Clone BS08147 Report

Search the DGRC for BS08147

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:81
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10898-RA
Protein status:BS08147.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08147.3prime Sequence

880 bp (820 high quality bases) assembled on 2006-01-06

> BS08147.3prime
ATGGTCTAGAAAGCTTTTAGCGCACCACATTCAGCGGAATGGATGCGTTC
TTGCTGCTGACGATACGTCCCAGCATCTCGTCAAGTGGCGCACCCAGTTC
CTGCCAAATGCACTTGCCGATCAGCGAGATTTCCTCCAGTGGCGGTCGGA
AAGCCACCAGCAGATTAAGGCATATTCCATCAGTGTTCTCCTGCTCCGAA
GCTGAGTGCTCCACGCTAAGTAAGCCATGTGGTCGATGCTGTGGCAGCTC
CGCACCAAAAATCTCAATCATGAACTTGCGCAGCGTAGAGTGCAGGCTGC
GATTCGGATGCAGTTCGACCGTGGGAAAGTGGTGGGCGTTCTTTTCACTG
ACCAGGATGTTCAGCGAGTTGTGTGCTCGCTTTCTGGCTACAGCCAGAAC
CCGCAGATAGTTACGTTTGTGGGCGAAACGTGTGGGCAGTATGGTCCCAT
GCCAGGGTGAAGGGCTAATGGCAATCTTTTGCCCCTGATGATACGCCCTT
CCAATCTCAATGATACTGAGTATGTCGTTGGCTCGGAGAGGTACTTCCTT
GGGATTACGCACCCATCTCGCCTGAATCGATTCGGCGTCTGCATCCGCAG
GAGTTTTAAGTCGGCCGCCTGTGATGCGTCCAGTGAGCACGAAGCGGAAC
CAAGAGCCACCGGCGGCCTCCACCGCTAATAGAGTGGTCAGCTCGGCATT
TAGACCAGTCTCTTCGAAAACTTCCCGGGCGGCTGCCTCCGTGATGGATT
CGCCCCTTTCCATGCGACCAGCGGGTAAGTACCACTTGCCGGCACAGCTC
TGTTTGGCCTCCTCGATCATCAGAAGCTCGTCGTGCTCATTGATCAACAC
ACAGGCCACAATATAGGTGACTGTCTGTCA

BS08147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 1023 CG10898-RA 161..1023 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1969 CG10898-RA 759..1623 879..15 4325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11558756..11559531 790..15 3880 100 Minus
3R 32079331 3R 11558595..11558685 879..789 455 100 Minus
Blast to na_te.dros performed on 2015-02-03 11:35:39 has no hits.

BS08147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:00 Download gff for BS08147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 161..1023 17..879 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:29 Download gff for BS08147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 161..1023 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:35 Download gff for BS08147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 806..1680 4..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:38 Download gff for BS08147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 759..1633 4..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:38 Download gff for BS08147.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11558595..11558684 790..879 100 -> Minus
3R 11558757..11559541 4..789 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:35 Download gff for BS08147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7384317..7384406 790..879 100 -> Minus
arm_3R 7384479..7385263 4..789 99   Minus

BS08147.5prime Sequence

966 bp (827 high quality bases) assembled on 2006-01-06

> BS08147.5prime
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGGAGAACACTGATGGGATATGCCTTAATCTGCTGGT
GGCTTTCCGACCCGCACTGGAGGGAATCTCGCTGATCGGCAAGTGCATTT
GGCAGGAACTGGGGTG

BS08147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 1023 CG10898-RA 1..947 17..963 4635 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1969 CG10898-RA 599..1545 17..963 4675 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11558756..11559453 266..963 3430 99.4 Plus
3R 32079331 3R 11558435..11558685 17..267 1255 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:00:55 has no hits.

BS08147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:02 Download gff for BS08147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 1..949 17..966 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:30 Download gff for BS08147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-PA 1..949 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:41 Download gff for BS08147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 642..1594 9..966 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:41 Download gff for BS08147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 595..1547 9..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:41 Download gff for BS08147.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11558431..11558684 9..266 98 -> Plus
3R 11558757..11559455 267..966 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:41 Download gff for BS08147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7384153..7384406 9..266 98 -> Plus
arm_3R 7384479..7385177 267..966 99   Plus

BS08147.complete Sequence

1055 bp (1055 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ636112

> BS08147.complete
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGGAGAACACTGATGGAATATGCCTTAATCTGCTGGT
GGCTTTCCGACCGCCACTGGAGGAAATCTCGCTGATCGGCAAGTGCATTT
GGCAGGAACTGGGTGCGCCACTTGACGAGATGCTGGGACGTATCGTCAGC
AGCAAGAACGCATCCATTCCGCTGAATGTGGTGCGCTAAAAGCTTTCTAG
ACCAT

BS08147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1023 CG10898-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-RA 1969 CG10898-RA 599..1623 17..1041 5125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11558756..11559531 266..1041 3880 100 Plus
3R 32079331 3R 11558435..11558685 17..267 1255 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:58:23 has no hits.

BS08147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:00 Download gff for BS08147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 1..1023 17..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:17 Download gff for BS08147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 642..1680 9..1052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:28 Download gff for BS08147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 646..1666 17..1037 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:00 Download gff for BS08147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 642..1680 9..1052 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:22 Download gff for BS08147.complete
Subject Subject Range Query Range Percent Splice Strand
CG10898-RA 599..1619 17..1037 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:22 Download gff for BS08147.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11558435..11558684 17..266 100 -> Plus
3R 11558757..11559527 267..1037 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:28 Download gff for BS08147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7384157..7384406 17..266 100 -> Plus
arm_3R 7384479..7385249 267..1037 100   Plus

BS08147.pep Sequence

Translation from 16 to 1038

> BS08147.pep
MASIVEKVRRILDSKDLGDITTELCDFSLKEQNATAEAQGVQPSSASDFV
PILGQTVTYIVACVLINEHDELLMIEEAKQSCAGKWYLPAGRMERGESIT
EAAAREVFEETGLNAELTTLLAVEAAGGSWFRFVLTGRITGGRLKTPADA
DAESIQARWVRNPKEVPLRANDILSIIEIGRAYHQGQKIAISPSPWHGTI
LPTRFAHKRNYLRVLAVARKRAHNSLNILVSEKNAHHFPTVELHPNRSLH
STLRKFMIEIFGAELPQHRPHGLLSVEHSASEQENTDGICLNLLVAFRPP
LEEISLIGKCIWQELGAPLDEMLGRIVSSKNASIPLNVVR*

BS08147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10898-PA 340 CG10898-PA 1..340 1..340 1743 100 Plus