Clone Sequence Records
BS08142.3prime Sequence
853 bp (819 high quality bases) assembled on 2006-01-06
> BS08142.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGGCATACCCGTTTGGGTTCTGGCTC
TGCCAGCGCCACGTGTCCTCGCACATCTTGTCGATGCCACGCTCGGCCTT
CCAGCCCAGCTTCTTATCCGCCAACGTGGCGTCCGCATAGCAAGTGGCCA
CATCTCCGGACCGTCGGTCCACCAGAGTGTAGTTGACCTTCTTGCCGGAG
GCCTTCTCAAACGCCTTCACCATGTCCAGCACCGAGTAGCCCACGCCGGT
GCCCAAATTGTAGGCGAAAAAGCCCGTCTCCGCGATGTTGCGCAGCTTGT
CCAACGCCTTTACGTGTCCCTCGGCCAGGTCCACGATGTGGATGTAATCG
CGCACGCCGGTGCCGTCGTGCGTGGGAAAGTCGCTGCCGTAGACACTCAG
GCTGGGACGTCGACCCACGGCCACCTGTGCGATGTAGGGCATCAGGTTGT
TGGGCTCGCCGTTCGGATCCTCGCCAATCCGACCACTGATGTGGGCACCC
ACCGGGTTGAAGTACCGCAGCGAAACCACTGCCCAACGCTTGTCAGACTT
GCACAGATCCTTGAGAATCTCCTCGGTGAAATATTTAGTCTTGCCGTAGG
GCGATGTACAGTTGCCCGTGGGATGCTCCTCGGTCACGGGCAGGAACTTT
GGCTCACCGTATACGGTGGCGCTGGAGCTGTACACGAACTTGAAGACATT
GTTGTCGGCCATCGCCTCCAGCAGGACATTGGTGCCGGTCATGTTGTTGT
GGTAGTACTGCAAAGGTATGCGGCAGGACTCACCCACGGCCTTCAGGGCG
GCAAAGTGGGCCACCATGTCGATTTTGTGCTCCTGGAAGACGGAGCGCAC
CTG
BS08142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12030-PA | 1053 | CG12030-RA | 217..1053 | 853..17 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 496..1333 | 853..16 | 4190 | 100 | Minus |
Gale-RA | 1757 | CG12030-RA | 715..1552 | 853..16 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..651106 | 540..16 | 2625 | 100 | Minus |
3L | 28110227 | 3L | 650231..650523 | 831..539 | 1465 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:42:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 663..701 | 123 | 79.5 | Plus |
BS08142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:52 Download gff for
BS08142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 217..1053 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:18 Download gff for
BS08142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 217..1053 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:31 Download gff for
BS08142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 715..1560 | 7..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:52 Download gff for
BS08142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 715..1560 | 7..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:52 Download gff for
BS08142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 649396..649419 | 830..853 | 100 | -> | Minus |
3L | 650233..650523 | 539..829 | 100 | -> | Minus |
3L | 650584..651114 | 7..538 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:31 Download gff for
BS08142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649396..649419 | 830..853 | 100 | -> | Minus |
arm_3L | 650233..650523 | 539..829 | 100 | -> | Minus |
arm_3L | 650584..651114 | 7..538 | 99 | | Minus |
BS08142.5prime Sequence
879 bp (805 high quality bases) assembled on 2006-01-06
> BS08142.5prime
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGA
BS08142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12030-PA | 1053 | CG12030-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 280..1142 | 17..879 | 4315 | 100 | Plus |
Gale-RA | 1757 | CG12030-RA | 499..1361 | 17..879 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..650915 | 546..879 | 1670 | 100 | Plus |
3L | 28110227 | 3L | 650231..650523 | 255..547 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 649180..649419 | 17..256 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 423..385 | 123 | 79.5 | Minus |
BS08142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:53 Download gff for
BS08142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:20 Download gff for
BS08142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:45 Download gff for
BS08142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 495..1360 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:58 Download gff for
BS08142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 495..1360 | 9..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:58 Download gff for
BS08142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 650584..650914 | 548..878 | 100 | | Plus |
3L | 649180..649419 | 17..256 | 100 | -> | Plus |
3L | 650233..650523 | 257..547 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:45 Download gff for
BS08142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649180..649419 | 17..256 | 100 | -> | Plus |
arm_3L | 650233..650523 | 257..547 | 100 | -> | Plus |
arm_3L | 650584..650914 | 548..878 | 100 | | Plus |
BS08142.complete Sequence
1085 bp (1085 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636111
> BS08142.complete
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGCAAGAAGGT
CAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCACTTGCTATG
CGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCGAGCGTGGC
ATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAGAACCCAAA
CGGGTATGCCAACAAGTAGAAGCTTTCTAGACCAT
BS08142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1053 | CG12030-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Gale-RA | 1053 | CG12030-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 280..1333 | 17..1070 | 5270 | 100 | Plus |
Gale-RA | 1757 | CG12030-RA | 499..1552 | 17..1070 | 5270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..651106 | 546..1070 | 2625 | 100 | Plus |
3L | 28110227 | 3L | 650231..650523 | 255..547 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 649180..649419 | 17..256 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 423..385 | 123 | 79.5 | Minus |
BS08142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:09 Download gff for
BS08142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-RA | 1..1053 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:13 Download gff for
BS08142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-RA | 533..1598 | 9..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:02 Download gff for
BS08142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 499..1551 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:09 Download gff for
BS08142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-RA | 533..1598 | 9..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:21 Download gff for
BS08142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 499..1551 | 17..1069 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:21 Download gff for
BS08142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 649180..649419 | 17..256 | 100 | -> | Plus |
3L | 650233..650523 | 257..547 | 100 | -> | Plus |
3L | 650584..651105 | 548..1069 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:02 Download gff for
BS08142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649180..649419 | 17..256 | 100 | -> | Plus |
arm_3L | 650233..650523 | 257..547 | 100 | -> | Plus |
arm_3L | 650584..651105 | 548..1069 | 100 | | Plus |
BS08142.pep Sequence
Translation from 16 to 1068
> BS08142.pep
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
*
BS08142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-PB | 350 | CG12030-PB | 1..350 | 1..350 | 1861 | 100 | Plus |
Gale-PA | 350 | CG12030-PA | 1..350 | 1..350 | 1861 | 100 | Plus |