Clone BS08142 Report

Search the DGRC for BS08142

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptGale-RA
Protein status:BS08142.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08142.3prime Sequence

853 bp (819 high quality bases) assembled on 2006-01-06

> BS08142.3prime
ATGGTCTAGAAAGCTTCTACTTGTTGGCATACCCGTTTGGGTTCTGGCTC
TGCCAGCGCCACGTGTCCTCGCACATCTTGTCGATGCCACGCTCGGCCTT
CCAGCCCAGCTTCTTATCCGCCAACGTGGCGTCCGCATAGCAAGTGGCCA
CATCTCCGGACCGTCGGTCCACCAGAGTGTAGTTGACCTTCTTGCCGGAG
GCCTTCTCAAACGCCTTCACCATGTCCAGCACCGAGTAGCCCACGCCGGT
GCCCAAATTGTAGGCGAAAAAGCCCGTCTCCGCGATGTTGCGCAGCTTGT
CCAACGCCTTTACGTGTCCCTCGGCCAGGTCCACGATGTGGATGTAATCG
CGCACGCCGGTGCCGTCGTGCGTGGGAAAGTCGCTGCCGTAGACACTCAG
GCTGGGACGTCGACCCACGGCCACCTGTGCGATGTAGGGCATCAGGTTGT
TGGGCTCGCCGTTCGGATCCTCGCCAATCCGACCACTGATGTGGGCACCC
ACCGGGTTGAAGTACCGCAGCGAAACCACTGCCCAACGCTTGTCAGACTT
GCACAGATCCTTGAGAATCTCCTCGGTGAAATATTTAGTCTTGCCGTAGG
GCGATGTACAGTTGCCCGTGGGATGCTCCTCGGTCACGGGCAGGAACTTT
GGCTCACCGTATACGGTGGCGCTGGAGCTGTACACGAACTTGAAGACATT
GTTGTCGGCCATCGCCTCCAGCAGGACATTGGTGCCGGTCATGTTGTTGT
GGTAGTACTGCAAAGGTATGCGGCAGGACTCACCCACGGCCTTCAGGGCG
GCAAAGTGGGCCACCATGTCGATTTTGTGCTCCTGGAAGACGGAGCGCAC
CTG

BS08142.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12030-PA 1053 CG12030-RA 217..1053 853..17 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 496..1333 853..16 4190 100 Minus
Gale-RA 1757 CG12030-RA 715..1552 853..16 4190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..651106 540..16 2625 100 Minus
3L 28110227 3L 650231..650523 831..539 1465 100 Minus
Blast to na_te.dros performed 2015-02-11 11:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 663..701 123 79.5 Plus

BS08142.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:52 Download gff for BS08142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 217..1053 17..853 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:18 Download gff for BS08142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 217..1053 17..853 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:55:31 Download gff for BS08142.3prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 715..1560 7..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:52 Download gff for BS08142.3prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 715..1560 7..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:52 Download gff for BS08142.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 649396..649419 830..853 100 -> Minus
3L 650233..650523 539..829 100 -> Minus
3L 650584..651114 7..538 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:55:31 Download gff for BS08142.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649396..649419 830..853 100 -> Minus
arm_3L 650233..650523 539..829 100 -> Minus
arm_3L 650584..651114 7..538 99   Minus

BS08142.5prime Sequence

879 bp (805 high quality bases) assembled on 2006-01-06

> BS08142.5prime
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGA

BS08142.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12030-PA 1053 CG12030-RA 1..863 17..879 4315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 280..1142 17..879 4315 100 Plus
Gale-RA 1757 CG12030-RA 499..1361 17..879 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..650915 546..879 1670 100 Plus
3L 28110227 3L 650231..650523 255..547 1465 100 Plus
3L 28110227 3L 649180..649419 17..256 1200 100 Plus
Blast to na_te.dros performed 2015-02-13 00:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 423..385 123 79.5 Minus

BS08142.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:34:53 Download gff for BS08142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:20 Download gff for BS08142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 1..862 17..878 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:45 Download gff for BS08142.5prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 495..1360 9..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:58 Download gff for BS08142.5prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 495..1360 9..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:58 Download gff for BS08142.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 650584..650914 548..878 100   Plus
3L 649180..649419 17..256 100 -> Plus
3L 650233..650523 257..547 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:45 Download gff for BS08142.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649180..649419 17..256 100 -> Plus
arm_3L 650233..650523 257..547 100 -> Plus
arm_3L 650584..650914 548..878 100   Plus

BS08142.complete Sequence

1085 bp (1085 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636111

> BS08142.complete
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGCAAGAAGGT
CAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCACTTGCTATG
CGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCGAGCGTGGC
ATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAGAACCCAAA
CGGGTATGCCAACAAGTAGAAGCTTTCTAGACCAT

BS08142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1053 CG12030-PB 1..1053 17..1069 5265 100 Plus
Gale-RA 1053 CG12030-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 280..1333 17..1070 5270 100 Plus
Gale-RA 1757 CG12030-RA 499..1552 17..1070 5270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..651106 546..1070 2625 100 Plus
3L 28110227 3L 650231..650523 255..547 1465 100 Plus
3L 28110227 3L 649180..649419 17..256 1200 100 Plus
Blast to na_te.dros performed 2014-11-27 14:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 423..385 123 79.5 Minus

BS08142.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:04:09 Download gff for BS08142.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 1..1053 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:42:13 Download gff for BS08142.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 533..1598 9..1079 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:02 Download gff for BS08142.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 499..1551 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:04:09 Download gff for BS08142.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 533..1598 9..1079 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:21 Download gff for BS08142.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 499..1551 17..1069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:21 Download gff for BS08142.complete
Subject Subject Range Query Range Percent Splice Strand
3L 649180..649419 17..256 100 -> Plus
3L 650233..650523 257..547 100 -> Plus
3L 650584..651105 548..1069 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:02 Download gff for BS08142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649180..649419 17..256 100 -> Plus
arm_3L 650233..650523 257..547 100 -> Plus
arm_3L 650584..651105 548..1069 100   Plus

BS08142.pep Sequence

Translation from 16 to 1068

> BS08142.pep
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
*

BS08142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-PB 350 CG12030-PB 1..350 1..350 1861 100 Plus
Gale-PA 350 CG12030-PA 1..350 1..350 1861 100 Plus