG
CTCCTGCGATCTGGGTGGCTATCGGCCCGCCTGGGAGCTCCAGGATGCCA
CCATGGAGCGTGCTGGTCGCCTGCCCAGGAAGTAGAAGCTTTCTAGACCA
T

BS08132.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-RA 969 CG4407-PA 1..969 17..985 4845 100 Plus
CG4407-RB 885 CG4407-PB 1..885 101..985 4425 100 Plus
CG16848-RA 765 CG16848-PA 476..596 687..807 185 76.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-RA 1338 CG4407-RA 175..1145 15..985 4855 100 Plus
CG4407-RB 1235 CG4407-RB 86..1042 29..985 4785 100 Plus
CG16848-RA 1198 CG16848-RA 550..670 687..807 185 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12902316..12902967 679..28 3260 100 Minus
X 23542271 X 12901546..12901853 985..678 1540 100 Minus
2L 23513712 2L 13413068..13413188 687..807 185 76.9 Plus
Blast to na_te.dros performed on 2014-11-27 07:10:42 has no hits.

BS08132.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:08 Download gff for BS08132.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:26 Download gff for BS08132.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 142..1116 15..991 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:47 Download gff for BS08132.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 177..1145 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:08 Download gff for BS08132.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 142..1116 15..991 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:56 Download gff for BS08132.complete
Subject Subject Range Query Range Percent Splice Strand
CG4407-RA 177..1145 17..985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:56 Download gff for BS08132.complete
Subject Subject Range Query Range Percent Splice Strand
X 12901546..12901851 680..985 100 <- Minus
X 12902316..12902972 23..679 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:47 Download gff for BS08132.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12795579..12795884 680..985 100 <- Minus
arm_X 12796349..12797005 23..679 99   Minus

BS08132.pep Sequence

Translation from 16 to 984

> BS08132.pep
MSYWRVTSSFLLARARPRLPQTLRPLSTMNECRKNITNITNITANNSILC
AKSISKKHLFLEKRSMSDRSENSKDVAKGQDISNPMELTAEDRLAIEERQ
NKAFAFFAETLQIYGVEELIFCFNGGKDCTVLLDLLMRYLRQENISSGDI
PMLYIKSGDSFPEIDEFVERCVRNYRVQLVQYEGTLKEALTHMSSDMPRI
KAVFVGSRNTDPYCQHLAPMQPTDNDWPPMMRLNPLLEWSYHDVWHYIHL
NSVPYCSLYDRGYTSIGNRANTVPNPHLRRTDAECECGSNSDAVCSCDLG
GYRPAWELQDATMERAGRLPRK*

BS08132.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4407-PA 322 CG4407-PA 1..322 1..322 1724 100 Plus
CG4407-PB 294 CG4407-PB 1..294 29..322 1581 100 Plus
CG16848-PA 254 CG16848-PA 50..241 111..318 471 43.3 Plus