Clone Sequence Records
BS08147.3prime Sequence
880 bp (820 high quality bases) assembled on 2006-01-06
> BS08147.3prime
ATGGTCTAGAAAGCTTTTAGCGCACCACATTCAGCGGAATGGATGCGTTC
TTGCTGCTGACGATACGTCCCAGCATCTCGTCAAGTGGCGCACCCAGTTC
CTGCCAAATGCACTTGCCGATCAGCGAGATTTCCTCCAGTGGCGGTCGGA
AAGCCACCAGCAGATTAAGGCATATTCCATCAGTGTTCTCCTGCTCCGAA
GCTGAGTGCTCCACGCTAAGTAAGCCATGTGGTCGATGCTGTGGCAGCTC
CGCACCAAAAATCTCAATCATGAACTTGCGCAGCGTAGAGTGCAGGCTGC
GATTCGGATGCAGTTCGACCGTGGGAAAGTGGTGGGCGTTCTTTTCACTG
ACCAGGATGTTCAGCGAGTTGTGTGCTCGCTTTCTGGCTACAGCCAGAAC
CCGCAGATAGTTACGTTTGTGGGCGAAACGTGTGGGCAGTATGGTCCCAT
GCCAGGGTGAAGGGCTAATGGCAATCTTTTGCCCCTGATGATACGCCCTT
CCAATCTCAATGATACTGAGTATGTCGTTGGCTCGGAGAGGTACTTCCTT
GGGATTACGCACCCATCTCGCCTGAATCGATTCGGCGTCTGCATCCGCAG
GAGTTTTAAGTCGGCCGCCTGTGATGCGTCCAGTGAGCACGAAGCGGAAC
CAAGAGCCACCGGCGGCCTCCACCGCTAATAGAGTGGTCAGCTCGGCATT
TAGACCAGTCTCTTCGAAAACTTCCCGGGCGGCTGCCTCCGTGATGGATT
CGCCCCTTTCCATGCGACCAGCGGGTAAGTACCACTTGCCGGCACAGCTC
TGTTTGGCCTCCTCGATCATCAGAAGCTCGTCGTGCTCATTGATCAACAC
ACAGGCCACAATATAGGTGACTGTCTGTCA
BS08147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-PA | 1023 | CG10898-RA | 161..1023 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1969 | CG10898-RA | 759..1623 | 879..15 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11558756..11559531 | 790..15 | 3880 | 100 | Minus |
3R | 32079331 | 3R | 11558595..11558685 | 879..789 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:35:39 has no hits.
BS08147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:00 Download gff for
BS08147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 161..1023 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:29 Download gff for
BS08147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 161..1023 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:35 Download gff for
BS08147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 806..1680 | 4..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:38 Download gff for
BS08147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 759..1633 | 4..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:38 Download gff for
BS08147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11558595..11558684 | 790..879 | 100 | -> | Minus |
3R | 11558757..11559541 | 4..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:35 Download gff for
BS08147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7384317..7384406 | 790..879 | 100 | -> | Minus |
arm_3R | 7384479..7385263 | 4..789 | 99 | | Minus |
BS08147.5prime Sequence
966 bp (827 high quality bases) assembled on 2006-01-06
> BS08147.5prime
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGGAGAACACTGATGGGATATGCCTTAATCTGCTGGT
GGCTTTCCGACCCGCACTGGAGGGAATCTCGCTGATCGGCAAGTGCATTT
GGCAGGAACTGGGGTG
BS08147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-PA | 1023 | CG10898-RA | 1..947 | 17..963 | 4635 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1969 | CG10898-RA | 599..1545 | 17..963 | 4675 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11558756..11559453 | 266..963 | 3430 | 99.4 | Plus |
3R | 32079331 | 3R | 11558435..11558685 | 17..267 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:00:55 has no hits.
BS08147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:35:02 Download gff for
BS08147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 1..949 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:32:30 Download gff for
BS08147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-PA | 1..949 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:52:41 Download gff for
BS08147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 642..1594 | 9..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:41 Download gff for
BS08147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 595..1547 | 9..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:41 Download gff for
BS08147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11558431..11558684 | 9..266 | 98 | -> | Plus |
3R | 11558757..11559455 | 267..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:52:41 Download gff for
BS08147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7384153..7384406 | 9..266 | 98 | -> | Plus |
arm_3R | 7384479..7385177 | 267..966 | 99 | | Plus |
BS08147.complete Sequence
1055 bp (1055 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ636112
> BS08147.complete
GAAGTTATCAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTT
TGGACTCAAAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCT
CTTAAGGAACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATC
CGCATCCGATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGG
CCTGTGTGTTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCC
AAACAGAGCTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAG
GGGCGAATCCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTG
GTCTAAATGCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGC
TCTTGGTTCCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAA
AACTCCTGCGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTA
ATCCCAAGGAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAG
ATTGGAAGGGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACC
CTGGCATGGGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATC
TGCGGGTTCTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATC
CTGGTCAGTGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCC
GAATCGCAGCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTG
GTGCGGAGCTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCAC
TCAGCTTCGGAGCAGGAGAACACTGATGGAATATGCCTTAATCTGCTGGT
GGCTTTCCGACCGCCACTGGAGGAAATCTCGCTGATCGGCAAGTGCATTT
GGCAGGAACTGGGTGCGCCACTTGACGAGATGCTGGGACGTATCGTCAGC
AGCAAGAACGCATCCATTCCGCTGAATGTGGTGCGCTAAAAGCTTTCTAG
ACCAT
BS08147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1023 | CG10898-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-RA | 1969 | CG10898-RA | 599..1623 | 17..1041 | 5125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11558756..11559531 | 266..1041 | 3880 | 100 | Plus |
3R | 32079331 | 3R | 11558435..11558685 | 17..267 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:58:23 has no hits.
BS08147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:00 Download gff for
BS08147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:17 Download gff for
BS08147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 642..1680 | 9..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:28 Download gff for
BS08147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 646..1666 | 17..1037 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:00 Download gff for
BS08147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 642..1680 | 9..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:22 Download gff for
BS08147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10898-RA | 599..1619 | 17..1037 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:22 Download gff for
BS08147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11558435..11558684 | 17..266 | 100 | -> | Plus |
3R | 11558757..11559527 | 267..1037 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:28 Download gff for
BS08147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7384157..7384406 | 17..266 | 100 | -> | Plus |
arm_3R | 7384479..7385249 | 267..1037 | 100 | | Plus |
BS08147.pep Sequence
Translation from 16 to 1038
> BS08147.pep
MASIVEKVRRILDSKDLGDITTELCDFSLKEQNATAEAQGVQPSSASDFV
PILGQTVTYIVACVLINEHDELLMIEEAKQSCAGKWYLPAGRMERGESIT
EAAAREVFEETGLNAELTTLLAVEAAGGSWFRFVLTGRITGGRLKTPADA
DAESIQARWVRNPKEVPLRANDILSIIEIGRAYHQGQKIAISPSPWHGTI
LPTRFAHKRNYLRVLAVARKRAHNSLNILVSEKNAHHFPTVELHPNRSLH
STLRKFMIEIFGAELPQHRPHGLLSVEHSASEQENTDGICLNLLVAFRPP
LEEISLIGKCIWQELGAPLDEMLGRIVSSKNASIPLNVVR*
BS08147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10898-PA | 340 | CG10898-PA | 1..340 | 1..340 | 1743 | 100 | Plus |